Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004029

Physical Location & Seq

Genomic Coordinates Forward (+)

21592977 .. 21594671

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G210800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTCGACTCCGCAGCAAGAAGAGGACAAGAAGCCCAACGATCAAGCTGCCCACATCAACCTCAAAGTGAAAGGCCAGGATGGGAATGAAGTGTTTTTCAGGATCAAACGAAGCACTCAACTGAAGAAGCTTATGAACGCATATTGTGATCGCCAGTCTGTGGAGCTGAATTCAATTGCCTTCTTGTTTGATGGTCGCCGTCTACGAGCAGAGCAGACGCCTGATGAGCTGGAAATGGAGGATGGTGATGAGATTGATGCAATGCTTCATCAAACTGGAGGAGCCGTACAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009987 GO:0010286 GO:0010468 GO:0010556 GO:0016925 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

99

Amino Acids

11.18

Weight (kDa)

4.95

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55160 AT5G55160
fragaria_vesca	FvH4_3g23390 FvH4_3g23390 FvH4_6g42200
malus_domestica	MD03G1194700.v1.1 MD09G1113800.v1.1 MD11G1211000.v1.1 MD17G1103900.v1.1
prunus_persica	Prupe.3G210800_v2.0.a1 Prupe.4G221800_v2.0.a1
pyrus_communis	pycom03g14680 pycom09g03780 pycom17g09800
rosa_chinensis	RchiOBHm_Chr2g0158121 RchiOBHm_Chr5g0041181
rosa_laevigata	RLG00000021061
rosa_multiflora	Rmu_sc0005982.1_g000009 Rmu_sc0007618.1_g000017 Rmu_sc0032555.1_g000001 Rmu_sc0037123.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039460 Rroxscaffold_2G00091650
rosa_rugosa	Rorug05G0190200
rosa_samantha	Rh2AG532200 Rh2BG546300 Rh2CG516100 Rh2DG554800 Rh5AG276300 Rh5CG313300 Rh5DG289300
rosa_wichuraiana	Rw2G044000 Rw5G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccI	GTMKAC	2 cut(s)	5, 202
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	4 cut(s)	47, 130, 166, 229
AluI	AGCT	4 cut(s)	47, 130, 166, 229
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	13, 47
ApoI	RAATTY	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	25, 34
BccI	CCATC	3 cut(s)	74, 185, 236
BceAI	ACGGC	2 cut(s)	183, 269
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BciT130I	CCWGG	1 cut(s)	77
BisI	GCNGC	2 cut(s)	14, 48
BlsI	GCNGC	2 cut(s)	15, 49
Bme1390I	CCNGG	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	218
BsaXI	ACNNNNNCTCC	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	154, 280
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	85, 247
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	154, 280
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	25, 34
BshFI	GGCC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	160
BsnI	GGCC	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	40, 102, 148
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	154, 280
BssMI	GATC	3 cut(s)	40, 102, 148
BssNI	GRCGYC	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	218
BstF5I	GGATG	2 cut(s)	85, 247
BstKTI	GATC	3 cut(s)	43, 105, 151
BstMBI	GATC	3 cut(s)	40, 102, 148
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	25, 34
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	85, 247
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	287
CviJI	RGCY	7 cut(s)	34, 47, 75, 130, 166, 229, 284
CviKI_1	RGCY	7 cut(s)	34, 47, 75, 130, 166, 229, 284
CviQI	GTAC	1 cut(s)	287
DpnI	GATC	3 cut(s)	42, 104, 150
DpnII	GATC	3 cut(s)	40, 102, 148
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	75
FaiI	YATR	2 cut(s)	134, 142
FblI	GTMKAC	2 cut(s)	5, 202
Fnu4HI	GCNGC	2 cut(s)	14, 48
FokI	GGATG	2 cut(s)	92, 254
Fsp4HI	GCNGC	2 cut(s)	14, 48
GluI	GCNGC	2 cut(s)	14, 48
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	75
HgaI	GACGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	6, 203
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	2 cut(s)	6, 203
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
Hsp92I	GRCGYC	1 cut(s)	218
Kzo9I	GATC	3 cut(s)	40, 102, 148
LmnI	GCTCC	2 cut(s)	163, 281
LpnPI	CCDG	7 cut(s)	62, 85, 89, 167, 215, 234, 261
Lsp1109I	GCAGC	2 cut(s)	25, 34
LweI	GCATC	1 cut(s)	247
MalI	GATC	3 cut(s)	42, 104, 150
MboI	GATC	3 cut(s)	40, 102, 148
MboII	GAAGA	2 cut(s)	32, 136
MfeI	CAATTG	1 cut(s)	174
MluCI	AATT	2 cut(s)	169, 174
MnlI	CCTC	4 cut(s)	16, 71, 232, 272
MspR9I	CCNGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	226
NdeII	GATC	3 cut(s)	40, 102, 148
NlaIV	GGNNCC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	15, 49
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	283
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	14, 48
Sau3AI	GATC	3 cut(s)	40, 102, 148
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	5 cut(s)	49, 63, 132, 168, 231
SfaNI	GCATC	1 cut(s)	247
Sse9I	AATT	2 cut(s)	169, 174
SsiI	CCGC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	75
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	169, 174
TseI	GCWGC	2 cut(s)	13, 47
TspDTI	ATGAA	3 cut(s)	102, 149, 257
Van91I	CCANNNNNTGG	1 cut(s)	160
XapI	RAATTY	1 cut(s)	169
XmiI	GTMKAC	2 cut(s)	5, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.