pycom03g14710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0016023
Physical Location & Seq
Reverse (-)
16018899 .. 16020083
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g14710.1

Sequence Viewer

Length: 480 bp
ATGTGGTGGGAAGACGCGTGTATTGGCATTTACCTCTGCATTATTGTCATTGCGTTTCTGACCTTCATCCATATATTGGCACTTCCTTTCCTTCTCTTTGTATTGCAATCTGGAAAATCAGTACATCAAAAGCTAGTTAGTGCGTTCGACTTCAAGATGGCAGGCCGTATTTTTACTCTCCACACCTTCCCATCAAGGTCAAGATCCACAGTTTTGAAGTCATTAGCAGCATGTCATTACACAACCAAGCAGAGATATAGCAGCCAAGGGAGCAAGGGAGAGCACCACCGCTACATAGATATAGAAGAGAGAGCATCTTCTACGGCTGAGGAGTTCAAGAGAATGGCCGAGGAGAAGCTGAAGGCGGCGGAGCAAGGTGTGGCCAGCCAGACAGTGGACAAGACATACGATGGGACAGGGGAAGCTACCGTGGGTGACTCTAACGTCGACTCTGTCAAGAATAGGTACAAGGATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.97

Weight (kDa)

8.75

Isoelectric Point (pI)

57.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55135
fragaria_vesca FvH4_3g23370
malus_domestica MD03G1195000.v1.1
prunus_persica Prupe.4G221600_v2.0.a1
pyrus_communis pycom03g14710
rosa_chinensis RchiOBHm_Chr5g0041161
rosa_laevigata RLG00000034032
rosa_multiflora Rmu_sc0007618.1_g000020
rosa_roxburghii Rroxscaffold_1G00039490
rosa_rugosa Rorug05G0190200
rosa_samantha Rh5AG276100 Rh5BG281000 Rh5CG313200 Rh5DG289100
rosa_wichuraiana Rw5G025970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 443
AccB7I CCANNNNNTGG 2 cut(s) 76, 394
AccI GTMKAC 1 cut(s) 447
AccII CGCG 1 cut(s) 17
AciI CCGC 3 cut(s) 289, 365, 368
AclWI GGATC 1 cut(s) 198
AcoI YGGCCR 2 cut(s) 345, 381
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 2 cut(s) 123, 467
AfiI CCNNNNNNNGG 2 cut(s) 76, 394
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 3 cut(s) 154, 217, 337
AluBI AGCT 3 cut(s) 133, 358, 425
AluI AGCT 3 cut(s) 133, 358, 425
Alw21I GWGCWC 1 cut(s) 285
AlwI GGATC 1 cut(s) 198
AoxI GGCC 3 cut(s) 163, 345, 381
ApeKI GCWGC 2 cut(s) 227, 261
AsuHPI GGTGA 1 cut(s) 446
BalI TGGCCA 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 285
BbvCI CCTCAGC 1 cut(s) 327
BbvI GCAGC 2 cut(s) 239, 273
BccI CCATC 3 cut(s) 151, 199, 404
BceAI ACGGC 2 cut(s) 150, 339
BfaI CTAG 1 cut(s) 134
BisI GCNGC 3 cut(s) 228, 262, 366
BlsI GCNGC 3 cut(s) 229, 263, 367
BmsI GCATC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 18
Bpu10I CCTNAGC 1 cut(s) 327
Bsa29I ATCGAT 1 cut(s) 475
BsaJI CCNNGG 3 cut(s) 265, 348, 429
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 394
Bse3DI GCAATG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 475
BseDI CCNNGG 3 cut(s) 265, 348, 429
BseGI GGATG 1 cut(s) 66
BseLI CCNNNNNNNGG 2 cut(s) 76, 394
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 318
BseRI GAGGAG 2 cut(s) 344, 365
BseXI GCAGC 2 cut(s) 239, 273
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 3 cut(s) 165, 347, 383
BshVI ATCGAT 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 285
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 2 cut(s) 76, 394
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 3 cut(s) 165, 347, 383
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 2 cut(s) 203, 472
BspACI CCGC 3 cut(s) 289, 365, 368
BspANI GGCC 3 cut(s) 165, 347, 383
BspCNI CTCAG 1 cut(s) 319
BspDI ATCGAT 1 cut(s) 475
BspFNI CGCG 1 cut(s) 17
BspPI GGATC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 48
BssECI CCNNGG 3 cut(s) 265, 348, 429
BssMI GATC 2 cut(s) 203, 472
BssT1I CCWWGG 1 cut(s) 265
Bst4CI ACNGT 3 cut(s) 211, 394, 430
Bst6I CTCTTC 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 163, 385
BstDEI CTNAG 1 cut(s) 327
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 1 cut(s) 66
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 2 cut(s) 206, 475
BstMBI GATC 2 cut(s) 203, 472
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNSI RCATGY 1 cut(s) 234
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 239, 273
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
Bsu15I ATCGAT 1 cut(s) 475
BsuRI GGCC 3 cut(s) 165, 347, 383
BsuTUI ATCGAT 1 cut(s) 475
BtgI CCRYGG 1 cut(s) 429
BtsCI GGATG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 2 cut(s) 163, 385
ClaI ATCGAT 1 cut(s) 475
CseI GACGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 122, 466
CviAII CATG 1 cut(s) 231
CviJI RGCY 9 cut(s) 133, 165, 264, 326, 347, 358, 383, 387, 425
CviKI_1 RGCY 9 cut(s) 133, 165, 264, 326, 347, 358, 383, 387, 425
CviQI GTAC 2 cut(s) 122, 466
DdeI CTNAG 1 cut(s) 327
DpnI GATC 2 cut(s) 205, 474
DpnII GATC 2 cut(s) 203, 472
DrdI GACNNNNNNGTC 1 cut(s) 443
DseDI GACNNNNNNGTC 1 cut(s) 443
EaeI YGGCCR 2 cut(s) 345, 381
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
EciI GGCGGA 1 cut(s) 383
Eco130I CCWWGG 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 380
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 1 cut(s) 234
FaiI YATR 7 cut(s) 72, 74, 232, 258, 296, 302, 406
FaqI GGGAC 1 cut(s) 427
FatI CATG 1 cut(s) 230
FblI GTMKAC 1 cut(s) 447
Fnu4HI GCNGC 3 cut(s) 228, 262, 366
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 228, 262, 366
FspBI CTAG 1 cut(s) 134
GluI GCNGC 3 cut(s) 228, 262, 366
HaeIII GGCC 3 cut(s) 165, 347, 383
HgaI GACGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 234
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 2 cut(s) 437, 449
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 2 cut(s) 397, 448
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 5 cut(s) 111, 154, 201, 337, 457
Hpy8I GTNNAC 2 cut(s) 397, 448
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 4 cut(s) 73, 101, 196, 355
HpyCH4III ACNGT 3 cut(s) 211, 394, 430
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 2 cut(s) 39, 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 1 cut(s) 234
Kzo9I GATC 2 cut(s) 203, 472
LmnI GCTCC 2 cut(s) 270, 370
LpnPI CCDG 5 cut(s) 96, 147, 397, 401, 402
Lsp1109I GCAGC 2 cut(s) 239, 273
LweI GCATC 1 cut(s) 323
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 434
MalI GATC 2 cut(s) 205, 474
MboI GATC 2 cut(s) 203, 472
MboII GAAGA 3 cut(s) 23, 309, 317
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 383
MluI ACGCGT 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 2 cut(s) 431, 443
MnlI CCTC 3 cut(s) 44, 322, 343
Mox20I TGGCCA 1 cut(s) 383
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 270
NdeII GATC 2 cut(s) 203, 472
NlaIII CATG 1 cut(s) 234
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 434
NspI RCATGY 1 cut(s) 234
PflFI GACNNNGTC 1 cut(s) 452
PflMI CCANNNNNTGG 2 cut(s) 76, 394
PkrI GCNGC 3 cut(s) 229, 263, 367
PleI GAGTC 2 cut(s) 431, 443
PpsI GAGTC 2 cut(s) 431, 443
PsuI RGATCY 1 cut(s) 203
PsyI GACNNNGTC 1 cut(s) 452
RsaI GTAC 2 cut(s) 123, 467
RsaNI GTAC 2 cut(s) 122, 466
SalI GTCGAC 1 cut(s) 446
SatI GCNGC 3 cut(s) 228, 262, 366
Sau3AI GATC 2 cut(s) 203, 472
SchI GAGTC 2 cut(s) 431, 443
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 1 cut(s) 323
SsiI CCGC 3 cut(s) 289, 365, 368
SspMI CTAG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 3 cut(s) 211, 394, 430
TaiI ACGT 1 cut(s) 447
TaqI TCGA 3 cut(s) 147, 447, 475
TatI WGTACW 1 cut(s) 121
TauI GCSGC 1 cut(s) 368
TscAI CASTG 1 cut(s) 399
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 2 cut(s) 227, 261
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 1 cut(s) 399
Tth111I GACNNNGTC 1 cut(s) 452
Van91I CCANNNNNTGG 2 cut(s) 76, 394
XceI RCATGY 1 cut(s) 234
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 447
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.