AT5G55090
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012851
Physical Location & Seq
Reverse (-)
22356852 .. 22358413
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55090.1

Sequence Viewer

Length: 1347 bp
ATGGAGGAACAAAACTGGATAAGAGGACCAATCATAGGTCGAGGCTCAACAGCTACTGTCTCACTTGGAATCACAAATTCCGGTGACTTCTTCGCCGTCAAATCCGCCGAGTTTTCTTCATCGGCGTTTTTGCAGAGAGAACAATCGATTTTGTCGAAGTTGAGCTCTCCTTACATAGTCAAGTACATTGGTTCTAATGTAACGAAGGAGAACGACAAGTTGATGTATAATCTCTTAATGGAGTATGTTTCCGGTGGGAGTCTTCACGATTTGATCAAGAATTCCGGCGGGAAGTTACCGGAGCCGTTGATTAGATCCTACACACGTCAGATATTGAAAGGTTTGATGTATCTTCATGATCAAGGAATCGTTCATTGCGATGTGAAGAGCCAGAATGTGATGATCGGAGGAGAGATTGCGAAGATCGTCGATTTGGGTTGTGCTAAAACGGTGGAAGAGAATGAGAACTTGGAATTTTCCGGTACACCGGCGTTTATGTCACCGGAGGTAGCACGTGGTGAAGAACAGAGTTTTCCAGCTGATGTTTGGGCTTTGGGGTGTACGGTGATAGAGATGGCTACAGGGTCAAGTCCTTGGCCGGAGCTAAACGACGTCGTTGCTGCTATTTATAAGATTGGTTTCACCGGCGAGTCGCCGGTGATTCCGGTTTGGTTATCGGAGAAAGGTCAAGACTTTTTGAGGAAGTGTTTGAGAAAAGATCCGAAACAGAGATGGACTGTTGAAGAATTGCTTCAACATCCGTTTCTCGACGAAGAAGACAACGACAGTGACCAAACTGGTAACTGTCTGAATTCTTCATCTCCTAGTACTGTGTTGGATCAACGGTTTTGGGATTTATGTGAAACTTCGAGAAGTAGATTCATTAAAGAGGATCACGAAGACCCATTTGCAAATTCTACAAATTTCTTATGGGATGACGATTCTTTACCGGGTGATCGGATCAAGAAACTCGCCGGAGACGAGAGTTCCGGTGAACCAGACTGGGAAACGAACGGTTGGATTGAAGTAAGGGGAGAGATAGAGAAACGTAACGAGGAAGAAGATGAGAATTGCGTTGAAGCAACGTCATTGGAGGAGGACGAAGAAGAAGTGGGAGGATTTGAGAATTGGATCTGGGATCAACAAGACAGCTTGTTCTTGGAATATTCCCCTGAGGACAACATTTATTATTTTTACTCTTATTATAACATCTTTGATGAAGATATAATTCTATATTATGATCATCTTGAAGATTGTTTTGTACTAAAATTTGATGATAATAATAAGAAGATTTTTTTCTTTAGCCACATTACAAATTCTTGTTTTGAGATTACTAATTACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010119 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030587 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032502 GO:0032870 GO:0033554 GO:0033674 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048584 GO:0048831 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0090702 GO:0097305 GO:0097306 GO:0099120 GO:0099568 GO:0140096 GO:1900055 GO:1900057 GO:1901419 GO:1901421 GO:1901564 GO:1901700 GO:1901701 GO:1902456 GO:1902457 GO:1902531 GO:1902533 GO:1905623 GO:1905957 GO:1905959 GO:2000024 GO:2000026 GO:2000038
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
Pkinase

Protein Analysis

448

Amino Acids

51.13

Weight (kDa)

4.36

Isoelectric Point (pI)

58.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 10 - 256 1.4e-58 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 12 - 252 4.4e-33 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012851)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26890 AT5G55090 AT5G55090
fragaria_vesca FvH4_3g01720
malus_domestica MD05G1349600.v1.1 MD10G1324300.v1.1
prunus_persica Prupe.4G017800_v2.0.a1 Prupe.5G022300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0002581
rosa_laevigata RLG00000031041
rosa_multiflora Rmu_co8355711.1_g000001 Rmu_sc0009084.1_g000001
rosa_rugosa Rorug04G0397000
rosa_samantha Rh5AG020500 Rh5BG023200 Rh5CG022500 Rh5DG021600
rosa_wichuraiana Rw5G001890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 630, 1206
AatII GACGTC 1 cut(s) 615
AciI CCGC 2 cut(s) 105, 288
AclWI GGATC 7 cut(s) 309, 713, 846, 900, 968, 1139, 1146
AcoI YGGCCR 1 cut(s) 596
AcsI RAATTY 8 cut(s) 76, 280, 473, 811, 913, 922, 1268, 1315
AcvI CACGTG 1 cut(s) 515
AcyI GRCGYC 1 cut(s) 612
AdeI CACNNNGTG 1 cut(s) 518
AfaI GTAC 5 cut(s) 185, 484, 562, 829, 1263
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 323
AgsI TTSAA 6 cut(s) 337, 743, 755, 1025, 1079, 1250
AjiI CACGTC 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AluBI AGCT 5 cut(s) 53, 165, 539, 604, 1152
AluI AGCT 5 cut(s) 53, 165, 539, 604, 1152
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 2 cut(s) 64, 972
AlwI GGATC 7 cut(s) 309, 713, 846, 900, 968, 1139, 1146
AlwNI CAGNNNCTG 1 cut(s) 56
AoxI GGCC 1 cut(s) 596
ApeKI GCWGC 1 cut(s) 620
ApoI RAATTY 8 cut(s) 76, 280, 473, 811, 913, 922, 1268, 1315
Asp700I GAANNNNTTC 1 cut(s) 750
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 1 cut(s) 951
AsuHPI GGTGA 8 cut(s) 95, 492, 530, 577, 634, 670, 965, 1004
AvaII GGWCC 1 cut(s) 26
AxyI CCTNAGG 1 cut(s) 1173
BanII GRGCYC 1 cut(s) 167
BbrPI CACGTG 1 cut(s) 515
BbsI GAAGAC 3 cut(s) 254, 783, 906
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 607
BccI CCATC 2 cut(s) 568, 726
BceAI ACGGC 2 cut(s) 80, 289
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BclI TGATCA 3 cut(s) 273, 358, 1240
BcnI CCSGG 1 cut(s) 951
BcoDI GTCTC 2 cut(s) 64, 972
BfaI CTAG 1 cut(s) 825
BfmI CTRYAG 1 cut(s) 579
BisI GCNGC 1 cut(s) 621
BlsI GCNGC 1 cut(s) 622
BmcAI AGTACT 1 cut(s) 829
Bme1390I CCNGG 1 cut(s) 951
Bme18I GGWCC 1 cut(s) 26
BmgBI CACGTC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 951
BmrI ACTGGG 1 cut(s) 1012
BmuI ACTGGG 1 cut(s) 1012
BpiI GAAGAC 3 cut(s) 254, 783, 906
BpuMI CCSGG 1 cut(s) 951
Bsa29I ATCGAT 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 515
BsaHI GRCGYC 1 cut(s) 612
BsaJI CCNNGG 1 cut(s) 593
BsaWI WCCGGW 7 cut(s) 80, 251, 298, 479, 502, 664, 989
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 3 cut(s) 487, 644, 655
Bse1I ACTGG 3 cut(s) 20, 802, 1007
Bse21I CCTNAGG 1 cut(s) 1173
Bse3DI GCAATG 1 cut(s) 373
BseCI ATCGAT 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 593
BseGI GGATG 2 cut(s) 757, 940
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 1164
BseNI ACTGG 3 cut(s) 20, 802, 1007
BseRI GAGGAG 2 cut(s) 423, 1109
BseXI GCAGC 1 cut(s) 607
BshFI GGCC 1 cut(s) 598
BshVI ATCGAT 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 2 cut(s) 64, 972
BsmBI CGTCTC 1 cut(s) 972
BsnI GGCC 1 cut(s) 598
Bsp1286I GDGCHC 1 cut(s) 167
BspACI CCGC 2 cut(s) 105, 288
BspANI GGCC 1 cut(s) 598
BspCNI CTCAG 1 cut(s) 1165
BspDI ATCGAT 1 cut(s) 146
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 303
BspPI GGATC 7 cut(s) 309, 713, 846, 900, 968, 1139, 1146
BspQI GCTCTTC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 373
BsrFI RCCGGY 3 cut(s) 487, 644, 655
BsrI ACTGG 3 cut(s) 20, 802, 1007
BssAI RCCGGY 3 cut(s) 487, 644, 655
BssECI CCNNGG 1 cut(s) 593
BssNI GRCGYC 1 cut(s) 612
BssT1I CCWWGG 1 cut(s) 593
Bst4CI ACNGT 9 cut(s) 58, 451, 565, 739, 788, 806, 832, 846, 1016
Bst6I CTCTTC 2 cut(s) 380, 450
BstACI GRCGYC 1 cut(s) 612
BstBAI YACGTR 1 cut(s) 515
BstDEI CTNAG 1 cut(s) 1173
BstF5I GGATG 2 cut(s) 757, 940
BstMAI GTCTC 2 cut(s) 64, 972
BstSCI CCNGG 1 cut(s) 949
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 1 cut(s) 607
BstV2I GAAGAC 3 cut(s) 254, 783, 906
BstX2I RGATCY 3 cut(s) 314, 718, 1131
BstYI RGATCY 3 cut(s) 314, 718, 1131
Bsu15I ATCGAT 1 cut(s) 146
Bsu36I CCTNAGG 1 cut(s) 1173
BsuRI GGCC 1 cut(s) 598
BsuTUI ATCGAT 1 cut(s) 146
BtgZI GCGATG 1 cut(s) 393
BtrI CACGTC 1 cut(s) 326
BtsCI GGATG 2 cut(s) 757, 940
BtsIMutI CAGTG 1 cut(s) 793
CaiI CAGNNNCTG 1 cut(s) 56
CciI TCATGA 1 cut(s) 355
Cfr10I RCCGGY 3 cut(s) 487, 644, 655
Cfr13I GGNCC 1 cut(s) 26
ClaI ATCGAT 1 cut(s) 146
Csp6I GTAC 5 cut(s) 184, 483, 561, 828, 1262
CviAII CATG 1 cut(s) 356
CviQI GTAC 5 cut(s) 184, 483, 561, 828, 1262
DdeI CTNAG 1 cut(s) 1173
DraIII CACNNNGTG 1 cut(s) 518
EaeI YGGCCR 1 cut(s) 596
Eam1104I CTCTTC 2 cut(s) 380, 450
EarI CTCTTC 2 cut(s) 380, 450
EciI GGCGGA 1 cut(s) 94
Ecl136II GAGCTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 593
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 165
Eco72I CACGTG 1 cut(s) 515
Eco81I CCTNAGG 1 cut(s) 1173
EcoICRI GAGCTC 1 cut(s) 165
EcoRI GAATTC 2 cut(s) 280, 811
EcoT14I CCWWGG 1 cut(s) 593
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 593
Esp3I CGTCTC 1 cut(s) 972
FaeI CATG 1 cut(s) 359
FalI AAGNNNNNCTT 2 cut(s) 735, 767
FatI CATG 1 cut(s) 355
FauI CCCGC 1 cut(s) 281
FbaI TGATCA 3 cut(s) 273, 358, 1240
Fnu4HI GCNGC 1 cut(s) 621
FokI GGATG 2 cut(s) 744, 947
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 621
FspBI CTAG 1 cut(s) 825
GluI GCNGC 1 cut(s) 621
HaeIII GGCC 1 cut(s) 598
Hin1I GRCGYC 1 cut(s) 612
Hin1II CATG 1 cut(s) 359
HinfI GANTC 7 cut(s) 69, 259, 366, 650, 661, 879, 941
HphI GGTGA 8 cut(s) 95, 492, 530, 577, 634, 670, 965, 1004
Hpy166II GTNNAC 3 cut(s) 485, 561, 995
Hpy188I TCNGA 6 cut(s) 330, 407, 679, 723, 810, 960
Hpy188III TCNNGA 9 cut(s) 266, 277, 356, 689, 767, 870, 896, 964, 1247
Hpy8I GTNNAC 3 cut(s) 485, 561, 995
Hpy99I CGWCG 4 cut(s) 431, 614, 617, 773
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 9 cut(s) 58, 451, 565, 739, 788, 806, 832, 846, 1016
HpyCH4IV ACGT 5 cut(s) 325, 514, 612, 1048, 1085
HpyCH4V TGCA 2 cut(s) 133, 911
HpyF3I CTNAG 1 cut(s) 1173
HpySE526I ACGT 5 cut(s) 325, 514, 612, 1048, 1085
Hsp92I GRCGYC 1 cut(s) 612
Hsp92II CATG 1 cut(s) 359
Ksp22I TGATCA 3 cut(s) 273, 358, 1240
LguI GCTCTTC 1 cut(s) 380
LmnI GCTCC 2 cut(s) 301, 601
Lsp1109I GCAGC 1 cut(s) 607
MaeI CTAG 1 cut(s) 825
MaeII ACGT 5 cut(s) 325, 514, 612, 1048, 1085
MaeIII GTNAC 7 cut(s) 83, 199, 294, 498, 788, 800, 1049
MfeI CAATTG 1 cut(s) 1342
MflI RGATCY 3 cut(s) 314, 718, 1131
MhlI GDGCHC 1 cut(s) 167
MlyI GAGTC 2 cut(s) 268, 659
MmeI TCCRAC 2 cut(s) 816, 998
MroXI GAANNNNTTC 1 cut(s) 750
MseI TTAA 2 cut(s) 236, 885
MslI CAYNNNNRTG 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 539
MspR9I CCNGG 1 cut(s) 951
MunI CAATTG 1 cut(s) 1342
NciI CCSGG 1 cut(s) 951
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 303
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 3 cut(s) 83, 498, 788
PagI TCATGA 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 380
PcsI WCGNNNNNNNCGW 3 cut(s) 152, 375, 978
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 5 cut(s) 69, 366, 661, 879, 941
PkrI GCNGC 1 cut(s) 622
PleI GAGTC 2 cut(s) 267, 658
PmaCI CACGTG 1 cut(s) 515
PmlI CACGTG 1 cut(s) 515
PpsI GAGTC 2 cut(s) 267, 658
Ppu21I YACGTR 1 cut(s) 515
PsiI TTATAA 2 cut(s) 630, 1206
Psp124BI GAGCTC 1 cut(s) 167
PspCI CACGTG 1 cut(s) 515
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 1 cut(s) 26
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 3 cut(s) 314, 718, 1131
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 5 cut(s) 185, 484, 562, 829, 1263
RsaNI GTAC 5 cut(s) 184, 483, 561, 828, 1262
RseI CAYNNNNRTG 1 cut(s) 378
SacI GAGCTC 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 380
SaqAI TTAA 2 cut(s) 236, 885
SatI GCNGC 1 cut(s) 621
Sau96I GGNCC 1 cut(s) 26
ScaI AGTACT 1 cut(s) 829
SchI GAGTC 2 cut(s) 268, 659
ScrFI CCNGG 1 cut(s) 951
SduI GDGCHC 1 cut(s) 167
SfcI CTRYAG 1 cut(s) 579
SgrAI CRCCGGYG 3 cut(s) 487, 644, 655
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 378
SsiI CCGC 2 cut(s) 105, 288
SspI AATATT 1 cut(s) 1166
SspMI CTAG 1 cut(s) 825
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 949
StyI CCWWGG 1 cut(s) 593
TaaI ACNGT 9 cut(s) 58, 451, 565, 739, 788, 806, 832, 846, 1016
TaiI ACGT 5 cut(s) 328, 517, 615, 1051, 1088
TaqI TCGA 6 cut(s) 40, 146, 155, 429, 768, 869
TatI WGTACW 3 cut(s) 183, 827, 1261
TfiI GAWTC 5 cut(s) 69, 366, 661, 879, 941
Tru1I TTAA 2 cut(s) 236, 885
Tru9I TTAA 2 cut(s) 236, 885
TscAI CASTG 1 cut(s) 793
TseFI GTSAC 3 cut(s) 83, 498, 788
TseI GCWGC 1 cut(s) 620
Tsp45I GTSAC 3 cut(s) 83, 498, 788
TspDTI ATGAA 6 cut(s) 108, 344, 362, 807, 871, 1233
TspGWI ACGGA 1 cut(s) 750
TspRI CASTG 1 cut(s) 793
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 8 cut(s) 76, 280, 473, 811, 913, 922, 1268, 1315
XcmI CCANNNNNNNNNTGG 1 cut(s) 543
XmnI GAANNNNTTC 1 cut(s) 750
XspI CTAG 1 cut(s) 825
ZraI GACGTC 1 cut(s) 613
ZrmI AGTACT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.