Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010964.1

Orthogroup ID

OG0002487

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 3925

Gene Structure 3924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010964.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atggattccgaagcagaggctcttgaggagaagttgatgtctttgctcggtcagctccgagctgagtgtgccattcttgaaagagtggtctacaagaacaagaatcagcatagacgttcctcttacttccagtacctaatgaaggtaaggagggatttgaggcttttacaatcaactaagttggaggagattttgggctgctgtttccaaactatcactggaaagagacccaagcaaaagatgcatctattagaaagtttgaagagaagaaaatgtggaagtggaaaatataatttcatggaacgacttctgggagctgcacgtcttctatcgcagatggttgaaccaatgttgaaggctgctattcagatatctacattgctggctcgatcttttttcatgggattctctttgactatcttagctttgcttgcacgacttcgagttttggttcaacagattctgcttgatgttgtttcagtattcaacatggtttcttctctttcccaaaagaagcaatcagttaaaataaatcaagaaggagttgaggtcttcagggagttttaccctacacaagaggattttatcactctcgagtgcgtgtggaaatctgataaatttgacttgcttgagaggacacataagagccagattgcaagtcctggtgtggatatttctgtagggacatcatctgtgctttatcgaagtattgagtcttcccttggagatgacgaaatgtctgagaggccagatgaaaaccatactgttgagctcgatcaagttcaggtcatggagaacaacattaatctattgtctggtccatccgatggtgatgatgtaaagctggttgaaccttgtggggagggttcaaacatggaagacactcctagcaaagagctttcccaagaaggttgcttgccacaagtctcttcaggttcagaggcatcaaaactgaagtctggaccagttaaagtggcattcgtacaaattaaaaaacccataacatcatccgcaaatgcatctggactccattctagagaaactgacatcattaaccatgataaggaagatccattgttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4477

Protein Analysis

360

Amino Acids

40.46

Weight (kDa)

6.16

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50910 AT1G50910
fragaria_vesca	FvH4_3g22120 FvH4_3g22120
malus_domestica	MD03G1208200.v1.1 MD11G1222400.v1.1
prunus_persica	Prupe.4G208500_v2.0.a1
pyrus_communis	pycom11g19620
rosa_chinensis	RchiOBHm_Chr1g0330851 RchiOBHm_Chr5g0037971
rosa_laevigata	RLG00000022534 RLG00000029769 RLG00000029772 RLG00000029783 RLG00000033828
rosa_multiflora	Rmu_sc0002621.1_g000008 Rmu_sc0002621.1_g000015 Rmu_sc0002670.1_g000013 Rmu_sc0002899.1_g000005 Rmu_sc0010964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319700
rosa_rugosa	Rorug01G0090700 Rorug05G0169800
rosa_samantha	Rh1AG112300 Rh1BG086400 Rh1BG114800 Rh1CG107700 Rh1CG109400 Rh1DG117800 Rh3BG367100 Rh3BG367300 Rh5AG258000 Rh5BG261000 Rh5CG293300 Rh5DG270200 Rh6BG121000 Rh6BG268100 Rh6CG119300
rosa_wichuraiana	Rw1G009090 Rw5G023910 Rw5G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	827
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	1011
AclWI	GGATC	1 cut(s)	1064
AcsI	RAATTY	1 cut(s)	617
AcuI	CTGAAG	3 cut(s)	538, 915, 974
AfaI	GTAC	2 cut(s)	134, 984
AfiI	CCNNNNNNNGG	3 cut(s)	142, 827, 1063
AgsI	TTSAA	8 cut(s)	80, 262, 344, 355, 455, 487, 851, 870
AhdI	GACNNNNNGTC	1 cut(s)	736
AjiI	CACGTC	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	7 cut(s)	55, 62, 317, 425, 772, 844, 898
AluI	AGCT	7 cut(s)	55, 62, 317, 425, 772, 844, 898
Alw21I	GWGCWC	1 cut(s)	774
Alw26I	GTCTC	2 cut(s)	220, 931
AlwI	GGATC	1 cut(s)	1064
AlwNI	CAGNNNCTG	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	593
AoxI	GGCC	1 cut(s)	746
ApeKI	GCWGC	3 cut(s)	198, 317, 359
ApoI	RAATTY	1 cut(s)	617
ArsI	GACNNNNNNTTYG	2 cut(s)	941, 973
AseI	ATTAAT	1 cut(s)	804
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	818, 962
AsuHPI	GGTGA	1 cut(s)	842
AvaI	CYCGRG	1 cut(s)	593
AvaII	GGWCC	2 cut(s)	818, 962
BanII	GRGCYC	1 cut(s)	774
BarI	GAAGNNNNNNTAC	2 cut(s)	700, 732
BbsI	GAAGAC	4 cut(s)	317, 544, 708, 885
Bbv12I	GWGCWC	1 cut(s)	774
BbvI	GCAGC	3 cut(s)	185, 304, 346
BccI	CCATC	3 cut(s)	331, 821, 829
BciT130I	CCWGG	1 cut(s)	663
BcoDI	GTCTC	2 cut(s)	220, 931
BfaI	CTAG	2 cut(s)	888, 1035
BfmI	CTRYAG	1 cut(s)	678
BisI	GCNGC	3 cut(s)	199, 318, 360
BlsI	GCNGC	3 cut(s)	200, 319, 361
Bme1390I	CCNGG	1 cut(s)	663
Bme18I	GGWCC	2 cut(s)	818, 962
BmeRI	GACNNNNNGTC	1 cut(s)	736
BmeT110I	CYCGRG	1 cut(s)	593
BmgBI	CACGTC	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	818, 962
BmrFI	CCNGG	1 cut(s)	663
BmsI	GCATC	4 cut(s)	231, 253, 953, 1028
BpiI	GAAGAC	4 cut(s)	317, 544, 708, 885
BpuEI	CTTGAG	2 cut(s)	44, 650
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	721
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 827, 1063
Bse1I	ACTGG	3 cut(s)	130, 223, 965
Bse3DI	GCAATG	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	1 cut(s)	721
BseGI	GGATG	2 cut(s)	821, 1007
BseLI	CCNNNNNNNGG	3 cut(s)	142, 827, 1063
BseMI	GCAATG	1 cut(s)	377
BseMII	CTCAG	2 cut(s)	54, 732
BseNI	ACTGG	3 cut(s)	130, 223, 965
BseRI	GAGGAG	2 cut(s)	41, 200
BseXI	GCAGC	3 cut(s)	185, 304, 346
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	774
BsiHKCI	CYCGRG	1 cut(s)	593
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	3 cut(s)	142, 827, 1063
BsmAI	GTCTC	2 cut(s)	220, 931
BsmFI	GGGAC	1 cut(s)	697
BsmI	GAATGC	1 cut(s)	977
BsnI	GGCC	1 cut(s)	748
Bso31I	GGTCTC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	593
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp143I	GATC	3 cut(s)	389, 775, 1069
BspACI	CCGC	1 cut(s)	1011
BspANI	GGCC	1 cut(s)	748
BspCNI	CTCAG	2 cut(s)	55, 733
BspPI	GGATC	1 cut(s)	1064
BspTNI	GGTCTC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	377
BsrI	ACTGG	3 cut(s)	130, 223, 965
BssECI	CCNNGG	1 cut(s)	721
BssMI	GATC	3 cut(s)	389, 775, 1069
BssT1I	CCWWGG	1 cut(s)	721
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	1 cut(s)	766
Bst6I	CTCTTC	2 cut(s)	257, 934
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstC8I	GCNNGC	3 cut(s)	384, 432, 917
BstDEI	CTNAG	4 cut(s)	63, 177, 421, 741
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	821, 1007
BstKTI	GATC	3 cut(s)	392, 778, 1072
BstMAI	GTCTC	2 cut(s)	220, 931
BstMBI	GATC	3 cut(s)	389, 775, 1069
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 68, 241, 431
BstNI	CCWGG	1 cut(s)	663
BstSCI	CCNGG	1 cut(s)	661
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	3 cut(s)	185, 304, 346
BstV2I	GAAGAC	4 cut(s)	317, 544, 708, 885
BstX2I	RGATCY	1 cut(s)	1069
BstYI	RGATCY	1 cut(s)	1069
BsuRI	GGCC	1 cut(s)	748
BtrI	CACGTC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	821, 1007
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	3 cut(s)	384, 432, 917
CaiI	CAGNNNCTG	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	818, 962
Csp6I	GTAC	2 cut(s)	133, 983
CviAII	CATG	6 cut(s)	298, 400, 490, 790, 874, 1058
CviQI	GTAC	2 cut(s)	133, 983
DdeI	CTNAG	4 cut(s)	63, 177, 421, 741
DpnI	GATC	3 cut(s)	391, 777, 1071
DpnII	GATC	3 cut(s)	389, 775, 1069
DriI	GACNNNNNGTC	1 cut(s)	736
Eam1104I	CTCTTC	2 cut(s)	257, 934
Eam1105I	GACNNNNNGTC	1 cut(s)	736
EarI	CTCTTC	2 cut(s)	257, 934
Ecl136II	GAGCTC	1 cut(s)	772
Eco130I	CCWWGG	1 cut(s)	721
Eco24I	GRGCYC	1 cut(s)	774
Eco31I	GGTCTC	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	372
Eco47I	GGWCC	2 cut(s)	818, 962
Eco53kI	GAGCTC	1 cut(s)	772
Eco57I	CTGAAG	3 cut(s)	538, 915, 974
Eco88I	CYCGRG	1 cut(s)	593
EcoICRI	GAGCTC	1 cut(s)	772
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	661
EcoRV	GATATC	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	721
EcoT22I	ATGCAT	2 cut(s)	246, 1021
EcoT38I	GRGCYC	1 cut(s)	774
ErhI	CCWWGG	1 cut(s)	721
FaeI	CATG	6 cut(s)	301, 403, 493, 793, 877, 1061
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	6 cut(s)	297, 399, 489, 789, 873, 1057
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	199, 318, 360
FokI	GGATG	2 cut(s)	808, 994
FriOI	GRGCYC	1 cut(s)	774
Fsp4HI	GCNGC	3 cut(s)	199, 318, 360
FspBI	CTAG	2 cut(s)	888, 1035
GluI	GCNGC	3 cut(s)	199, 318, 360
HaeIII	GGCC	1 cut(s)	748
Hin1II	CATG	6 cut(s)	301, 403, 493, 793, 877, 1061
HinfI	GANTC	6 cut(s)	5, 103, 405, 460, 713, 1026
HphI	GGTGA	1 cut(s)	842
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	7 cut(s)	10, 59, 369, 613, 742, 826, 940
Hpy188III	TCNNGA	7 cut(s)	23, 77, 536, 593, 960, 1023, 1035
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	4 cut(s)	136, 349, 533, 902
HpyCH4III	ACNGT	1 cut(s)	766
HpyCH4IV	ACGT	2 cut(s)	115, 322
HpyCH4V	TGCA	5 cut(s)	244, 320, 434, 656, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 68, 241, 431
HpyF3I	CTNAG	4 cut(s)	63, 177, 421, 741
HpySE526I	ACGT	2 cut(s)	115, 322
Hsp92II	CATG	6 cut(s)	301, 403, 493, 793, 877, 1061
Kzo9I	GATC	3 cut(s)	389, 775, 1069
LmnI	GCTCC	2 cut(s)	60, 314
Lsp1109I	GCAGC	3 cut(s)	185, 304, 346
LweI	GCATC	4 cut(s)	231, 253, 953, 1028
MaeI	CTAG	2 cut(s)	888, 1035
MaeII	ACGT	2 cut(s)	115, 322
MalI	GATC	3 cut(s)	391, 777, 1071
MboI	GATC	3 cut(s)	389, 775, 1069
MboII	GAAGA	9 cut(s)	274, 279, 317, 489, 544, 708, 890, 921, 1079
MflI	RGATCY	1 cut(s)	1069
MhlI	GDGCHC	1 cut(s)	774
MluCI	AATT	3 cut(s)	292, 617, 987
MlyI	GAGTC	2 cut(s)	722, 1020
MmeI	TCCRAC	1 cut(s)	162
Mph1103I	ATGCAT	2 cut(s)	246, 1021
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	5 cut(s)	525, 804, 969, 990, 1053
MspR9I	CCNGG	1 cut(s)	663
Mva1269I	GAATGC	1 cut(s)	977
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	4 cut(s)	52, 68, 241, 431
NdeII	GATC	3 cut(s)	389, 775, 1069
NlaIII	CATG	6 cut(s)	301, 403, 493, 793, 877, 1061
NsiI	ATGCAT	2 cut(s)	246, 1021
PaeR7I	CTCGAG	1 cut(s)	593
PctI	GAATGC	1 cut(s)	977
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	4 cut(s)	5, 103, 405, 460
PflMI	CCANNNNNTGG	1 cut(s)	827
PkrI	GCNGC	3 cut(s)	200, 319, 361
PleI	GAGTC	2 cut(s)	721, 1020
PpsI	GAGTC	2 cut(s)	721, 1020
PshBI	ATTAAT	1 cut(s)	804
Psp124BI	GAGCTC	1 cut(s)	774
Psp6I	CCWGG	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	661
PspPI	GGNCC	2 cut(s)	818, 962
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	1069
RsaI	GTAC	2 cut(s)	134, 984
RsaNI	GTAC	2 cut(s)	133, 983
SacI	GAGCTC	1 cut(s)	774
SaqAI	TTAA	5 cut(s)	525, 804, 969, 990, 1053
SatI	GCNGC	3 cut(s)	199, 318, 360
Sau3AI	GATC	3 cut(s)	389, 775, 1069
Sau96I	GGNCC	2 cut(s)	818, 962
SchI	GAGTC	2 cut(s)	722, 1020
ScrFI	CCNGG	1 cut(s)	663
SduI	GDGCHC	1 cut(s)	774
SfaNI	GCATC	4 cut(s)	231, 253, 953, 1028
SfcI	CTRYAG	1 cut(s)	678
Sfr274I	CTCGAG	1 cut(s)	593
SinI	GGWCC	2 cut(s)	818, 962
SlaI	CTCGAG	1 cut(s)	593
SmlI	CTYRAG	3 cut(s)	23, 593, 629
SmoI	CTYRAG	3 cut(s)	23, 593, 629
Sse9I	AATT	3 cut(s)	292, 617, 987
SsiI	CCGC	1 cut(s)	1011
SspMI	CTAG	2 cut(s)	888, 1035
SstI	GAGCTC	1 cut(s)	774
StyD4I	CCNGG	1 cut(s)	661
StyI	CCWWGG	1 cut(s)	721
TaaI	ACNGT	1 cut(s)	766
TaiI	ACGT	2 cut(s)	118, 325
TaqI	TCGA	5 cut(s)	388, 442, 594, 703, 774
TaqII	GACCGA	1 cut(s)	38
TasI	AATT	3 cut(s)	292, 617, 987
TfiI	GAWTC	4 cut(s)	5, 103, 405, 460
Tru1I	TTAA	5 cut(s)	525, 804, 969, 990, 1053
Tru9I	TTAA	5 cut(s)	525, 804, 969, 990, 1053
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	3 cut(s)	198, 317, 359
TspDTI	ATGAA	4 cut(s)	155, 286, 388, 768
TspRI	CASTG	1 cut(s)	223
Van91I	CCANNNNNTGG	1 cut(s)	827
VpaK11BI	GGWCC	2 cut(s)	818, 962
VspI	ATTAAT	1 cut(s)	804
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	617
XbaI	TCTAGA	1 cut(s)	1034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	593
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	2 cut(s)	888, 1035
Zsp2I	ATGCAT	2 cut(s)	246, 1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.