Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002487

Physical Location & Seq

Genomic Coordinates Forward (+)

2966576 .. 2970357

Gene Structure 3782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022534

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTCTTTGCTCGGTCAGCTCCGAGCTGAGTGTGCCATTCTTGAAAGAGTGGTCTACAAGAACAAGAATCAGCATAGACGTTCCTCTTATTGCCAGTACCTAATGAAGATGGTTGAACCAATGTTGAAGGCTGCTATTCAGATATCTACATTGCTGGCTCGATCTTTTTTCATGGGATTCTCTTTGACTATCTTAACTTTGCTTGCACGACTTCGAGTTTTGGTTCAACAGATTCTGCTTGATGTTGTTTCAGTATTCAACATGGTTTCTTCTCTCTCTCAAAAGAAGCAATCAGTTAAAATAAATCAAGAAGGAGTTGAGGTCTTCAGGGAGTTTTACCCTGCACAAGAGGATTTTATCACTCTAGAGTGCGTGTGGAAATCTGATAAATTTGACTTGCTTGAGAGGACACATAAGTGCCAGATCGCAAGTCCTGGTGTGGATCTTTCTTTACGGACATTATCTGTGTTTTATCGAAGTATTGAGTCTTCCCTTGGAGATGGCGAAATCATGTCTGAGAGGCCAGATGAAATCCATACTGTTGAGCTTGATCAAGTTCAGGTCATGGAGAACAACATTGATCTATTATCTGGTCCATCCGATGGTGATGATGTAAAGCTGGTTGAACCTTGTGGGGAGGGTTCAAACATGGAAGACACTCCTAGCAAAGAGGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4477

Protein Analysis

227

Amino Acids

25.55

Weight (kDa)

5.02

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50910 AT1G50910
fragaria_vesca	FvH4_3g22120 FvH4_3g22120
malus_domestica	MD03G1208200.v1.1 MD11G1222400.v1.1
prunus_persica	Prupe.4G208500_v2.0.a1
pyrus_communis	pycom11g19620
rosa_chinensis	RchiOBHm_Chr1g0330851 RchiOBHm_Chr5g0037971
rosa_laevigata	RLG00000022534 RLG00000029769 RLG00000029772 RLG00000029783 RLG00000033828
rosa_multiflora	Rmu_sc0002621.1_g000008 Rmu_sc0002621.1_g000015 Rmu_sc0002670.1_g000013 Rmu_sc0002899.1_g000005 Rmu_sc0010964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319700
rosa_rugosa	Rorug01G0090700 Rorug05G0169800
rosa_samantha	Rh1AG112300 Rh1BG086400 Rh1BG114800 Rh1CG107700 Rh1CG109400 Rh1DG117800 Rh3BG367100 Rh3BG367300 Rh5AG258000 Rh5BG261000 Rh5CG293300 Rh5DG270200 Rh6BG121000 Rh6BG268100 Rh6CG119300
rosa_wichuraiana	Rw1G009090 Rw5G023910 Rw5G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccI	GTMKAC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	1 cut(s)	310
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	7 cut(s)	44, 116, 127, 227, 259, 626, 645
AjnI	CCWGG	1 cut(s)	433
AleI	CACNNNNGTG	1 cut(s)	415
AluBI	AGCT	4 cut(s)	19, 26, 547, 619
AluI	AGCT	4 cut(s)	19, 26, 547, 619
AlwI	GGATC	1 cut(s)	450
AlwNI	CAGNNNCTG	1 cut(s)	235
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	593
BarI	GAAGNNNNNNTAC	2 cut(s)	472, 504
BbsI	GAAGAC	3 cut(s)	316, 480, 660
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	4 cut(s)	103, 494, 596, 604
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	1 cut(s)	550
BfaI	CTAG	2 cut(s)	365, 663
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	593
BmrFI	CCNGG	1 cut(s)	435
BpiI	GAAGAC	3 cut(s)	316, 480, 660
BpuEI	CTTGAG	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	493
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	1 cut(s)	596
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	1 cut(s)	149
BseMII	CTCAG	2 cut(s)	18, 507
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	523
BslI	CCNNNNNNNGG	1 cut(s)	602
BsnI	GGCC	1 cut(s)	523
Bsp143I	GATC	5 cut(s)	161, 423, 442, 550, 580
BspANI	GGCC	1 cut(s)	523
BspCNI	CTCAG	2 cut(s)	19, 508
BspPI	GGATC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	5 cut(s)	161, 423, 442, 550, 580
BssT1I	CCWWGG	1 cut(s)	493
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	541
BstC8I	GCNNGC	2 cut(s)	156, 204
BstDEI	CTNAG	2 cut(s)	27, 516
BstF5I	GGATG	1 cut(s)	596
BstKTI	GATC	5 cut(s)	164, 426, 445, 553, 583
BstMBI	GATC	5 cut(s)	161, 423, 442, 550, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 32
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	3 cut(s)	316, 480, 660
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	596
Cac8I	GCNNGC	2 cut(s)	156, 204
CaiI	CAGNNNCTG	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	593
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	5 cut(s)	172, 262, 511, 565, 649
CviJI	RGCY	8 cut(s)	19, 26, 131, 158, 523, 547, 619, 674
CviKI_1	RGCY	8 cut(s)	19, 26, 131, 158, 523, 547, 619, 674
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	27, 516
DpnI	GATC	5 cut(s)	163, 425, 444, 552, 582
DpnII	GATC	5 cut(s)	161, 423, 442, 550, 580
Eco130I	CCWWGG	1 cut(s)	493
Eco32I	GATATC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	433
EcoRV	GATATC	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	5 cut(s)	175, 265, 514, 568, 652
FaiI	YATR	8 cut(s)	75, 173, 263, 414, 512, 537, 566, 650
FatI	CATG	5 cut(s)	171, 261, 510, 564, 648
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	583
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	2 cut(s)	365, 663
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	523
Hin1II	CATG	5 cut(s)	175, 265, 514, 568, 652
HinfI	GANTC	4 cut(s)	67, 177, 232, 485
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	5 cut(s)	23, 141, 385, 517, 601
Hpy188III	TCNNGA	3 cut(s)	41, 308, 365
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	121, 305
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	206, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 32
HpyF3I	CTNAG	2 cut(s)	27, 516
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	5 cut(s)	175, 265, 514, 568, 652
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	5 cut(s)	161, 423, 442, 550, 580
LmnI	GCTCC	1 cut(s)	24
Lsp1109I	GCAGC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	365, 663
MaeII	ACGT	1 cut(s)	79
MalI	GATC	5 cut(s)	163, 425, 444, 552, 582
MboI	GATC	5 cut(s)	161, 423, 442, 550, 580
MboII	GAAGA	5 cut(s)	118, 261, 316, 480, 665
MflI	RGATCY	1 cut(s)	442
MluCI	AATT	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	7 cut(s)	94, 313, 343, 399, 513, 631, 664
MseI	TTAA	2 cut(s)	194, 297
MslI	CAYNNNNRTG	1 cut(s)	415
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	16, 32
NdeII	GATC	5 cut(s)	161, 423, 442, 550, 580
NlaIII	CATG	5 cut(s)	175, 265, 514, 568, 652
OliI	CACNNNNGTG	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	67, 177, 232
PflMI	CCANNNNNTGG	1 cut(s)	602
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspPI	GGNCC	1 cut(s)	593
PstNI	CAGNNNCTG	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	442
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	194, 297
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	5 cut(s)	161, 423, 442, 550, 580
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	9 cut(s)	21, 28, 82, 102, 324, 549, 564, 621, 631
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	1 cut(s)	389
SspMI	CTAG	2 cut(s)	365, 663
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	3 cut(s)	160, 214, 475
TasI	AATT	1 cut(s)	389
TfiI	GAWTC	3 cut(s)	67, 177, 232
Tru1I	TTAA	2 cut(s)	194, 297
Tru9I	TTAA	2 cut(s)	194, 297
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	119, 160, 543
TspGWI	ACGGA	1 cut(s)	469
Van91I	CCANNNNNTGG	1 cut(s)	602
VpaK11BI	GGWCC	1 cut(s)	593
XapI	RAATTY	1 cut(s)	389
XbaI	TCTAGA	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	2 cut(s)	365, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.