Rh5AG276100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016023
Physical Location & Seq
Forward (+)
37051064 .. 37052891
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG276100.1

Sequence Viewer

Length: 375 bp
ATGAGAAGCCATCTTCTTCCCCTCTCATCATCCTCAAGATCCTTGCTTTTCAGGTCCTTAACATCATCACCGTCATCGTCATCATCATCATCATCATGTAGTCCCCCTAACCAGTTTGGGAGATGTTATAGTGGCAGCCATGGCCAGGGGGAGCAGGAGATGACTAGAGCGCCATCGACAGCAGAAGAGTTCAAGAGAGTTGCAGAGGAGAAGCTGAAGGAAGCCGAGCAAGGCGTGGCCAGTCAGACCTTTGAGAAGACTTATGATGGCATTGAGGAGGCTACTGTAGGCGACGCCAAAATTGAGTCCGTCAAGGAAAGGTACAAGCAGCATGAACCGGGGCCTGACTACCGTAGGAGGCCAGATCATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.76

Weight (kDa)

6.1

Isoelectric Point (pI)

87.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55135
fragaria_vesca FvH4_3g23370
malus_domestica MD03G1195000.v1.1
prunus_persica Prupe.4G221600_v2.0.a1
pyrus_communis pycom03g14710
rosa_chinensis RchiOBHm_Chr5g0041161
rosa_laevigata RLG00000034032
rosa_multiflora Rmu_sc0007618.1_g000020
rosa_roxburghii Rroxscaffold_1G00039490
rosa_rugosa Rorug05G0190200
rosa_samantha Rh5AG276100 Rh5BG281000 Rh5CG313200 Rh5DG289100
rosa_wichuraiana Rw5G025970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 2 cut(s) 142, 237
AcuI CTGAAG 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 1 cut(s) 193
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
AlwI GGATC 1 cut(s) 33
AoxI GGCC 4 cut(s) 142, 237, 341, 359
ApeKI GCWGC 2 cut(s) 135, 328
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 54, 341
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 60
AvaII GGWCC 1 cut(s) 54
BalI TGGCCA 2 cut(s) 144, 239
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 2 cut(s) 147, 340
BccI CCATC 3 cut(s) 18, 181, 260
BciT130I CCWGG 1 cut(s) 146
BcnI CCSGG 1 cut(s) 339
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 285
BfoI RGCGCY 1 cut(s) 173
BisI GCNGC 2 cut(s) 136, 329
BlsI GCNGC 2 cut(s) 137, 330
Bme1390I CCNGG 2 cut(s) 146, 339
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 2 cut(s) 54, 341
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 2 cut(s) 146, 339
BpiI GAAGAC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 19
BpuMI CCSGG 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 139, 145, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 2 cut(s) 112, 240
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 3 cut(s) 139, 145, 338
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 145
BseNI ACTGG 2 cut(s) 112, 240
BseRI GAGGAG 2 cut(s) 221, 290
BseXI GCAGC 2 cut(s) 147, 340
BshFI GGCC 4 cut(s) 144, 239, 343, 361
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 4 cut(s) 144, 239, 343, 361
Bsp143I GATC 2 cut(s) 38, 364
Bsp19I CCATGG 1 cut(s) 139
BspANI GGCC 4 cut(s) 144, 239, 343, 361
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 342
BspPI GGATC 1 cut(s) 33
BsrI ACTGG 2 cut(s) 112, 240
BssECI CCNNGG 3 cut(s) 139, 145, 338
BssMI GATC 2 cut(s) 38, 364
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 3 cut(s) 72, 286, 353
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 2 cut(s) 41, 367
BstMBI GATC 2 cut(s) 38, 364
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 144, 337
BstSFI CTRYAG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 147, 340
BstV2I GAAGAC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 4 cut(s) 144, 239, 343, 361
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 1 cut(s) 29
CciI TCATGA 1 cut(s) 367
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 54, 341
CseI GACGC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 322
CviAII CATG 4 cut(s) 96, 140, 332, 368
CviJI RGCY 9 cut(s) 9, 138, 144, 214, 224, 239, 281, 343, 361
CviKI_1 RGCY 9 cut(s) 9, 138, 144, 214, 224, 239, 281, 343, 361
CviQI GTAC 1 cut(s) 322
DpnI GATC 2 cut(s) 40, 366
DpnII GATC 2 cut(s) 38, 364
EaeI YGGCCR 2 cut(s) 142, 237
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 236
EcoO109I RGGNCCY 2 cut(s) 54, 341
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 4 cut(s) 99, 143, 335, 371
FaiI YATR 6 cut(s) 97, 129, 141, 264, 333, 369
FaqI GGGAC 1 cut(s) 87
FatI CATG 4 cut(s) 95, 139, 331, 367
Fnu4HI GCNGC 2 cut(s) 136, 329
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 2 cut(s) 136, 329
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 171
GluI GCNGC 2 cut(s) 136, 329
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 4 cut(s) 144, 239, 343, 361
HapII CCGG 1 cut(s) 338
HgaI GACGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 4 cut(s) 99, 143, 335, 371
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 1 cut(s) 305
HpaII CCGG 1 cut(s) 338
HphI GGTGA 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 3 cut(s) 36, 193, 368
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 3 cut(s) 72, 286, 353
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 4 cut(s) 99, 143, 335, 371
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 2 cut(s) 38, 364
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 8 cut(s) 37, 125, 131, 140, 158, 253, 351, 357
Lsp1109I GCAGC 2 cut(s) 147, 340
MaeI CTAG 1 cut(s) 165
MalI GATC 2 cut(s) 40, 366
MboI GATC 2 cut(s) 38, 364
MboII GAAGA 4 cut(s) 5, 8, 197, 268
MflI RGATCY 1 cut(s) 38
MlsI TGGCCA 2 cut(s) 144, 239
MluCI AATT 1 cut(s) 300
MluNI TGGCCA 2 cut(s) 144, 239
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 6 cut(s) 32, 43, 199, 268, 271, 351
Mox20I TGGCCA 2 cut(s) 144, 239
MscI TGGCCA 2 cut(s) 144, 239
MseI TTAA 2 cut(s) 59, 373
MslI CAYNNNNRTG 1 cut(s) 94
Msp20I TGGCCA 2 cut(s) 144, 239
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 2 cut(s) 146, 339
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 141
NciI CCSGG 1 cut(s) 339
NcoI CCATGG 1 cut(s) 139
NdeII GATC 2 cut(s) 38, 364
NlaIII CATG 4 cut(s) 99, 143, 335, 371
NlaIV GGNNCC 1 cut(s) 342
NmeAIII GCCGAG 1 cut(s) 250
PagI TCATGA 1 cut(s) 367
PkrI GCNGC 2 cut(s) 137, 330
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PpuMI RGGWCCY 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 2 cut(s) 54, 341
PspPPI RGGWCCY 1 cut(s) 54
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 94
SaqAI TTAA 2 cut(s) 59, 373
SatI GCNGC 2 cut(s) 136, 329
Sau3AI GATC 2 cut(s) 38, 364
Sau96I GGNCC 2 cut(s) 54, 341
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 2 cut(s) 146, 339
SetI ASST 4 cut(s) 56, 216, 251, 323
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 1 cut(s) 300
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 144, 337
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 3 cut(s) 72, 286, 353
TaqI TCGA 1 cut(s) 176
TasI AATT 1 cut(s) 300
Tru1I TTAA 2 cut(s) 59, 373
Tru9I TTAA 2 cut(s) 59, 373
TseI GCWGC 2 cut(s) 135, 328
TspDTI ATGAA 1 cut(s) 348
TspGWI ACGGA 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 54
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.