Rmu_sc0009084.1_g000001

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009084.1
Physical Location & Seq
Reverse (-)
2439 .. 3707
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009084.1_g000001.1.cds

Sequence Viewer

Length: 1269 bp
atgaactgggccagaggccgtacaatcggcgttggctcctcggccaccgtctctatagccaggtcttgtgattccggggaggtttttgcggtgaaatcagcaagtctctcacattctcactcccttcaggtggagcaagagcttctgtccactttgagctgcgctcaaatagtgtcgtacaagggctggaacatctccaccgaaaacggcggcgttctctacaatctctgcctcgagtacgcaccgggcggcacgctttccgatgaagttcgaaggcaaggtgggtcgttaagcgagtccacgatgagatcctacacgaggcagatactattggggatgcagtacctacatgctaatggaattgtacattgtgacattaagggtcacaatattttggtgacggaagagggcgcgaagttggcggatttgggttgtgctcgacgcgtaaatggtgatcatggctccgctaccattagtggcactcctctttacatggcacccgaggcagcgcgtggagagcaacaagggttcccggccgatgtgtgggccctaggatgtacaattatcgagatggctacggggcaagtcccgtggcctaatgtttcggacccggtatcgggtttgtaccggatcgggttttcgggtgatgtgcccgagattccaaactctttgtcaaagcaaggtagggaatttgtgagcaggtgtctgaagagagacccattggagaggtggtcagctagtgagctgctcaagcattcttttcttctcgaggaagaggaatcctattgttggaatagtcccacaactgtgttggatcatggtttgtgggacttggaggagtttgatgctatggaatgggaacaaagtacctgttcaaattcagctagggaaagaattagaaggttgagtgaaaggaatgccgatacgtcgtcgttagtcggtggaatgctcaattgggcttgtgatggagattgggtgacagtgagaagcaacaaggacgttaatatattgccagaagatgccaatcaagatcatgaagatgaggcaacaaatacaaattctagtgctagtagtaatgggttgggtttgggcacttgtaatggtagttttagttgtagggatatgaagtattggcctttgaaggcctcaaattccaaatgtagcaaaaatgtgttctgtataaaccaaaactttgataatgaggaattttggttttttgtgcatgacatacgtaatgttgtcgatatgtttaaggccctagttaattaa

Protein Analysis

422

Amino Acids

46.52

Weight (kDa)

5.01

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012851)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 690
Acc36I ACCTGC 1 cut(s) 690
AccB1I GGYRCC 1 cut(s) 496
AccII CGCG 3 cut(s) 413, 444, 511
AciI CCGC 5 cut(s) 89, 210, 249, 422, 465
AclWI GGATC 3 cut(s) 303, 638, 822
AcoI YGGCCR 2 cut(s) 42, 534
AcsI RAATTY 5 cut(s) 689, 877, 1057, 1150, 1205
AcuI CTGAAG 2 cut(s) 110, 728
AfaI GTAC 8 cut(s) 22, 179, 239, 344, 366, 559, 626, 868
AfiI CCNNNNNNNGG 6 cut(s) 130, 318, 543, 616, 617, 789
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 2 cut(s) 876, 1141
AjnI CCWGG 1 cut(s) 59
AjuI GAANNNNNNNTTGG 2 cut(s) 937, 969
AleI CACNNNNGTG 1 cut(s) 806
AluBI AGCT 5 cut(s) 142, 159, 737, 745, 884
AluI AGCT 5 cut(s) 142, 159, 737, 745, 884
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 3 cut(s) 55, 110, 708
AlwI GGATC 3 cut(s) 303, 638, 822
Ama87I CYCGRG 4 cut(s) 233, 500, 653, 767
AoxI GGCC 9 cut(s) 9, 16, 42, 534, 546, 593, 1133, 1143, 1254
ApaI GGGCCC 1 cut(s) 550
ApeKI GCWGC 3 cut(s) 159, 506, 745
ApoI RAATTY 5 cut(s) 689, 877, 1057, 1150, 1205
ArsI GACNNNNNNTTYG 2 cut(s) 656, 688
AspA2I CCTAGG 1 cut(s) 550
AspLEI GCGC 3 cut(s) 164, 413, 511
AspS9I GGNCC 5 cut(s) 9, 546, 547, 607, 1255
AsuC2I CCSGG 4 cut(s) 76, 246, 533, 611
AsuHPI GGTGA 5 cut(s) 103, 409, 464, 656, 988
AsuII TTCGAA 1 cut(s) 271
AvaI CYCGRG 4 cut(s) 233, 500, 653, 767
AvaII GGWCC 1 cut(s) 607
AvrII CCTAGG 1 cut(s) 550
BaeGI GKGCMC 3 cut(s) 550, 654, 1094
BanI GGYRCC 1 cut(s) 496
BanII GRGCYC 1 cut(s) 550
BauI CACGAG 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 3 cut(s) 146, 518, 732
BccI CCATC 2 cut(s) 565, 959
BceAI ACGGC 2 cut(s) 3, 223
BciT130I CCWGG 1 cut(s) 61
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 4 cut(s) 76, 246, 533, 611
BcoDI GTCTC 3 cut(s) 55, 110, 708
BfaI CTAG 6 cut(s) 551, 738, 885, 1062, 1068, 1259
BfmI CTRYAG 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 690
BisI GCNGC 5 cut(s) 160, 211, 250, 507, 746
BlnI CCTAGG 1 cut(s) 550
BlsI GCNGC 5 cut(s) 161, 212, 251, 508, 747
Bme1390I CCNGG 5 cut(s) 61, 76, 246, 533, 611
Bme18I GGWCC 1 cut(s) 607
BmeT110I CYCGRG 4 cut(s) 233, 500, 653, 767
BmgT120I GGNCC 5 cut(s) 9, 546, 547, 607, 1255
BmiI GGNNCC 6 cut(s) 37, 463, 498, 530, 548, 609
BmrFI CCNGG 5 cut(s) 61, 76, 246, 533, 611
BmrI ACTGGG 1 cut(s) 16
BmsI GCATC 3 cut(s) 327, 835, 1009
BmuI ACTGGG 1 cut(s) 16
BplI GAGNNNNNCTC 2 cut(s) 148, 180
Bpu14I TTCGAA 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 734
BpuMI CCSGG 4 cut(s) 76, 246, 533, 611
BsaAI YACGTR 1 cut(s) 1232
BsaBI GATNNNNATC 1 cut(s) 1023
BsaI GGTCTC 1 cut(s) 708
BsaJI CCNNGG 5 cut(s) 39, 75, 501, 550, 590
BsaWI WCCGGW 1 cut(s) 627
BsaXI ACNNNNNCTCC 4 cut(s) 716, 746, 960, 990
Bsc4I CCNNNNNNNGG 6 cut(s) 130, 318, 543, 616, 617, 789
Bse1I ACTGG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 1023
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 5 cut(s) 39, 75, 501, 550, 590
BseGI GGATG 2 cut(s) 342, 560
BseJI GATNNNNATC 1 cut(s) 1023
BseLI CCNNNNNNNGG 6 cut(s) 130, 318, 543, 616, 617, 789
BseNI ACTGG 1 cut(s) 11
BseRI GAGGAG 3 cut(s) 28, 474, 851
BseSI GKGCMC 3 cut(s) 550, 654, 1094
BseX3I CGGCCG 1 cut(s) 534
BseXI GCAGC 3 cut(s) 146, 518, 732
Bsh1236I CGCG 3 cut(s) 413, 444, 511
Bsh1285I CGRYCG 1 cut(s) 537
BshFI GGCC 9 cut(s) 11, 18, 44, 536, 548, 595, 1135, 1145, 1256
BshNI GGYRCC 1 cut(s) 496
BsiEI CGRYCG 1 cut(s) 537
BsiHKAI GWGCWC 1 cut(s) 439
BsiHKCI CYCGRG 4 cut(s) 233, 500, 653, 767
BsiSI CCGG 5 cut(s) 75, 245, 533, 611, 628
BslFI GGGAC 3 cut(s) 572, 783, 842
BslI CCNNNNNNNGG 6 cut(s) 130, 318, 543, 616, 617, 789
BsmAI GTCTC 3 cut(s) 55, 110, 708
BsmBI CGTCTC 1 cut(s) 55
BsmFI GGGAC 3 cut(s) 572, 783, 842
BsmI GAATGC 3 cut(s) 754, 922, 951
BsnI GGCC 9 cut(s) 11, 18, 44, 536, 548, 595, 1135, 1145, 1256
Bso31I GGTCTC 1 cut(s) 708
BsoBI CYCGRG 4 cut(s) 233, 500, 653, 767
Bsp119I TTCGAA 1 cut(s) 271
Bsp120I GGGCCC 1 cut(s) 546
Bsp1286I GDGCHC 4 cut(s) 439, 550, 654, 1094
Bsp1407I TGTACA 2 cut(s) 364, 557
Bsp143I GATC 5 cut(s) 308, 454, 630, 814, 1030
BspACI CCGC 5 cut(s) 89, 210, 249, 422, 465
BspANI GGCC 9 cut(s) 11, 18, 44, 536, 548, 595, 1135, 1145, 1256
BspFNI CGCG 3 cut(s) 413, 444, 511
BspHI TCATGA 1 cut(s) 1033
BspLI GGNNCC 6 cut(s) 37, 463, 498, 530, 548, 609
BspMI ACCTGC 1 cut(s) 690
BspPI GGATC 3 cut(s) 303, 638, 822
BspT104I TTCGAA 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 708
BsrGI TGTACA 2 cut(s) 364, 557
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 5 cut(s) 39, 75, 501, 550, 590
BssMI GATC 5 cut(s) 308, 454, 630, 814, 1030
BssSI CACGAG 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 550
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 3 cut(s) 49, 808, 982
Bst6I CTCTTC 3 cut(s) 399, 704, 768
BstAUI TGTACA 2 cut(s) 364, 557
BstBAI YACGTR 1 cut(s) 1232
BstBI TTCGAA 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 254
BstDSI CCRYGG 1 cut(s) 590
BstENI CCTNNNNNAGG 1 cut(s) 316
BstF5I GGATG 2 cut(s) 342, 560
BstFNI CGCG 3 cut(s) 413, 444, 511
BstHHI GCGC 3 cut(s) 164, 413, 511
BstKTI GATC 5 cut(s) 311, 457, 633, 817, 1033
BstMAI GTCTC 3 cut(s) 55, 110, 708
BstMBI GATC 5 cut(s) 308, 454, 630, 814, 1030
BstMCI CGRYCG 1 cut(s) 537
BstMWI GCNNNNNNNGC 4 cut(s) 419, 503, 517, 751
BstNI CCWGG 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 5 cut(s) 59, 74, 244, 531, 609
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 3 cut(s) 550, 654, 1094
BstSNI TACGTA 1 cut(s) 1232
BstUI CGCG 3 cut(s) 413, 444, 511
BstV1I GCAGC 3 cut(s) 146, 518, 732
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BstZI CGGCCG 1 cut(s) 534
BsuRI GGCC 9 cut(s) 11, 18, 44, 536, 548, 595, 1135, 1145, 1256
BtgI CCRYGG 1 cut(s) 590
BtsCI GGATG 2 cut(s) 342, 560
BtsIMutI CAGTG 1 cut(s) 987
BveI ACCTGC 1 cut(s) 690
Cac8I GCNNGC 1 cut(s) 254
CciI TCATGA 1 cut(s) 1033
CfoI GCGC 3 cut(s) 164, 413, 511
Cfr13I GGNCC 5 cut(s) 9, 546, 547, 607, 1255
CseI GACGC 1 cut(s) 450
Csp6I GTAC 8 cut(s) 21, 178, 238, 343, 365, 558, 625, 867
CspCI CAANNNNNGTGG 2 cut(s) 572, 607
CviAII CATG 6 cut(s) 350, 458, 493, 818, 1034, 1223
CviQI GTAC 8 cut(s) 21, 178, 238, 343, 365, 558, 625, 867
DpnI GATC 5 cut(s) 310, 456, 632, 816, 1032
DpnII GATC 5 cut(s) 308, 454, 630, 814, 1030
EaeI YGGCCR 2 cut(s) 42, 534
EagI CGGCCG 1 cut(s) 534
Eam1104I CTCTTC 3 cut(s) 399, 704, 768
EarI CTCTTC 3 cut(s) 399, 704, 768
EciI GGCGGA 1 cut(s) 437
EclXI CGGCCG 1 cut(s) 534
Eco105I TACGTA 1 cut(s) 1232
Eco130I CCWWGG 1 cut(s) 550
Eco147I AGGCCT 1 cut(s) 1145
Eco24I GRGCYC 1 cut(s) 550
Eco31I GGTCTC 1 cut(s) 708
Eco47I GGWCC 1 cut(s) 607
Eco52I CGGCCG 1 cut(s) 534
Eco57I CTGAAG 2 cut(s) 110, 728
Eco88I CYCGRG 4 cut(s) 233, 500, 653, 767
EcoNI CCTNNNNNAGG 1 cut(s) 316
EcoO109I RGGNCCY 2 cut(s) 547, 1255
EcoRII CCWGG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 550
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 6 cut(s) 353, 461, 496, 821, 1037, 1226
FaqI GGGAC 3 cut(s) 572, 783, 842
FatI CATG 6 cut(s) 349, 457, 492, 817, 1033, 1222
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 5 cut(s) 160, 211, 250, 507, 746
FokI GGATG 2 cut(s) 349, 567
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 5 cut(s) 160, 211, 250, 507, 746
FspBI CTAG 6 cut(s) 551, 738, 885, 1062, 1068, 1259
GlaI GCGC 3 cut(s) 163, 412, 510
GluI GCNGC 5 cut(s) 160, 211, 250, 507, 746
HaeIII GGCC 9 cut(s) 11, 18, 44, 536, 548, 595, 1135, 1145, 1256
HapII CCGG 5 cut(s) 75, 245, 533, 611, 628
HgaI GACGC 1 cut(s) 450
HhaI GCGC 3 cut(s) 164, 413, 511
Hin1II CATG 6 cut(s) 353, 461, 496, 821, 1037, 1226
Hin6I GCGC 3 cut(s) 162, 411, 509
HinP1I GCGC 3 cut(s) 162, 411, 509
HinfI GANTC 4 cut(s) 71, 296, 658, 779
HpaII CCGG 5 cut(s) 75, 245, 533, 611, 628
HphI GGTGA 5 cut(s) 103, 409, 464, 656, 988
Hpy166II GTNNAC 2 cut(s) 150, 300
Hpy188I TCNGA 3 cut(s) 262, 607, 708
Hpy188III TCNNGA 4 cut(s) 568, 767, 1028, 1034
Hpy8I GTNNAC 2 cut(s) 150, 300
Hpy99I CGWCG 3 cut(s) 444, 931, 934
HpyAV CCTTC 4 cut(s) 134, 267, 894, 1135
HpyCH4III ACNGT 3 cut(s) 49, 808, 982
HpyCH4IV ACGT 3 cut(s) 926, 999, 1231
HpyCH4V TGCA 2 cut(s) 340, 1222
HpyF10VI GCNNNNNNNGC 4 cut(s) 419, 503, 517, 751
HpySE526I ACGT 3 cut(s) 926, 999, 1231
Hsp92II CATG 6 cut(s) 353, 461, 496, 821, 1037, 1226
HspAI GCGC 3 cut(s) 162, 411, 509
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 5 cut(s) 308, 454, 630, 814, 1030
LmnI GCTCC 3 cut(s) 41, 133, 467
Lsp1109I GCAGC 3 cut(s) 146, 518, 732
LweI GCATC 3 cut(s) 327, 835, 1009
MaeI CTAG 6 cut(s) 551, 738, 885, 1062, 1068, 1259
MaeII ACGT 3 cut(s) 926, 999, 1231
MaeIII GTNAC 4 cut(s) 371, 383, 397, 976
MalI GATC 5 cut(s) 310, 456, 632, 816, 1032
MboI GATC 5 cut(s) 308, 454, 630, 814, 1030
MboII GAAGA 6 cut(s) 416, 721, 755, 785, 1028, 1049
MfeI CAATTG 1 cut(s) 952
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 4 cut(s) 439, 550, 654, 1094
MluI ACGCGT 1 cut(s) 442
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 2 cut(s) 770, 792
MseI TTAA 6 cut(s) 290, 378, 1002, 1251, 1263, 1267
MslI CAYNNNNRTG 3 cut(s) 354, 806, 1038
MspI CCGG 5 cut(s) 75, 245, 533, 611, 628
MspR9I CCNGG 5 cut(s) 61, 76, 246, 533, 611
MunI CAATTG 1 cut(s) 952
Mva1269I GAATGC 3 cut(s) 754, 922, 951
MvaI CCWGG 1 cut(s) 61
MvnI CGCG 3 cut(s) 413, 444, 511
MwoI GCNNNNNNNGC 4 cut(s) 419, 503, 517, 751
NciI CCSGG 4 cut(s) 76, 246, 533, 611
NdeII GATC 5 cut(s) 308, 454, 630, 814, 1030
NlaIII CATG 6 cut(s) 353, 461, 496, 821, 1037, 1226
NlaIV GGNNCC 6 cut(s) 37, 463, 498, 530, 548, 609
NmeAIII GCCGAG 1 cut(s) 20
NmuCI GTSAC 4 cut(s) 371, 383, 397, 976
NspI RCATGY 1 cut(s) 353
NspV TTCGAA 1 cut(s) 271
OliI CACNNNNGTG 1 cut(s) 806
PacI TTAATTAA 1 cut(s) 1267
PaeR7I CTCGAG 2 cut(s) 233, 767
PagI TCATGA 1 cut(s) 1033
PaqCI CACCTGC 1 cut(s) 690
PceI AGGCCT 1 cut(s) 1145
PctI GAATGC 3 cut(s) 754, 922, 951
PfeI GAWTC 3 cut(s) 71, 658, 779
PkrI GCNGC 5 cut(s) 161, 212, 251, 508, 747
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
Ppu21I YACGTR 1 cut(s) 1232
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 6 cut(s) 37, 463, 498, 530, 548, 609
PspOMI GGGCCC 1 cut(s) 546
PspPI GGNCC 5 cut(s) 9, 546, 547, 607, 1255
PspXI VCTCGAGB 1 cut(s) 233
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 8 cut(s) 22, 179, 239, 344, 366, 559, 626, 868
RsaNI GTAC 8 cut(s) 21, 178, 238, 343, 365, 558, 625, 867
RseI CAYNNNNRTG 3 cut(s) 354, 806, 1038
SaqAI TTAA 6 cut(s) 290, 378, 1002, 1251, 1263, 1267
SatI GCNGC 5 cut(s) 160, 211, 250, 507, 746
Sau3AI GATC 5 cut(s) 308, 454, 630, 814, 1030
Sau96I GGNCC 5 cut(s) 9, 546, 547, 607, 1255
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 5 cut(s) 61, 76, 246, 533, 611
SduI GDGCHC 4 cut(s) 439, 550, 654, 1094
SfaNI GCATC 3 cut(s) 327, 835, 1009
SfcI CTRYAG 1 cut(s) 54
Sfr274I CTCGAG 2 cut(s) 233, 767
SfuI TTCGAA 1 cut(s) 271
SinI GGWCC 1 cut(s) 607
SlaI CTCGAG 2 cut(s) 233, 767
SmiMI CAYNNNNRTG 3 cut(s) 354, 806, 1038
SmlI CTYRAG 3 cut(s) 233, 749, 767
SmoI CTYRAG 3 cut(s) 233, 749, 767
SnaBI TACGTA 1 cut(s) 1232
SseBI AGGCCT 1 cut(s) 1145
SsiI CCGC 5 cut(s) 89, 210, 249, 422, 465
SspI AATATT 1 cut(s) 391
SspMI CTAG 6 cut(s) 551, 738, 885, 1062, 1068, 1259
StuI AGGCCT 1 cut(s) 1145
StyD4I CCNGG 5 cut(s) 59, 74, 244, 531, 609
StyI CCWWGG 1 cut(s) 550
TaaI ACNGT 3 cut(s) 49, 808, 982
TaiI ACGT 3 cut(s) 929, 1002, 1234
TaqI TCGA 6 cut(s) 234, 271, 439, 567, 768, 1242
TatI WGTACW 2 cut(s) 364, 557
TauI GCSGC 2 cut(s) 213, 252
TfiI GAWTC 3 cut(s) 71, 658, 779
Tru1I TTAA 6 cut(s) 290, 378, 1002, 1251, 1263, 1267
Tru9I TTAA 6 cut(s) 290, 378, 1002, 1251, 1263, 1267
TscAI CASTG 1 cut(s) 987
TseFI GTSAC 4 cut(s) 371, 383, 397, 976
TseI GCWGC 3 cut(s) 159, 506, 745
Tsp45I GTSAC 4 cut(s) 371, 383, 397, 976
TspDTI ATGAA 4 cut(s) 17, 279, 1050, 1139
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 1 cut(s) 987
VpaK11BI GGWCC 1 cut(s) 607
XagI CCTNNNNNAGG 1 cut(s) 316
XapI RAATTY 5 cut(s) 689, 877, 1057, 1150, 1205
XceI RCATGY 1 cut(s) 353
XcmI CCANNNNNNNNNTGG 2 cut(s) 726, 808
XhoI CTCGAG 2 cut(s) 233, 767
XmaJI CCTAGG 1 cut(s) 550
XspI CTAG 6 cut(s) 551, 738, 885, 1062, 1068, 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.