AT5G55160

Small ubiquitin-related modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004029
Physical Location & Seq
Reverse (-)
22383472 .. 22384942
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55160.2

Sequence Viewer

Length: 312 bp
ATGTCTGCTACTCCGGAAGAAGACAAGAAGCCTGACCAAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGGATGGTAATGAAGTCTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAAAAACTGATGAATGCTTACTGTGACCGTCAGTCTGTGGATTTCAACTCAATTGCTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGCTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTGGTGGTGGTGCTAAAAATGGCCTGAAGCTCTTCTGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

103

Amino Acids

11.65

Weight (kDa)

5.35

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 34 - 100 4.6e-23 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 36 - 102 5.6e-14 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 13
AclWI GGATC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 2 cut(s) 163, 227
AhdI GACNNNNNGTC 1 cut(s) 148
AluBI AGCT 4 cut(s) 44, 115, 223, 298
AluI AGCT 4 cut(s) 44, 115, 223, 298
Alw21I GWGCWC 1 cut(s) 46
AlwI GGATC 1 cut(s) 104
Aor13HI TCCGGA 1 cut(s) 13
AoxI GGCC 1 cut(s) 289
Asp700I GAANNNNTTC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 46
BbsI GAAGAC 3 cut(s) 27, 79, 188
Bbv12I GWGCWC 1 cut(s) 46
BccI CCATC 3 cut(s) 68, 179, 230
BmeRI GACNNNNNGTC 1 cut(s) 148
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 3 cut(s) 27, 79, 188
BplI GAGNNNNNCTC 2 cut(s) 94, 126
BpmI CTGGAG 1 cut(s) 198
Bsa29I ATCGAT 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 261
BseAI TCCGGA 1 cut(s) 13
BseCI ATCGAT 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 274
BshFI GGCC 1 cut(s) 291
BshVI ATCGAT 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 46
Bsp13I TCCGGA 1 cut(s) 13
Bsp143I GATC 2 cut(s) 96, 246
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 1 cut(s) 124
BspDI ATCGAT 1 cut(s) 249
BspEI TCCGGA 1 cut(s) 13
BspPI GGATC 1 cut(s) 104
BspQI GCTCTTC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 2 cut(s) 96, 246
BssT1I CCWWGG 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 140, 146
Bst6I CTCTTC 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 111
BstENI CCTNNNNNAGG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 2 cut(s) 99, 249
BstMBI GATC 2 cut(s) 96, 246
BstV2I GAAGAC 3 cut(s) 27, 79, 188
Bsu15I ATCGAT 1 cut(s) 249
BsuRI GGCC 1 cut(s) 291
BsuTUI ATCGAT 1 cut(s) 249
BtsCI GGATG 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 249
CviJI RGCY 6 cut(s) 31, 44, 115, 223, 291, 298
CviKI_1 RGCY 6 cut(s) 31, 44, 115, 223, 291, 298
DdeI CTNAG 1 cut(s) 111
DpnI GATC 2 cut(s) 98, 248
DpnII GATC 2 cut(s) 96, 246
DriI GACNNNNNGTC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 305
Eam1105I GACNNNNNGTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 305
Ecl136II GAGCTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 37
FaqI GGGAC 1 cut(s) 81
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 291
HapII CCGG 1 cut(s) 14
HinfI GANTC 1 cut(s) 211
HpaII CCGG 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 3 cut(s) 14, 100, 215
Hpy99I CGWCG 1 cut(s) 195
HpyCH4III ACNGT 2 cut(s) 140, 146
HpyCH4V TGCA 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 111
Kpn2I TCCGGA 1 cut(s) 13
Kzo9I GATC 2 cut(s) 96, 246
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 6 cut(s) 27, 45, 56, 228, 255, 305
LweI GCATC 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 140
MalI GATC 2 cut(s) 98, 248
MboI GATC 2 cut(s) 96, 246
MboII GAAGA 6 cut(s) 29, 32, 79, 188, 245, 292
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 1 cut(s) 168
MlyI GAGTC 1 cut(s) 205
MroI TCCGGA 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 299
MspI CCGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 136
NdeII GATC 2 cut(s) 96, 246
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PctI GAATGC 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 299
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 46
SacI GAGCTC 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 305
Sau3AI GATC 2 cut(s) 96, 246
SchI GAGTC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 46
SetI ASST 4 cut(s) 46, 117, 225, 300
SfaNI GCATC 1 cut(s) 241
Sse9I AATT 1 cut(s) 168
SstI GAGCTC 1 cut(s) 46
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 2 cut(s) 140, 146
TaqI TCGA 1 cut(s) 249
TasI AATT 1 cut(s) 168
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 3 cut(s) 96, 143, 251
XagI CCTNNNNNAGG 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.