Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004029

Physical Location & Seq

Genomic Coordinates Reverse (-)

16432751 .. 16434912

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23390.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTCGGGTGTCACTAACCAGGAGGAGGACAAGAAGCCCGCCGACCAGGCCGCTCACATCAACCTCAAAGTCAAGAGCCAGGATGGGAATGAGGTGTTCTTCCGGATCAAGCGAAACACTCAGTTGAAGAAGCTTATGAATGCTTACTGTGATCGCCAGTCAGTGGACTTCAACGCCATTGCATTCTTGTTTGATGGACGCCGTCTCAGGGCTGAGCAGACTCCAGATGAGTTGGAGATGGAGGATGGGGATGAGATAGATGCCATGCTGCACCAAACTGGAGGTGCTATTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

99

Amino Acids

11.11

Weight (kDa)

4.93

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	20 - 90	2.3e-26	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	22 - 92	1.4e-15	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55160 AT5G55160
fragaria_vesca	FvH4_3g23390 FvH4_3g23390 FvH4_6g42200
malus_domestica	MD03G1194700.v1.1 MD09G1113800.v1.1 MD11G1211000.v1.1 MD17G1103900.v1.1
prunus_persica	Prupe.3G210800_v2.0.a1 Prupe.4G221800_v2.0.a1
pyrus_communis	pycom03g14680 pycom09g03780 pycom17g09800
rosa_chinensis	RchiOBHm_Chr2g0158121 RchiOBHm_Chr5g0041181
rosa_laevigata	RLG00000021061
rosa_multiflora	Rmu_sc0005982.1_g000009 Rmu_sc0007618.1_g000017 Rmu_sc0032555.1_g000001 Rmu_sc0037123.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039460 Rroxscaffold_2G00091650
rosa_rugosa	Rorug05G0190200
rosa_samantha	Rh2AG532200 Rh2BG546300 Rh2CG516100 Rh2DG554800 Rh5AG276300 Rh5CG313300 Rh5DG289300
rosa_wichuraiana	Rw2G044000 Rw5G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccBSI	CCGCTC	1 cut(s)	53
AccIII	TCCGGA	1 cut(s)	102
AciI	CCGC	2 cut(s)	39, 51
AclWI	GGATC	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	199
AfiI	CCNNNNNNNGG	3 cut(s)	25, 163, 208
AgsI	TTSAA	2 cut(s)	127, 172
AjnI	CCWGG	3 cut(s)	18, 45, 78
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	113
Aor13HI	TCCGGA	1 cut(s)	102
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	4 cut(s)	77, 188, 232, 239
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	3 cut(s)	20, 47, 80
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	295
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	2 cut(s)	51, 269
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	2 cut(s)	52, 270
Bme1390I	CCNGG	3 cut(s)	20, 47, 80
BmrFI	CCNGG	3 cut(s)	20, 47, 80
BmsI	GCATC	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	199
BsaWI	WCCGGW	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 163, 208
Bse1I	ACTGG	2 cut(s)	157, 283
Bse3DI	GCAATG	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	102
BseBI	CCWGG	3 cut(s)	20, 47, 80
BseGI	GGATG	3 cut(s)	88, 250, 256
BseLI	CCNNNNNNNGG	3 cut(s)	25, 163, 208
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	3 cut(s)	134, 204, 220
BseNI	ACTGG	2 cut(s)	157, 283
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	255
BsgI	GTGCAG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	3 cut(s)	25, 163, 208
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsmI	GAATGC	2 cut(s)	145, 182
BsnI	GGCC	1 cut(s)	50
Bsp13I	TCCGGA	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	105, 151
Bsp1720I	GCTNAGC	1 cut(s)	213
BspACI	CCGC	2 cut(s)	39, 51
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	3 cut(s)	133, 205, 219
BspEI	TCCGGA	1 cut(s)	102
BspPI	GGATC	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	157, 283
BssMI	GATC	2 cut(s)	105, 151
BssNI	GRCGYC	1 cut(s)	199
Bst2UI	CCWGG	3 cut(s)	20, 47, 80
Bst4CI	ACNGT	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	120, 206, 213
BstF5I	GGATG	3 cut(s)	88, 250, 256
BstKTI	GATC	2 cut(s)	108, 154
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	2 cut(s)	105, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	3 cut(s)	20, 47, 80
BstSCI	CCNGG	3 cut(s)	18, 45, 78
BstV1I	GCAGC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	3 cut(s)	88, 250, 256
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	39
CseI	GACGC	1 cut(s)	207
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	5 cut(s)	37, 50, 78, 133, 212
CviKI_1	RGCY	5 cut(s)	37, 50, 78, 133, 212
DdeI	CTNAG	3 cut(s)	120, 206, 213
DpnI	GATC	2 cut(s)	107, 153
DpnII	GATC	2 cut(s)	105, 151
EcoRII	CCWGG	3 cut(s)	18, 45, 78
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	1 cut(s)	268
FaiI	YATR	2 cut(s)	137, 266
FatI	CATG	1 cut(s)	264
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	51, 269
FokI	GGATG	3 cut(s)	95, 257, 263
Fsp4HI	GCNGC	2 cut(s)	51, 269
FspBI	CTAG	1 cut(s)	295
GluI	GCNGC	2 cut(s)	51, 269
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188III	TCNNGA	3 cut(s)	73, 103, 224
Hpy8I	GTNNAC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	2 cut(s)	182, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	3 cut(s)	120, 206, 213
Hsp92I	GRCGYC	1 cut(s)	199
Hsp92II	CATG	1 cut(s)	268
Kpn2I	TCCGGA	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	105, 151
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	107, 153
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	2 cut(s)	105, 151
MboII	GAAGA	2 cut(s)	91, 139
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	6 cut(s)	16, 19, 74, 85, 235, 275
MroI	TCCGGA	1 cut(s)	102
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	3 cut(s)	20, 47, 80
Mva1269I	GAATGC	2 cut(s)	145, 182
MvaI	CCWGG	3 cut(s)	20, 47, 80
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	2 cut(s)	105, 151
NlaIII	CATG	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	10
PctI	GAATGC	2 cut(s)	145, 182
PflFI	GACNNNGTC	1 cut(s)	201
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	52, 270
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp6I	CCWGG	3 cut(s)	18, 45, 78
PspGI	CCWGG	3 cut(s)	18, 45, 78
PsyI	GACNNNGTC	1 cut(s)	201
SatI	GCNGC	2 cut(s)	51, 269
Sau3AI	GATC	2 cut(s)	105, 151
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	3 cut(s)	20, 47, 80
SetI	ASST	4 cut(s)	66, 96, 135, 286
SfaNI	GCATC	1 cut(s)	250
SsiI	CCGC	2 cut(s)	39, 51
SspMI	CTAG	1 cut(s)	295
StyD4I	CCNGG	3 cut(s)	18, 45, 78
TaaI	ACNGT	1 cut(s)	149
TauI	GCSGC	1 cut(s)	53
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	168
Tth111I	GACNNNGTC	1 cut(s)	201
Van91I	CCANNNNNTGG	1 cut(s)	163
XspI	CTAG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.