AT5G55135

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
22379921 .. 22380476
556 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55135.1

Sequence Viewer

Length: 339 bp
ATGTTGAGAAATTATGTGAACCCAAAATCAATCTCCAAGCCTAATATAACAACATCATGTATTTACTCTTTTTATCTCAAGAGAGGAAGTGCGAGTGGAGGGAGGGAAGAAGGAAGAGCTTCTTCGACGGCGGAGGAGTTCACAAGACAAGGTGTTGCTAGCCAAACAGTTGAGAAGGCTTTTGACGGAGCTGCGGTGGCGGTAAACGTCTCCGGTGATTCTGAGGCGGATGTGGAGAAGGTGAAAGAGGCGTTTTTAGATAAGAAAGACTATAATTATAAGAAGAGACCTGAGGATGATGATGATGGTTTGCCTATCAACACGGCTAAAGGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.2

Weight (kDa)

5.51

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55135
fragaria_vesca FvH4_3g23370
malus_domestica MD03G1195000.v1.1
prunus_persica Prupe.4G221600_v2.0.a1
pyrus_communis pycom03g14710
rosa_chinensis RchiOBHm_Chr5g0041161
rosa_laevigata RLG00000034032
rosa_multiflora Rmu_sc0007618.1_g000020
rosa_roxburghii Rroxscaffold_1G00039490
rosa_rugosa Rorug05G0190200
rosa_samantha Rh5AG276100 Rh5BG281000 Rh5CG313200 Rh5DG289100
rosa_wichuraiana Rw5G025970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 279
AciI CCGC 4 cut(s) 131, 194, 200, 227
AluBI AGCT 2 cut(s) 119, 191
AluI AGCT 2 cut(s) 119, 191
Alw26I GTCTC 2 cut(s) 214, 280
ApeKI GCWGC 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 118
AsuHPI GGTGA 2 cut(s) 227, 253
AsuNHI GCTAGC 1 cut(s) 158
AxyI CCTNAGG 1 cut(s) 291
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 214, 280
BfaI CTAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
BmtI GCTAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bse21I CCTNAGG 1 cut(s) 291
BseGI GGATG 2 cut(s) 235, 301
BseMII CTCAG 2 cut(s) 213, 282
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 213
BsmAI GTCTC 2 cut(s) 214, 280
BsmBI CGTCTC 1 cut(s) 214
Bso31I GGTCTC 1 cut(s) 280
BspACI CCGC 4 cut(s) 131, 194, 200, 227
BspCNI CTCAG 2 cut(s) 214, 283
BspOI GCTAGC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 2 cut(s) 109, 278
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 222, 291
BstF5I GGATG 2 cut(s) 235, 301
BstMAI GTCTC 2 cut(s) 214, 280
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 178
Bsu36I CCTNAGG 1 cut(s) 291
BtsCI GGATG 2 cut(s) 235, 301
Cac8I GCNNGC 1 cut(s) 160
CviAII CATG 1 cut(s) 57
CviJI RGCY 6 cut(s) 40, 119, 162, 179, 191, 326
CviKI_1 RGCY 6 cut(s) 40, 119, 162, 179, 191, 326
DdeI CTNAG 2 cut(s) 222, 291
Eam1104I CTCTTC 2 cut(s) 109, 278
EarI CTCTTC 2 cut(s) 109, 278
EciI GGCGGA 2 cut(s) 146, 242
Eco31I GGTCTC 1 cut(s) 280
Eco81I CCTNAGG 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 1 cut(s) 60
FaiI YATR 6 cut(s) 15, 47, 58, 273, 279, 337
FalI AAGNNNNNCTT 2 cut(s) 106, 138
FatI CATG 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 2 cut(s) 242, 308
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 1 cut(s) 159
GluI GCNGC 1 cut(s) 192
HapII CCGG 1 cut(s) 213
Hin1II CATG 1 cut(s) 60
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 213
HphI GGTGA 2 cut(s) 227, 253
Hpy166II GTNNAC 3 cut(s) 19, 141, 205
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 3 cut(s) 19, 141, 205
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 3 cut(s) 104, 169, 232
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 222, 291
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 1 cut(s) 60
LguI GCTCTTC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 2 cut(s) 226, 303
Lsp1109I GCAGC 1 cut(s) 178
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 207
MboII GAAGA 4 cut(s) 114, 119, 126, 295
MluCI AATT 2 cut(s) 10, 274
MnlI CCTC 7 cut(s) 77, 92, 96, 127, 217, 241, 286
MroXI GAANNNNTTC 1 cut(s) 118
MspI CCGG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 197
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 193
PsiI TTATAA 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 109
SatI GCNGC 1 cut(s) 192
SetI ASST 6 cut(s) 121, 154, 193, 210, 243, 292
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 10, 274
SsiI CCGC 4 cut(s) 131, 194, 200, 227
SspMI CTAG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 125
TasI AATT 2 cut(s) 10, 274
TfiI GAWTC 1 cut(s) 218
TseI GCWGC 1 cut(s) 191
TspGWI ACGGA 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.