Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012851

Physical Location & Seq

Genomic Coordinates Forward (+)

2475400 .. 2476035

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G022300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCCATTGGGCGGACTCCGTGGCCTTGTGTTTCTGCCCCTGTATCGGCCATGTACCTAATCGGGTTTTCAGTGTTTGATGAAGTGTCGGAGATACCTAGCTCTCTGTCGAAGCAAGGCAGGGACTTTGTCACCAAGTGTTTGATGAGGGACCCAATGGAAAGGTGGTCAGCTGTTGAGCTTCTCAAGCATGGATTTTTACTTGAGGCACCCAATTATTTGCTCAATCCCACAACTGTGCTAGATCATGGTTTGTGGGATGAGGAGTTTGATTTGGATTTGGAAGACATTTGGGAACCGACCCATCAAATGACCAATTGGCCTTGTGATGATGAAGATACTTGGGTCACAATGAGAAGCAACAACATTGAACAACCAGATACGACGCTCCATTGGAATGAATATGAAGCCAATGATATTTATGACGACGAGCCTCAGCCAACAAACACAAATGCAAAAACTACTTGTGGTGGTGGGTTGGGTTTAGACACTAGTGAGGCAGCTAGATTTAGCAGTAGAGAGAGGAAGAAAAGCAAGGCTTGGACGGCCTCCAAATATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

188

Amino Acids

21.36

Weight (kDa)

4.48

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26890 AT5G55090 AT5G55090
fragaria_vesca	FvH4_3g01720
malus_domestica	MD05G1349600.v1.1 MD10G1324300.v1.1
prunus_persica	Prupe.4G017800_v2.0.a1 Prupe.5G022300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0002581
rosa_laevigata	RLG00000031041
rosa_multiflora	Rmu_co8355711.1_g000001 Rmu_sc0009084.1_g000001
rosa_rugosa	Rorug04G0397000
rosa_samantha	Rh5AG020500 Rh5BG023200 Rh5CG022500 Rh5DG021600
rosa_wichuraiana	Rw5G001890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	208
AciI	CCGC	1 cut(s)	13
AcoI	YGGCCR	2 cut(s)	3, 48
AdeI	CACNNNGTG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	12, 46
AgsI	TTSAA	1 cut(s)	371
AhlI	ACTAGT	1 cut(s)	491
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	4 cut(s)	102, 173, 181, 503
AluI	AGCT	4 cut(s)	102, 173, 181, 503
AoxI	GGCC	5 cut(s)	3, 23, 48, 320, 546
ApeKI	GCWGC	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	151
BaeI	ACNNNNGTAYC	2 cut(s)	330, 363
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	512
BccI	CCATC	1 cut(s)	312
BceAI	ACGGC	1 cut(s)	561
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	4 cut(s)	99, 242, 492, 504
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	4 cut(s)	152, 153, 210, 297
BpiI	GAAGAC	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	2 cut(s)	170, 224
BsaJI	CCNNGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 46
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	12, 46
BseMII	CTCAG	1 cut(s)	449
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	512
BshFI	GGCC	5 cut(s)	5, 25, 50, 322, 548
BshNI	GGYRCC	1 cut(s)	208
BslFI	GGGAC	2 cut(s)	137, 164
BslI	CCNNNNNNNGG	2 cut(s)	12, 46
BsmFI	GGGAC	2 cut(s)	137, 164
BsnI	GGCC	5 cut(s)	5, 25, 50, 322, 548
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	5 cut(s)	5, 25, 50, 322, 548
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	4 cut(s)	152, 153, 210, 297
BspT107I	GGYRCC	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 545
BstV1I	GCAGC	1 cut(s)	512
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	5 cut(s)	5, 25, 50, 322, 548
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	151
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	3 cut(s)	52, 191, 248
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
DraIII	CACNNNGTG	1 cut(s)	138
EaeI	YGGCCR	2 cut(s)	3, 48
EciI	GGCGGA	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	151
FaeI	CATG	3 cut(s)	55, 194, 251
FaiI	YATR	6 cut(s)	53, 192, 249, 405, 423, 558
FalI	AAGNNNNNCTT	2 cut(s)	523, 555
FaqI	GGGAC	2 cut(s)	137, 164
FatI	CATG	3 cut(s)	51, 190, 247
Fnu4HI	GCNGC	1 cut(s)	501
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	4 cut(s)	99, 242, 492, 504
GluI	GCNGC	1 cut(s)	501
HaeIII	GGCC	5 cut(s)	5, 25, 50, 322, 548
HgaI	GACGC	1 cut(s)	394
Hin1II	CATG	3 cut(s)	55, 194, 251
HinfI	GANTC	1 cut(s)	16
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	388, 431
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	1 cut(s)	455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 545
HpyF3I	CTNAG	1 cut(s)	435
Hsp92II	CATG	3 cut(s)	55, 194, 251
KflI	GGGWCCC	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	393
LpnPI	CCDG	3 cut(s)	54, 106, 390
Lsp1109I	GCAGC	1 cut(s)	512
MaeI	CTAG	4 cut(s)	99, 242, 492, 504
MaeIII	GTNAC	2 cut(s)	130, 346
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	3 cut(s)	296, 347, 538
MfeI	CAATTG	1 cut(s)	316
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	214, 316
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	7 cut(s)	141, 199, 256, 444, 490, 516, 559
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	562
MslI	CAYNNNNRTG	2 cut(s)	236, 396
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	187, 545
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	3 cut(s)	55, 194, 251
NlaIV	GGNNCC	4 cut(s)	152, 153, 210, 297
NmuCI	GTSAC	2 cut(s)	130, 346
OliI	CACNNNNGTG	1 cut(s)	236
PflFI	GACNNNGTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	502
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
PspN4I	GGNNCC	4 cut(s)	152, 153, 210, 297
PspPI	GGNCC	1 cut(s)	151
PspPPI	RGGWCCY	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	236, 396
SaqAI	TTAA	1 cut(s)	562
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	1 cut(s)	10
SetI	ASST	7 cut(s)	60, 100, 104, 167, 175, 183, 505
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	236, 396
SmlI	CTYRAG	2 cut(s)	185, 203
SmoI	CTYRAG	2 cut(s)	185, 203
SpeI	ACTAGT	1 cut(s)	491
Sse9I	AATT	2 cut(s)	214, 316
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	4 cut(s)	99, 242, 492, 504
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	214, 316
Tru1I	TTAA	1 cut(s)	562
Tru9I	TTAA	1 cut(s)	562
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	130, 346
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	2 cut(s)	130, 346
TspDTI	ATGAA	4 cut(s)	96, 348, 414, 420
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	1 cut(s)	78
Tth111I	GACNNNGTC	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	162
XspI	CTAG	4 cut(s)	99, 242, 492, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.