Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004029

Physical Location & Seq

Genomic Coordinates Reverse (-)

34548797 .. 34549529

Gene Structure 733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG313300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTCGGGTGTCACAAACCAGGAGGAGGACAAGAAGCCCGCCGACCAGGGCGCTCACATCAACCTCAAAGTCAAGAGCCAGGATGGGAATGAGGTGTTTTTCCGGATTAAGCGAAACACCCAATTGAAGAAGCTTATGAATGCTTACTGTGATCGGCAGTCGGTGGATTTCAACGCCATTGCATTCTTGTTCGATGGCCGTCGTCTCAGGGCCGAGCAGACTCCAGATGAGTTGGAGATGGAAGATGGGGATGAAATCGATGCGATGCTGCACCAAACTGGAGGCGCCCTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

98

Amino Acids

11.1

Weight (kDa)

4.93

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	20 - 90	2.3e-26	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	22 - 92	1.4e-15	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55160 AT5G55160
fragaria_vesca	FvH4_3g23390 FvH4_3g23390 FvH4_6g42200
malus_domestica	MD03G1194700.v1.1 MD09G1113800.v1.1 MD11G1211000.v1.1 MD17G1103900.v1.1
prunus_persica	Prupe.3G210800_v2.0.a1 Prupe.4G221800_v2.0.a1
pyrus_communis	pycom03g14680 pycom09g03780 pycom17g09800
rosa_chinensis	RchiOBHm_Chr2g0158121 RchiOBHm_Chr5g0041181
rosa_laevigata	RLG00000021061
rosa_multiflora	Rmu_sc0005982.1_g000009 Rmu_sc0007618.1_g000017 Rmu_sc0032555.1_g000001 Rmu_sc0037123.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039460 Rroxscaffold_2G00091650
rosa_rugosa	Rorug05G0190200
rosa_samantha	Rh2AG532200 Rh2BG546300 Rh2CG516100 Rh2DG554800 Rh5AG276300 Rh5CG313300 Rh5DG289300
rosa_wichuraiana	Rw2G044000 Rw5G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccIII	TCCGGA	1 cut(s)	102
AciI	CCGC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	127, 172
AjnI	CCWGG	3 cut(s)	18, 45, 78
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	209
Aor13HI	TCCGGA	1 cut(s)	102
AoxI	GGCC	2 cut(s)	196, 210
ApeKI	GCWGC	1 cut(s)	268
AspLEI	GCGC	2 cut(s)	53, 287
AspS9I	GGNCC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	4 cut(s)	77, 188, 232, 239
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	3 cut(s)	20, 47, 80
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	295
BfoI	RGCGCY	2 cut(s)	54, 288
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	3 cut(s)	20, 47, 80
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	3 cut(s)	20, 47, 80
BmsI	GCATC	2 cut(s)	250, 255
BpmI	CTGGAG	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	102
BseBI	CCWGG	3 cut(s)	20, 47, 80
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	2 cut(s)	88, 256
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	255
BsgI	GTGCAG	1 cut(s)	254
BshFI	GGCC	2 cut(s)	198, 212
BshNI	GGYRCC	1 cut(s)	284
BshVI	ATCGAT	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsmI	GAATGC	2 cut(s)	145, 182
BsnI	GGCC	2 cut(s)	198, 212
Bsp13I	TCCGGA	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	198, 212
BspCNI	CTCAG	1 cut(s)	219
BspDI	ATCGAT	1 cut(s)	258
BspEI	TCCGGA	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	1 cut(s)	151
BssNI	GRCGYC	1 cut(s)	285
Bst2UI	CCWGG	3 cut(s)	20, 47, 80
Bst4CI	ACNGT	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	88, 256
BstH2I	RGCGCY	2 cut(s)	54, 288
BstHHI	GCGC	2 cut(s)	53, 287
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	151
BstNI	CCWGG	3 cut(s)	20, 47, 80
BstSCI	CCNGG	3 cut(s)	18, 45, 78
BstV1I	GCAGC	1 cut(s)	255
Bsu15I	ATCGAT	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	198, 212
BsuTUI	ATCGAT	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	88, 256
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	2 cut(s)	53, 287
Cfr13I	GGNCC	1 cut(s)	210
ClaI	ATCGAT	1 cut(s)	258
CviJI	RGCY	5 cut(s)	37, 78, 133, 198, 212
CviKI_1	RGCY	5 cut(s)	37, 78, 133, 198, 212
DdeI	CTNAG	1 cut(s)	206
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	196
EcoRII	CCWGG	3 cut(s)	18, 45, 78
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
Esp3I	CGTCTC	1 cut(s)	209
FaiI	YATR	1 cut(s)	137
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	2 cut(s)	95, 263
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	1 cut(s)	295
GlaI	GCGC	2 cut(s)	52, 286
GluI	GCNGC	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	2 cut(s)	54, 288
HaeIII	GGCC	2 cut(s)	198, 212
HapII	CCGG	1 cut(s)	103
HhaI	GCGC	2 cut(s)	53, 287
Hin1I	GRCGYC	1 cut(s)	285
Hin6I	GCGC	2 cut(s)	51, 285
HinP1I	GCGC	2 cut(s)	51, 285
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	103
Hpy188III	TCNNGA	3 cut(s)	73, 103, 224
Hpy99I	CGWCG	1 cut(s)	204
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	2 cut(s)	182, 271
HpyF3I	CTNAG	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	285
HspAI	GCGC	2 cut(s)	51, 285
KasI	GGCGCC	1 cut(s)	284
Kpn2I	TCCGGA	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	151
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	2 cut(s)	250, 255
MaeI	CTAG	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	2 cut(s)	139, 254
MfeI	CAATTG	1 cut(s)	122
MluCI	AATT	1 cut(s)	122
Mly113I	GGCGCC	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	5 cut(s)	16, 19, 74, 85, 275
MroI	TCCGGA	1 cut(s)	102
MseI	TTAA	1 cut(s)	108
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	3 cut(s)	20, 47, 80
MunI	CAATTG	1 cut(s)	122
Mva1269I	GAATGC	2 cut(s)	145, 182
MvaI	CCWGG	3 cut(s)	20, 47, 80
NarI	GGCGCC	1 cut(s)	285
NdeII	GATC	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	286
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	10
PctI	GAATGC	2 cut(s)	145, 182
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	1 cut(s)	214
PluTI	GGCGCC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	214
Psp6I	CCWGG	3 cut(s)	18, 45, 78
PspGI	CCWGG	3 cut(s)	18, 45, 78
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	3 cut(s)	20, 47, 80
SetI	ASST	3 cut(s)	66, 96, 135
SfaNI	GCATC	2 cut(s)	250, 255
SfoI	GGCGCC	1 cut(s)	286
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	1 cut(s)	39
SspDI	GGCGCC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	295
StyD4I	CCNGG	3 cut(s)	18, 45, 78
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	2 cut(s)	192, 258
TasI	AATT	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	2 cut(s)	152, 267
XspI	CTAG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.