FvH4_6g42200

Small ubiquitin-related modifier

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
32985948 .. 32987364
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42200.t1

Sequence Viewer

Length: 306 bp
ATGTCAGGAGTTGCGAGCCAGCCACAGGAGGAGGACAAGAAGCCCAATGATCAGGGTGCTCACATCAACCTCAAAGTGAAAGGCCAGGATGGGAATGAAGTGTTCTTCAGGATCAAAAGAAGCACTCAACTCAAGAAGCTGATGAATGCCTACTGTGATCGCCAATCTGTGGAGCTCAACTCAATTGCCTTCCTGTTTGATGGCCGTCGTCTGCGAGCAGAGCAGACCCCTGATGAGCTTGAAATGGAAGATGGGGATGAGATTGATGCTATGTTGCACCAGACTGGAGGAGCTGCACAGCTTTGA

Protein Analysis

102

Amino Acids

11.35

Weight (kDa)

4.95

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 22 - 92 1.4e-25 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 24 - 94 1.8e-16 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 169
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 91
AfiI CCNNNNNNNGG 2 cut(s) 25, 169
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 5 cut(s) 139, 175, 238, 293, 301
AluI AGCT 5 cut(s) 139, 175, 238, 293, 301
Alw21I GWGCWC 2 cut(s) 61, 177
AlwI GGATC 1 cut(s) 119
AoxI GGCC 2 cut(s) 82, 202
ApeKI GCWGC 1 cut(s) 293
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 2 cut(s) 61, 177
BbvI GCAGC 1 cut(s) 280
BccI CCATC 3 cut(s) 83, 194, 245
BceAI ACGGC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 86
BclI TGATCA 1 cut(s) 49
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 256
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpmI CTGGAG 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 169
Bse1I ACTGG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 86
BseGI GGATG 2 cut(s) 94, 262
BseLI CCNNNNNNNGG 2 cut(s) 25, 169
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 2 cut(s) 44, 303
BseXI GCAGC 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 279
BshFI GGCC 2 cut(s) 84, 204
BsiHKAI GWGCWC 2 cut(s) 61, 177
BslI CCNNNNNNNGG 2 cut(s) 25, 169
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 2 cut(s) 84, 204
Bsp1286I GDGCHC 2 cut(s) 61, 177
Bsp143I GATC 3 cut(s) 49, 111, 157
BspANI GGCC 2 cut(s) 84, 204
BspPI GGATC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 289
BssMI GATC 3 cut(s) 49, 111, 157
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 16, 20, 216
BstF5I GGATG 2 cut(s) 94, 262
BstKTI GATC 3 cut(s) 52, 114, 160
BstMBI GATC 3 cut(s) 49, 111, 157
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 280
BsuRI GGCC 2 cut(s) 84, 204
BtsCI GGATG 2 cut(s) 94, 262
Cac8I GCNNGC 3 cut(s) 16, 20, 216
DpnI GATC 3 cut(s) 51, 113, 159
DpnII GATC 3 cut(s) 49, 111, 157
EaeI YGGCCR 1 cut(s) 202
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 177
FaiI YATR 1 cut(s) 272
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 2 cut(s) 101, 269
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 2 cut(s) 84, 204
Hpy188III TCNNGA 3 cut(s) 6, 109, 133
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 277, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 3 cut(s) 49, 111, 157
LmnI GCTCC 2 cut(s) 172, 290
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 256
MalI GATC 3 cut(s) 51, 113, 159
MboI GATC 3 cut(s) 49, 111, 157
MboII GAAGA 2 cut(s) 97, 260
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 2 cut(s) 61, 177
MluCI AATT 1 cut(s) 183
MnlI CCTC 4 cut(s) 22, 25, 80, 281
MspR9I CCNGG 1 cut(s) 86
MunI CAATTG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 3 cut(s) 49, 111, 157
PctI GAATGC 1 cut(s) 151
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 1 cut(s) 295
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
SacI GAGCTC 1 cut(s) 177
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 3 cut(s) 49, 111, 157
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 2 cut(s) 61, 177
SetI ASST 6 cut(s) 72, 141, 177, 240, 295, 303
SfaNI GCATC 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 1 cut(s) 183
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 155
TasI AATT 1 cut(s) 183
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 111, 158
Van91I CCANNNNNTGG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.