RLG00000034032

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016023
Physical Location & Seq
Forward (+)
35562325 .. 35562810
486 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034032

Sequence Viewer

Length: 366 bp
ATGAGAAGCCATCTTCTTCCCCTCTCATCATCCTCAAGATCCTTGCTTTTCAGGTCCTTAACATCACCGCCGTCGTCGTCGTCATCATGTAGGCCTCCTAACCAGTTTGGGCGATGTTATAGTGGCAGCCATGGCCAGGGGGAGCAGGAGATCACTAGAGCGCCATCGACAGCGGAAGAGTTCAAGAGAGTTGCAGAGGAGAAGCTGAAAGAAGCCGAGCAACGCGTGGCCAGTCATACCTTTGAGAAGACTTATGATGGCATGGAGGCGGCTACTGTAGGCGACGCCAAAATTGAGTCCGTCAAGGAAAGGTGCAAGCAGCATGAACCGGGGGCTGACTACAATAGGAGGCCAGATCATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.5

Weight (kDa)

6.97

Isoelectric Point (pI)

73.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55135
fragaria_vesca FvH4_3g23370
malus_domestica MD03G1195000.v1.1
prunus_persica Prupe.4G221600_v2.0.a1
pyrus_communis pycom03g14710
rosa_chinensis RchiOBHm_Chr5g0041161
rosa_laevigata RLG00000034032
rosa_multiflora Rmu_sc0007618.1_g000020
rosa_roxburghii Rroxscaffold_1G00039490
rosa_rugosa Rorug05G0190200
rosa_samantha Rh5AG276100 Rh5BG281000 Rh5CG313200 Rh5DG289100
rosa_wichuraiana Rw5G025970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 225
AciI CCGC 3 cut(s) 68, 173, 269
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 2 cut(s) 133, 228
AcyI GRCGYC 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 136
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
AlwI GGATC 1 cut(s) 33
AoxI GGCC 4 cut(s) 92, 133, 228, 350
ApeKI GCWGC 2 cut(s) 126, 319
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 1 cut(s) 57
AvaII GGWCC 1 cut(s) 54
BalI TGGCCA 2 cut(s) 135, 230
BbsI GAAGAC 1 cut(s) 254
BbvI GCAGC 2 cut(s) 138, 331
BccI CCATC 3 cut(s) 18, 172, 251
BceAI ACGGC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 137
BcnI CCSGG 1 cut(s) 330
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 164
BisI GCNGC 3 cut(s) 127, 270, 320
BlsI GCNGC 3 cut(s) 128, 271, 321
Bme1390I CCNGG 2 cut(s) 137, 330
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmrFI CCNGG 2 cut(s) 137, 330
BpiI GAAGAC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 19
BpuMI CCSGG 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 3 cut(s) 130, 136, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 2 cut(s) 103, 231
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 3 cut(s) 130, 136, 329
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 136
BseNI ACTGG 2 cut(s) 103, 231
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 2 cut(s) 138, 331
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 4 cut(s) 94, 135, 230, 352
BsiSI CCGG 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 136
BsnI GGCC 4 cut(s) 94, 135, 230, 352
Bsp143I GATC 3 cut(s) 38, 150, 355
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 3 cut(s) 68, 173, 269
BspANI GGCC 4 cut(s) 94, 135, 230, 352
BspFNI CGCG 1 cut(s) 225
BspHI TCATGA 1 cut(s) 358
BspPI GGATC 1 cut(s) 33
BsrI ACTGG 2 cut(s) 103, 231
BssECI CCNNGG 3 cut(s) 130, 136, 329
BssMI GATC 3 cut(s) 38, 150, 355
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 171
BstACI GRCGYC 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 317
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 29
BstFNI CGCG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 3 cut(s) 41, 153, 358
BstMBI GATC 3 cut(s) 38, 150, 355
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 135, 328
BstSFI CTRYAG 1 cut(s) 276
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 138, 331
BstV2I GAAGAC 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 4 cut(s) 94, 135, 230, 352
BtgI CCRYGG 1 cut(s) 130
BtgZI GCGATG 1 cut(s) 127
BtsCI GGATG 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 317
CciI TCATGA 1 cut(s) 358
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 54
CseI GACGC 1 cut(s) 293
CviAII CATG 5 cut(s) 87, 131, 262, 323, 359
DpnI GATC 3 cut(s) 40, 152, 357
DpnII GATC 3 cut(s) 38, 150, 355
EaeI YGGCCR 2 cut(s) 133, 228
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 5 cut(s) 90, 134, 265, 326, 362
FaiI YATR 8 cut(s) 88, 120, 132, 237, 255, 263, 324, 360
FatI CATG 5 cut(s) 86, 130, 261, 322, 358
Fnu4HI GCNGC 3 cut(s) 127, 270, 320
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 3 cut(s) 127, 270, 320
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 162
GluI GCNGC 3 cut(s) 127, 270, 320
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 4 cut(s) 94, 135, 230, 352
HapII CCGG 1 cut(s) 329
HgaI GACGC 1 cut(s) 293
HhaI GCGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 5 cut(s) 90, 134, 265, 326, 362
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HinfI GANTC 1 cut(s) 296
HpaII CCGG 1 cut(s) 329
HphI GGTGA 1 cut(s) 57
Hpy188III TCNNGA 3 cut(s) 36, 184, 359
Hpy99I CGWCG 4 cut(s) 76, 79, 82, 287
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 194, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 5 cut(s) 90, 134, 265, 326, 362
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 3 cut(s) 38, 150, 355
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 7 cut(s) 37, 116, 122, 131, 149, 244, 342
Lsp1109I GCAGC 2 cut(s) 138, 331
MaeI CTAG 1 cut(s) 156
MalI GATC 3 cut(s) 40, 152, 357
MboI GATC 3 cut(s) 38, 150, 355
MboII GAAGA 4 cut(s) 5, 8, 188, 259
MflI RGATCY 1 cut(s) 38
MlsI TGGCCA 2 cut(s) 135, 230
MluCI AATT 1 cut(s) 291
MluI ACGCGT 1 cut(s) 223
MluNI TGGCCA 2 cut(s) 135, 230
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 6 cut(s) 32, 43, 105, 190, 259, 342
Mox20I TGGCCA 2 cut(s) 135, 230
MscI TGGCCA 2 cut(s) 135, 230
MseI TTAA 2 cut(s) 59, 364
Msp20I TGGCCA 2 cut(s) 135, 230
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 2 cut(s) 137, 330
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 1 cut(s) 330
NcoI CCATGG 1 cut(s) 130
NdeII GATC 3 cut(s) 38, 150, 355
NlaIII CATG 5 cut(s) 90, 134, 265, 326, 362
NmeAIII GCCGAG 1 cut(s) 241
PagI TCATGA 1 cut(s) 358
PceI AGGCCT 1 cut(s) 94
PkrI GCNGC 3 cut(s) 128, 271, 321
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PpuMI RGGWCCY 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspPI GGNCC 1 cut(s) 54
PspPPI RGGWCCY 1 cut(s) 54
PsuI RGATCY 1 cut(s) 38
SaqAI TTAA 2 cut(s) 59, 364
SatI GCNGC 3 cut(s) 127, 270, 320
Sau3AI GATC 3 cut(s) 38, 150, 355
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 2 cut(s) 137, 330
SetI ASST 4 cut(s) 56, 207, 242, 314
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 1 cut(s) 291
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 3 cut(s) 68, 173, 269
SspMI CTAG 1 cut(s) 156
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 2 cut(s) 135, 328
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 167
TasI AATT 1 cut(s) 291
TauI GCSGC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 59, 364
Tru9I TTAA 2 cut(s) 59, 364
TseI GCWGC 2 cut(s) 126, 319
TspDTI ATGAA 1 cut(s) 339
TspGWI ACGGA 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 54
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.