Prupe.4G221600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016023
Physical Location & Seq
Forward (+)
13921676 .. 13922761
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G221600.1

Sequence Viewer

Length: 531 bp
ATGCTCCAGAATGAAATGGCAAATCCACACAGTACCACGTTTGTGTACCAGGAGACACGTGTACGCCAACATCTCAGCATTGTCATTTCTTCTGTTTTCTTCATAATCCATATGCCTTGGAAACTTCCTTCATTTGTCTGTGTCTTATTGCAATCTGAGAGCTGGTGTTCAGCCATGAGAGGCCATCTTTTTCCTCTGCACACCTTCTCATCAAGGTCCTCCTCACTTTTGAGGTCCTTAACAGCATGCCACAACCAGAGGTACCAAAGCAGTCAAGTTAGCAAGGGAGAGCACAGCAGCCACATGAATATAGAAGAGAGAGCACCTTCAACAGCTGAGGAGTTCAAAAGAGTTGCTGAGGAGAAGCTGAAGAAGGCAGAGCAAGGTGTAGCTAGTCAAACTGCTGACAAGACATGTGATGCGACAGAGGAAACTACCTTGGGTGACTCCAGCGTTGACTCTGTCAAGAACAGGTTCAAGCAACATGAACCTGGTGCTGCTGATTACAGAAGGAGGTCACATGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.01

Weight (kDa)

7.16

Isoelectric Point (pI)

74.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55135
fragaria_vesca FvH4_3g23370
malus_domestica MD03G1195000.v1.1
prunus_persica Prupe.4G221600_v2.0.a1
pyrus_communis pycom03g14710
rosa_chinensis RchiOBHm_Chr5g0041161
rosa_laevigata RLG00000034032
rosa_multiflora Rmu_sc0007618.1_g000020
rosa_roxburghii Rroxscaffold_1G00039490
rosa_rugosa Rorug05G0190200
rosa_samantha Rh5AG276100 Rh5BG281000 Rh5CG313200 Rh5DG289100
rosa_wichuraiana Rw5G025970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 389
AcvI CACGTG 1 cut(s) 59
AfaI GTAC 4 cut(s) 34, 47, 63, 263
AflIII ACRYGT 3 cut(s) 56, 58, 413
AgsI TTSAA 3 cut(s) 330, 346, 478
AjnI CCWGG 2 cut(s) 48, 490
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 4 cut(s) 162, 335, 367, 392
AluI AGCT 4 cut(s) 162, 335, 367, 392
Alw21I GWGCWC 2 cut(s) 294, 325
Alw26I GTCTC 1 cut(s) 47
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 2 cut(s) 297, 497
Asp700I GAANNNNTTC 1 cut(s) 473
Asp718I GGTACC 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 216, 234
AsuHPI GGTGA 1 cut(s) 455
AvaII GGWCC 2 cut(s) 216, 234
BanI GGYRCC 1 cut(s) 261
BbrPI CACGTG 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 294, 325
BbvCI CCTCAGC 2 cut(s) 336, 357
BbvI GCAGC 2 cut(s) 309, 484
BccI CCATC 1 cut(s) 192
BciT130I CCWGG 2 cut(s) 50, 492
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 1 cut(s) 393
BisI GCNGC 2 cut(s) 298, 498
BlsI GCNGC 2 cut(s) 299, 499
Bme1390I CCNGG 2 cut(s) 50, 492
Bme18I GGWCC 2 cut(s) 216, 234
BmgT120I GGNCC 2 cut(s) 216, 234
BmiI GGNNCC 1 cut(s) 263
BmrFI CCNGG 2 cut(s) 50, 492
BmsI GCATC 1 cut(s) 409
BpmI CTGGAG 1 cut(s) 433
Bpu10I CCTNAGC 2 cut(s) 336, 357
BsaAI YACGTR 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 116, 438
BseBI CCWGG 2 cut(s) 50, 492
BseDI CCNNGG 2 cut(s) 116, 438
BseMII CTCAG 4 cut(s) 88, 147, 327, 348
BseRI GAGGAG 3 cut(s) 211, 353, 374
BseXI GCAGC 2 cut(s) 309, 484
BsgI GTGCAG 1 cut(s) 182
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 261
BsiHKAI GWGCWC 2 cut(s) 294, 325
BsmAI GTCTC 1 cut(s) 47
BsnI GGCC 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 294, 325
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 4 cut(s) 87, 148, 328, 349
BspLI GGNNCC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 116, 438
BssT1I CCWWGG 2 cut(s) 116, 438
Bst2UI CCWGG 2 cut(s) 50, 492
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 309
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 4 cut(s) 74, 156, 336, 357
BstMAI GTCTC 1 cut(s) 47
BstNI CCWGG 2 cut(s) 50, 492
BstNSI RCATGY 2 cut(s) 249, 417
BstSCI CCNGG 2 cut(s) 48, 490
BstV1I GCAGC 2 cut(s) 309, 484
BsuRI GGCC 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 216, 234
CsiI ACCWGGT 1 cut(s) 490
Csp6I GTAC 4 cut(s) 33, 46, 62, 262
CviAII CATG 6 cut(s) 175, 246, 304, 414, 485, 521
CviJI RGCY 7 cut(s) 162, 173, 183, 300, 335, 367, 392
CviKI_1 RGCY 7 cut(s) 162, 173, 183, 300, 335, 367, 392
CviQI GTAC 4 cut(s) 33, 46, 62, 262
DdeI CTNAG 4 cut(s) 74, 156, 336, 357
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco130I CCWWGG 2 cut(s) 116, 438
Eco47I GGWCC 2 cut(s) 216, 234
Eco57I CTGAAG 1 cut(s) 389
Eco72I CACGTG 1 cut(s) 59
EcoO109I RGGNCCY 2 cut(s) 216, 234
EcoRII CCWGG 2 cut(s) 48, 490
EcoT14I CCWWGG 2 cut(s) 116, 438
ErhI CCWWGG 2 cut(s) 116, 438
FaeI CATG 6 cut(s) 178, 249, 307, 417, 488, 524
FatI CATG 6 cut(s) 174, 245, 303, 413, 484, 520
FauNDI CATATG 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 298, 498
Fsp4HI GCNGC 2 cut(s) 298, 498
FspBI CTAG 1 cut(s) 393
GluI GCNGC 2 cut(s) 298, 498
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 1 cut(s) 183
Hin1II CATG 6 cut(s) 178, 249, 307, 417, 488, 524
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 2 cut(s) 446, 458
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 3 cut(s) 46, 62, 457
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 7, 466
Hpy8I GTNNAC 3 cut(s) 46, 62, 457
HpyAV CCTTC 5 cut(s) 138, 214, 336, 367, 504
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 2 cut(s) 38, 58
HpyCH4V TGCA 2 cut(s) 151, 199
HpyF3I CTNAG 4 cut(s) 74, 156, 336, 357
HpySE526I ACGT 2 cut(s) 38, 58
Hsp92II CATG 6 cut(s) 178, 249, 307, 417, 488, 524
KpnI GGTACC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 9 cut(s) 20, 35, 62, 148, 269, 457, 463, 477, 504
Lsp1109I GCAGC 2 cut(s) 309, 484
LweI GCATC 1 cut(s) 409
MabI ACCWGGT 1 cut(s) 490
MaeI CTAG 1 cut(s) 393
MaeII ACGT 2 cut(s) 38, 58
MaeIII GTNAC 2 cut(s) 443, 516
MboII GAAGA 4 cut(s) 81, 91, 326, 382
MhlI GDGCHC 2 cut(s) 294, 325
MlyI GAGTC 2 cut(s) 440, 452
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 335
MspR9I CCNGG 2 cut(s) 50, 492
MvaI CCWGG 2 cut(s) 50, 492
NdeI CATATG 1 cut(s) 111
NlaIII CATG 6 cut(s) 178, 249, 307, 417, 488, 524
NlaIV GGNNCC 1 cut(s) 263
NmuCI GTSAC 2 cut(s) 443, 516
NspI RCATGY 2 cut(s) 249, 417
OliI CACNNNNGTG 1 cut(s) 41
PaeI GCATGC 1 cut(s) 249
PciI ACATGT 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 473
PflFI GACNNNGTC 1 cut(s) 461
PkrI GCNGC 2 cut(s) 299, 499
PleI GAGTC 2 cut(s) 440, 452
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 2 cut(s) 440, 452
Ppu21I YACGTR 1 cut(s) 59
PpuMI RGGWCCY 2 cut(s) 216, 234
PscI ACATGT 1 cut(s) 413
Psp5II RGGWCCY 2 cut(s) 216, 234
Psp6I CCWGG 2 cut(s) 48, 490
PspCI CACGTG 1 cut(s) 59
PspGI CCWGG 2 cut(s) 48, 490
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 2 cut(s) 216, 234
PspPPI RGGWCCY 2 cut(s) 216, 234
PsyI GACNNNGTC 1 cut(s) 461
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 4 cut(s) 34, 47, 63, 263
RsaNI GTAC 4 cut(s) 33, 46, 62, 262
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 2 cut(s) 298, 498
Sau96I GGNCC 2 cut(s) 216, 234
SchI GAGTC 2 cut(s) 440, 452
ScrFI CCNGG 2 cut(s) 50, 492
SduI GDGCHC 2 cut(s) 294, 325
SexAI ACCWGGT 1 cut(s) 490
SfaNI GCATC 1 cut(s) 409
SinI GGWCC 2 cut(s) 216, 234
SmiMI CAYNNNNRTG 1 cut(s) 41
SphI GCATGC 1 cut(s) 249
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 2 cut(s) 48, 490
StyI CCWWGG 2 cut(s) 116, 438
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 2 cut(s) 41, 61
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseFI GTSAC 2 cut(s) 443, 516
TseI GCWGC 2 cut(s) 297, 497
Tsp45I GTSAC 2 cut(s) 443, 516
TspDTI ATGAA 5 cut(s) 27, 91, 120, 320, 501
Tth111I GACNNNGTC 1 cut(s) 461
VpaK11BI GGWCC 2 cut(s) 216, 234
XceI RCATGY 2 cut(s) 249, 417
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.