pycom03g14680

Small ubiquitin-related modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0004029
Physical Location & Seq
Forward (+)
15997827 .. 15998757
931 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g14680.2

Sequence Viewer

Length: 297 bp
ATGTCAGGCGTCACGAACCAGGAGGAGGACAAGAAGCCCACCGATCAGGCTGCCCACATCAACCTCAAAGTCAAGGGCCAGGATGGGAATGAAGTGTTTTTCAGGATCAAGAGAAGTACCCAGCTGAAGAAGCTTATGAATGCTTACTGCGACAGACAGTCGGTGGAGTTCAACTCTATTGCATTCCTGTTTGATGGCCGTCGTCTCAGAGCCGAGCAGACCCCTGATGAGTTGGAAATGGAAGATGGGGATGAAATAGATGCAATGCTGCATCAAACTGGAGGTTCTTTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

99

Amino Acids

11.14

Weight (kDa)

4.95

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 146
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 1 cut(s) 172
AhdI GACNNNNNGTC 1 cut(s) 157
AjnI CCWGG 2 cut(s) 18, 78
AluBI AGCT 2 cut(s) 124, 133
AluI AGCT 2 cut(s) 124, 133
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 1 cut(s) 113
AoxI GGCC 2 cut(s) 76, 196
ApeKI GCWGC 2 cut(s) 50, 268
AspS9I GGNCC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 37, 255
BccI CCATC 3 cut(s) 77, 188, 239
BceAI ACGGC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BciT130I CCWGG 2 cut(s) 20, 80
BcoDI GTCTC 1 cut(s) 209
BisI GCNGC 2 cut(s) 51, 269
BlsI GCNGC 2 cut(s) 52, 270
Bme1390I CCNGG 2 cut(s) 20, 80
BmeRI GACNNNNNGTC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 20, 80
BmsI GCATC 2 cut(s) 250, 280
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BsaHI GRCGYC 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 2 cut(s) 20, 80
BseGI GGATG 2 cut(s) 88, 256
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 37, 255
BseYI CCCAGC 1 cut(s) 120
BshFI GGCC 2 cut(s) 78, 198
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 209
BsmBI CGTCTC 1 cut(s) 209
BsmI GAATGC 2 cut(s) 145, 182
BsnI GGCC 2 cut(s) 78, 198
Bsp143I GATC 2 cut(s) 43, 105
BspANI GGCC 2 cut(s) 78, 198
BspCNI CTCAG 1 cut(s) 219
BspPI GGATC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 270
BsrI ACTGG 1 cut(s) 283
BssMI GATC 2 cut(s) 43, 105
BssNI GRCGYC 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 20, 80
Bst4CI ACNGT 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 2 cut(s) 88, 256
BstKTI GATC 2 cut(s) 46, 108
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 2 cut(s) 43, 105
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 2 cut(s) 20, 80
BstSCI CCNGG 2 cut(s) 18, 78
BstV1I GCAGC 2 cut(s) 37, 255
BsuRI GGCC 2 cut(s) 78, 198
BtsCI GGATG 2 cut(s) 88, 256
Cfr13I GGNCC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 117
CviJI RGCY 7 cut(s) 37, 50, 78, 124, 133, 198, 212
CviKI_1 RGCY 7 cut(s) 37, 50, 78, 124, 133, 198, 212
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 1 cut(s) 206
DpnI GATC 2 cut(s) 45, 107
DpnII GATC 2 cut(s) 43, 105
DriI GACNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 196
Eam1105I GACNNNNNGTC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 18, 78
Esp3I CGTCTC 1 cut(s) 209
FaiI YATR 1 cut(s) 137
Fnu4HI GCNGC 2 cut(s) 51, 269
FokI GGATG 2 cut(s) 95, 263
Fsp4HI GCNGC 2 cut(s) 51, 269
GluI GCNGC 2 cut(s) 51, 269
GsaI CCCAGC 1 cut(s) 124
HaeIII GGCC 2 cut(s) 78, 198
Hin1I GRCGYC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 3 cut(s) 13, 103, 109
Hpy99I CGWCG 1 cut(s) 204
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 3 cut(s) 182, 263, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 206
Hsp92I GRCGYC 1 cut(s) 9
Kzo9I GATC 2 cut(s) 43, 105
Lsp1109I GCAGC 2 cut(s) 37, 255
LweI GCATC 2 cut(s) 250, 280
MaeIII GTNAC 1 cut(s) 10
MalI GATC 2 cut(s) 45, 107
MboI GATC 2 cut(s) 43, 105
MboII GAAGA 2 cut(s) 139, 254
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 4 cut(s) 16, 19, 74, 275
MspA1I CMGCKG 1 cut(s) 124
MspR9I CCNGG 2 cut(s) 20, 80
Mva1269I GAATGC 2 cut(s) 145, 182
MvaI CCWGG 2 cut(s) 20, 80
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 2 cut(s) 43, 105
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 1 cut(s) 10
PctI GAATGC 2 cut(s) 145, 182
PkrI GCNGC 2 cut(s) 52, 270
Psp6I CCWGG 2 cut(s) 18, 78
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 2 cut(s) 18, 78
PspPI GGNCC 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SatI GCNGC 2 cut(s) 51, 269
Sau3AI GATC 2 cut(s) 43, 105
Sau96I GGNCC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 20, 80
SetI ASST 4 cut(s) 66, 126, 135, 286
SfaNI GCATC 2 cut(s) 250, 280
StyD4I CCNGG 2 cut(s) 18, 78
TaaI ACNGT 1 cut(s) 159
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 2 cut(s) 50, 268
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 3 cut(s) 105, 152, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.