Rorug05G0190200

Small ubiquitin-related modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004029
Physical Location & Seq
Forward (+)
18519196 .. 18521694
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0190200.1

Sequence Viewer

Length: 429 bp
ATGGAAAACGGAGGCAACCACGGCGGCGAGTCGTCGTACCCAAATGCCGACCAGACTGAGACTGAGATTCAGAAGAAGACAACATTGGAATCGGAGTCTTTGGCAAAGGGACTGTCTTCCACCCTCGCCACCATCATTAAAGACTTCGATTCCAAAGCTCAGCAAACCTTCACCAGCCAAGACCAGCTCTCTCAAGCCCTCGATCGCCTCACCCGCGAGCTTGATAAGTTGTTAGAGGATGCTCCGTTGCCGTTCATAATGCAACACGCGGCGAAGATAACGGCGGTTAGGAAGAGGGTTTTGTCTCTCAACTCCGTTTTGAAGAATGTTCAACGCCGTCTTGATAATATAGACCGCATCTTAACTCTGGGCGCCCCACATCAAAACCAACATGATAAGACATCCACCGAACATTCAGGGCTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

142

Amino Acids

15.77

Weight (kDa)

6.19

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snapin_Pallidin PF14712 33 - 117 5.5e-22 Snapin/Pallidin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 371
AccII CGCG 2 cut(s) 216, 269
AciI CCGC 5 cut(s) 24, 214, 269, 284, 355
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 2 cut(s) 322, 332
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 3 cut(s) 158, 187, 220
AluI AGCT 3 cut(s) 158, 187, 220
Alw26I GTCTC 2 cut(s) 53, 309
ApeKI GCWGC 1 cut(s) 421
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AspLEI GCGC 1 cut(s) 374
AsuHPI GGTGA 2 cut(s) 163, 202
BanI GGYRCC 1 cut(s) 371
BbsI GAAGAC 2 cut(s) 83, 108
BbvI GCAGC 1 cut(s) 408
BccI CCATC 1 cut(s) 140
BceAI ACGGC 4 cut(s) 37, 235, 297, 321
BcoDI GTCTC 2 cut(s) 53, 309
BfmI CTRYAG 1 cut(s) 422
BfoI RGCGCY 1 cut(s) 375
BisI GCNGC 3 cut(s) 25, 270, 422
BlpI GCTNAGC 1 cut(s) 159
BlsI GCNGC 3 cut(s) 26, 271, 423
BmiI GGNNCC 1 cut(s) 373
BmsI GCATC 2 cut(s) 229, 366
BpiI GAAGAC 2 cut(s) 83, 108
Bpu1102I GCTNAGC 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 2 cut(s) 244, 401
BseMII CTCAG 3 cut(s) 48, 54, 173
BseXI GCAGC 1 cut(s) 408
Bsh1236I CGCG 2 cut(s) 216, 269
Bsh1285I CGRYCG 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 371
BsiEI CGRYCG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 123
BsmAI GTCTC 2 cut(s) 53, 309
BsmFI GGGAC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 202
Bsp1720I GCTNAGC 1 cut(s) 159
BspACI CCGC 5 cut(s) 24, 214, 269, 284, 355
BspCNI CTCAG 3 cut(s) 49, 55, 172
BspFNI CGCG 2 cut(s) 216, 269
BspLI GGNNCC 1 cut(s) 373
BspMAI CTGCAG 1 cut(s) 426
BspT107I GGYRCC 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 1 cut(s) 202
BssNI GRCGYC 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 3 cut(s) 57, 63, 159
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 2 cut(s) 244, 401
BstFNI CGCG 2 cut(s) 216, 269
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 2 cut(s) 53, 309
BstMBI GATC 1 cut(s) 202
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 21, 213
BstSFI CTRYAG 1 cut(s) 422
BstUI CGCG 2 cut(s) 216, 269
BstV1I GCAGC 1 cut(s) 408
BstV2I GAAGAC 2 cut(s) 83, 108
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 2 cut(s) 244, 401
Cac8I GCNNGC 1 cut(s) 218
CfoI GCGC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 37
CviAII CATG 1 cut(s) 392
CviJI RGCY 6 cut(s) 158, 177, 187, 197, 220, 421
CviKI_1 RGCY 6 cut(s) 158, 177, 187, 197, 220, 421
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 3 cut(s) 57, 63, 159
DinI GGCGCC 1 cut(s) 373
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
EgeI GGCGCC 1 cut(s) 373
EheI GGCGCC 1 cut(s) 373
FaeI CATG 1 cut(s) 395
FaiI YATR 3 cut(s) 257, 350, 393
FaqI GGGAC 1 cut(s) 123
FatI CATG 1 cut(s) 391
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 3 cut(s) 25, 270, 422
FokI GGATG 2 cut(s) 251, 388
Fsp4HI GCNGC 3 cut(s) 25, 270, 422
GlaI GCGC 1 cut(s) 373
GluI GCNGC 3 cut(s) 25, 270, 422
HaeII RGCGCY 1 cut(s) 375
HhaI GCGC 1 cut(s) 374
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 1 cut(s) 395
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HinfI GANTC 5 cut(s) 29, 67, 89, 95, 149
HphI GGTGA 2 cut(s) 163, 202
Hpy188I TCNGA 2 cut(s) 72, 94
Hpy188III TCNNGA 1 cut(s) 341
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 262, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 213
HpyF3I CTNAG 3 cut(s) 57, 63, 159
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 1 cut(s) 395
HspAI GCGC 1 cut(s) 372
KasI GGCGCC 1 cut(s) 371
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 5 cut(s) 65, 187, 197, 353, 402
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 2 cut(s) 229, 366
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 6 cut(s) 85, 88, 108, 286, 304, 334
Mly113I GGCGCC 1 cut(s) 372
MlyI GAGTC 2 cut(s) 38, 104
MnlI CCTC 6 cut(s) 5, 134, 209, 218, 229, 288
MseI TTAA 2 cut(s) 138, 362
MvnI CGCG 2 cut(s) 216, 269
MwoI GCNNNNNNNGC 2 cut(s) 21, 213
NarI GGCGCC 1 cut(s) 372
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 395
NlaIV GGNNCC 1 cut(s) 373
PfeI GAWTC 3 cut(s) 67, 89, 149
PkrI GCNGC 3 cut(s) 26, 271, 423
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 2 cut(s) 37, 103
PluTI GGCGCC 1 cut(s) 375
PpsI GAGTC 2 cut(s) 37, 103
PspN4I GGNNCC 1 cut(s) 373
PstI CTGCAG 1 cut(s) 426
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SaqAI TTAA 2 cut(s) 138, 362
SatI GCNGC 3 cut(s) 25, 270, 422
Sau3AI GATC 1 cut(s) 202
SchI GAGTC 2 cut(s) 38, 104
SetI ASST 4 cut(s) 160, 170, 189, 222
SfaNI GCATC 2 cut(s) 229, 366
SfcI CTRYAG 1 cut(s) 422
SfoI GGCGCC 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
SsiI CCGC 5 cut(s) 24, 214, 269, 284, 355
SspDI GGCGCC 1 cut(s) 371
TaaI ACNGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 147, 201
TauI GCSGC 2 cut(s) 27, 272
TfiI GAWTC 3 cut(s) 67, 89, 149
Tru1I TTAA 2 cut(s) 138, 362
Tru9I TTAA 2 cut(s) 138, 362
TseI GCWGC 1 cut(s) 421
TspDTI ATGAA 1 cut(s) 244
TspGWI ACGGA 3 cut(s) 24, 234, 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.