Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004029

Physical Location & Seq

Genomic Coordinates Reverse (-)

8641597 .. 8643369

Gene Structure 1773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1113800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTCGACTCCGCAGCAAGAAGAGGACAAGAAGCCCAACGACCAGGCCGCCCACATCAACCTCAAAGTCAAAGGACAGGATGGGAATGAAGTGTTTTTTAGGATCAAGCGAAGCACTCAGCTGAAGAAGCTTATGAATGCATATTGTGATCGCCAATCTGTGGAGATGAACTCAATTGCCTTCTTGTTTGATGGCCGTCGTCTGCGAGCAGAGCAGACCCCTGATGAGTTGGAAATGGAGGACGGTGATGAGATCGATGCAATGTTGCACCAAACTGGAGGAGCCGTACAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009987 GO:0010286 GO:0010468 GO:0010556 GO:0016925 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

99

Amino Acids

11.2

Weight (kDa)

4.95

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	19 - 89	3.3e-26	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	21 - 91	3e-17	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55160 AT5G55160
fragaria_vesca	FvH4_3g23390 FvH4_3g23390 FvH4_6g42200
malus_domestica	MD03G1194700.v1.1 MD09G1113800.v1.1 MD11G1211000.v1.1 MD17G1103900.v1.1
prunus_persica	Prupe.3G210800_v2.0.a1 Prupe.4G221800_v2.0.a1
pyrus_communis	pycom03g14680 pycom09g03780 pycom17g09800
rosa_chinensis	RchiOBHm_Chr2g0158121 RchiOBHm_Chr5g0041181
rosa_laevigata	RLG00000021061
rosa_multiflora	Rmu_sc0005982.1_g000009 Rmu_sc0007618.1_g000017 Rmu_sc0032555.1_g000001 Rmu_sc0037123.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039460 Rroxscaffold_2G00091650
rosa_rugosa	Rorug05G0190200
rosa_samantha	Rh2AG532200 Rh2BG546300 Rh2CG516100 Rh2DG554800 Rh5AG276300 Rh5CG313300 Rh5DG289300
rosa_wichuraiana	Rw2G044000 Rw5G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	11, 48
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	2 cut(s)	121, 130
AluI	AGCT	2 cut(s)	121, 130
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	2 cut(s)	45, 193
ApeKI	GCWGC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	74, 185
BceAI	ACGGC	2 cut(s)	180, 269
BciT130I	CCWGG	1 cut(s)	44
BisI	GCNGC	2 cut(s)	14, 48
BlsI	GCNGC	2 cut(s)	15, 49
Bme1390I	CCNGG	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	1 cut(s)	297
Bsa29I	ATCGAT	1 cut(s)	255
BsaXI	ACNNNNNCTCC	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	255
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	2 cut(s)	47, 195
BshVI	ATCGAT	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	47, 195
Bsp143I	GATC	3 cut(s)	102, 148, 252
BspACI	CCGC	2 cut(s)	11, 48
BspANI	GGCC	2 cut(s)	47, 195
BspCNI	CTCAG	1 cut(s)	130
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	280
BssMI	GATC	3 cut(s)	102, 148, 252
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	3 cut(s)	105, 151, 255
BstMBI	GATC	3 cut(s)	102, 148, 252
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 211
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	47, 195
BsuTUI	ATCGAT	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	287
CviJI	RGCY	6 cut(s)	34, 47, 121, 130, 195, 284
CviKI_1	RGCY	6 cut(s)	34, 47, 121, 130, 195, 284
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	3 cut(s)	104, 150, 254
DpnII	GATC	3 cut(s)	102, 148, 252
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	42
EcoT22I	ATGCAT	1 cut(s)	142
FaiI	YATR	2 cut(s)	134, 142
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	14, 48
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	14, 48
GluI	GCNGC	2 cut(s)	14, 48
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	47, 195
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	6
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	3 cut(s)	140, 260, 268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 211
HpyF3I	CTNAG	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	102, 148, 252
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	5 cut(s)	29, 56, 62, 234, 261
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	247
MalI	GATC	3 cut(s)	104, 150, 254
MboI	GATC	3 cut(s)	102, 148, 252
MboII	GAAGA	2 cut(s)	32, 136
MfeI	CAATTG	1 cut(s)	174
MluCI	AATT	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	4 cut(s)	16, 71, 232, 272
Mph1103I	ATGCAT	1 cut(s)	142
MspA1I	CMGCKG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	44
MunI	CAATTG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	127, 211
NdeII	GATC	3 cut(s)	102, 148, 252
NlaIV	GGNNCC	1 cut(s)	283
NsiI	ATGCAT	1 cut(s)	142
PctI	GAATGC	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	15, 49
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	121
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	14, 48
Sau3AI	GATC	3 cut(s)	102, 148, 252
ScrFI	CCNGG	1 cut(s)	44
SetI	ASST	3 cut(s)	63, 123, 132
SfaNI	GCATC	1 cut(s)	247
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	2 cut(s)	11, 48
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	5, 255
TasI	AATT	1 cut(s)	174
TauI	GCSGC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	102, 149, 182
Van91I	CCANNNNNTGG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.