Rroxscaffold_1G00039490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016023
Physical Location & Seq
Reverse (-)
57155847 .. 57156383
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039490.1

Sequence Viewer

Length: 351 bp
ATGAGAAGCCATCTTCTTCCCCTCTCATCATCCTCAAGATCCTTGCTCTTCAGGTCCTTAACATCACCACCATCATCATCATCATCATCGTGTAGTCCTTCTAACCAGTGGCAGCCATGGCCAGGGGAGCAGGAGATCACTAGAGCGCCATCGACAGCAGAAGAGTTCAAGAGAGTTGCAGAGGAGAAGCTGAAGGAAGCCGAGCAACGCGTGGCCAATCAGACCTTTGAGAAGACTTATGATGGCATGGAGGAGGCTACTGTAGGCGACGCCAAAATTGAGTCCGTCAAGGAAAGGTACAAGCAGCATAAACCGGGAGCTGACTACCGTGGGAGGCCAGATGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.08

Weight (kDa)

5.75

Isoelectric Point (pI)

77.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55135
fragaria_vesca FvH4_3g23370
malus_domestica MD03G1195000.v1.1
prunus_persica Prupe.4G221600_v2.0.a1
pyrus_communis pycom03g14710
rosa_chinensis RchiOBHm_Chr5g0041161
rosa_laevigata RLG00000034032
rosa_multiflora Rmu_sc0007618.1_g000020
rosa_roxburghii Rroxscaffold_1G00039490
rosa_rugosa Rorug05G0190200
rosa_samantha Rh5AG276100 Rh5BG281000 Rh5CG313200 Rh5DG289100
rosa_wichuraiana Rw5G025970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 210
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 2 cut(s) 119, 213
AcuI CTGAAG 2 cut(s) 34, 212
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 2 cut(s) 190, 320
AluI AGCT 2 cut(s) 190, 320
AlwI GGATC 1 cut(s) 33
AoxI GGCC 3 cut(s) 119, 213, 335
ApeKI GCWGC 2 cut(s) 112, 304
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 57
AvaII GGWCC 1 cut(s) 54
BalI TGGCCA 2 cut(s) 121, 215
BbsI GAAGAC 1 cut(s) 239
BbvI GCAGC 2 cut(s) 124, 316
BccI CCATC 4 cut(s) 18, 79, 157, 236
BciT130I CCWGG 1 cut(s) 123
BcnI CCSGG 1 cut(s) 315
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 149
BisI GCNGC 2 cut(s) 113, 305
BlsI GCNGC 2 cut(s) 114, 306
Bme1390I CCNGG 2 cut(s) 123, 315
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmrFI CCNGG 2 cut(s) 123, 315
BpiI GAAGAC 1 cut(s) 239
BpuEI CTTGAG 1 cut(s) 19
BpuMI CCSGG 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 3 cut(s) 116, 122, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 116, 122, 328
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 2 cut(s) 197, 266
BseXI GCAGC 2 cut(s) 124, 316
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 3 cut(s) 121, 215, 337
BsiSI CCGG 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 122
BsnI GGCC 3 cut(s) 121, 215, 337
Bsp143I GATC 2 cut(s) 38, 135
Bsp19I CCATGG 1 cut(s) 116
BspANI GGCC 3 cut(s) 121, 215, 337
BspFNI CGCG 1 cut(s) 210
BspPI GGATC 1 cut(s) 33
BspQI GCTCTTC 1 cut(s) 53
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 3 cut(s) 116, 122, 328
BssMI GATC 2 cut(s) 38, 135
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 262, 329
Bst6I CTCTTC 2 cut(s) 53, 156
BstACI GRCGYC 1 cut(s) 270
BstDSI CCRYGG 2 cut(s) 116, 328
BstF5I GGATG 1 cut(s) 29
BstFNI CGCG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 2 cut(s) 41, 138
BstMBI GATC 2 cut(s) 38, 135
BstMWI GCNNNNNNNGC 2 cut(s) 118, 127
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 2 cut(s) 121, 313
BstSFI CTRYAG 1 cut(s) 261
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 124, 316
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 3 cut(s) 121, 215, 337
BtgI CCRYGG 2 cut(s) 116, 328
BtsCI GGATG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 113
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 54
CseI GACGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 298
CviAII CATG 2 cut(s) 117, 247
CviJI RGCY 9 cut(s) 9, 115, 121, 190, 200, 215, 257, 320, 337
CviKI_1 RGCY 9 cut(s) 9, 115, 121, 190, 200, 215, 257, 320, 337
CviQI GTAC 1 cut(s) 298
DpnI GATC 2 cut(s) 40, 137
DpnII GATC 2 cut(s) 38, 135
EaeI YGGCCR 2 cut(s) 119, 213
Eam1104I CTCTTC 2 cut(s) 53, 156
EarI CTCTTC 2 cut(s) 53, 156
Eco130I CCWWGG 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 54
Eco57I CTGAAG 2 cut(s) 34, 212
EcoO109I RGGNCCY 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 2 cut(s) 120, 250
FaiI YATR 4 cut(s) 118, 240, 248, 309
FatI CATG 2 cut(s) 116, 246
Fnu4HI GCNGC 2 cut(s) 113, 305
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 2 cut(s) 113, 305
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 147
GluI GCNGC 2 cut(s) 113, 305
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 3 cut(s) 121, 215, 337
HapII CCGG 1 cut(s) 314
HgaI GACGC 1 cut(s) 278
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 2 cut(s) 120, 250
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HinfI GANTC 1 cut(s) 281
HpaII CCGG 1 cut(s) 314
HphI GGTGA 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 36, 169
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 108, 187
HpyCH4III ACNGT 2 cut(s) 262, 329
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 127
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 2 cut(s) 120, 250
HspAI GCGC 1 cut(s) 146
Kzo9I GATC 2 cut(s) 38, 135
LguI GCTCTTC 1 cut(s) 53
LmnI GCTCC 2 cut(s) 127, 317
LpnPI CCDG 6 cut(s) 37, 108, 116, 119, 135, 327
Lsp1109I GCAGC 2 cut(s) 124, 316
MaeI CTAG 1 cut(s) 141
MalI GATC 2 cut(s) 40, 137
MboI GATC 2 cut(s) 38, 135
MboII GAAGA 5 cut(s) 5, 8, 40, 173, 244
MflI RGATCY 1 cut(s) 38
MlsI TGGCCA 2 cut(s) 121, 215
MluCI AATT 1 cut(s) 276
MluI ACGCGT 1 cut(s) 208
MluNI TGGCCA 2 cut(s) 121, 215
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 6 cut(s) 32, 43, 175, 244, 247, 327
Mox20I TGGCCA 2 cut(s) 121, 215
MscI TGGCCA 2 cut(s) 121, 215
MseI TTAA 2 cut(s) 59, 349
MslI CAYNNNNRTG 1 cut(s) 88
Msp20I TGGCCA 2 cut(s) 121, 215
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 2 cut(s) 123, 315
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 118, 127
NciI CCSGG 1 cut(s) 315
NcoI CCATGG 1 cut(s) 116
NdeII GATC 2 cut(s) 38, 135
NlaIII CATG 2 cut(s) 120, 250
NmeAIII GCCGAG 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 53
PkrI GCNGC 2 cut(s) 114, 306
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PpuMI RGGWCCY 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspPI GGNCC 1 cut(s) 54
PspPPI RGGWCCY 1 cut(s) 54
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 88
SapI GCTCTTC 1 cut(s) 53
SaqAI TTAA 2 cut(s) 59, 349
SatI GCNGC 2 cut(s) 113, 305
Sau3AI GATC 2 cut(s) 38, 135
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 123, 315
SetI ASST 5 cut(s) 56, 192, 227, 299, 322
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 1 cut(s) 276
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 121, 313
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 2 cut(s) 262, 329
TaqI TCGA 1 cut(s) 152
TasI AATT 1 cut(s) 276
Tru1I TTAA 2 cut(s) 59, 349
Tru9I TTAA 2 cut(s) 59, 349
TscAI CASTG 1 cut(s) 113
TseI GCWGC 2 cut(s) 112, 304
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 54
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.