Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004029

Physical Location & Seq

Genomic Coordinates Forward (+)

30857026 .. 30858276

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1211000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTCAGGCGTCACGAACCAGGAGGAGGACAAGAAGCCCACCGATCAGTCCGCCCACATCAACCTCAAAGTCAAGGGCCAGGATGGGAATGAAGTGTTTTTCAGGATCAAGAGAAGTACCCAACTGAAGAAGCTTATGAACGCATACTGCGACAGACAGTCGGTTGAATTCAACTCTATTGCATTCCTGTTTGATGGCCGTCGTCTGAGAGCCGAGCAGACCCCTGATGAGTTGGAAATGGAAGATGGGGATGAAATAGATGCAATGCTGCATCAAACTGGAGGTTCTTTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

99

Amino Acids

11.16

Weight (kDa)

4.95

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	20 - 90	3.3e-26	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	22 - 92	4e-16	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55160 AT5G55160
fragaria_vesca	FvH4_3g23390 FvH4_3g23390 FvH4_6g42200
malus_domestica	MD03G1194700.v1.1 MD09G1113800.v1.1 MD11G1211000.v1.1 MD17G1103900.v1.1
prunus_persica	Prupe.3G210800_v2.0.a1 Prupe.4G221800_v2.0.a1
pyrus_communis	pycom03g14680 pycom09g03780 pycom17g09800
rosa_chinensis	RchiOBHm_Chr2g0158121 RchiOBHm_Chr5g0041181
rosa_laevigata	RLG00000021061
rosa_multiflora	Rmu_sc0005982.1_g000009 Rmu_sc0007618.1_g000017 Rmu_sc0032555.1_g000001 Rmu_sc0037123.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039460 Rroxscaffold_2G00091650
rosa_rugosa	Rorug05G0190200
rosa_samantha	Rh2AG532200 Rh2BG546300 Rh2CG516100 Rh2DG554800 Rh5AG276300 Rh5CG313300 Rh5DG289300
rosa_wichuraiana	Rw2G044000 Rw5G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	167, 172
AhdI	GACNNNNNGTC	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	18, 78
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	2 cut(s)	76, 196
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	3 cut(s)	77, 188, 239
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	2 cut(s)	20, 80
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	20, 80
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	20, 80
BmsI	GCATC	2 cut(s)	250, 280
BsaHI	GRCGYC	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	20, 80
BseGI	GGATG	2 cut(s)	88, 256
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	255
BshFI	GGCC	2 cut(s)	78, 198
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	78, 198
Bsp143I	GATC	2 cut(s)	43, 105
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	2 cut(s)	78, 198
BspCNI	CTCAG	1 cut(s)	198
BspPI	GGATC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	43, 105
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	20, 80
Bst4CI	ACNGT	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	88, 256
BstKTI	GATC	2 cut(s)	46, 108
BstMBI	GATC	2 cut(s)	43, 105
BstNI	CCWGG	2 cut(s)	20, 80
BstSCI	CCNGG	2 cut(s)	18, 78
BstV1I	GCAGC	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	78, 198
BtsCI	GGATG	2 cut(s)	88, 256
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	117
CviJI	RGCY	5 cut(s)	37, 78, 133, 198, 212
CviKI_1	RGCY	5 cut(s)	37, 78, 133, 198, 212
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	2 cut(s)	45, 107
DpnII	GATC	2 cut(s)	43, 105
DriI	GACNNNNNGTC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	196
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	18, 78
FaiI	YATR	2 cut(s)	137, 145
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	2 cut(s)	95, 263
Fsp4HI	GCNGC	1 cut(s)	269
GluI	GCNGC	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	78, 198
Hin1I	GRCGYC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	3 cut(s)	13, 103, 109
Hpy99I	CGWCG	1 cut(s)	204
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	182, 263, 271
HpyF3I	CTNAG	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	43, 105
LpnPI	CCDG	8 cut(s)	5, 32, 65, 88, 92, 200, 237, 264
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	2 cut(s)	250, 280
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	45, 107
MboI	GATC	2 cut(s)	43, 105
MboII	GAAGA	2 cut(s)	139, 254
MluCI	AATT	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	16, 19, 74, 275
MspR9I	CCNGG	2 cut(s)	20, 80
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	2 cut(s)	20, 80
NdeII	GATC	2 cut(s)	43, 105
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PctI	GAATGC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	270
Psp6I	CCWGG	2 cut(s)	18, 78
PspGI	CCWGG	2 cut(s)	18, 78
PspPI	GGNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	2 cut(s)	43, 105
Sau96I	GGNCC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	20, 80
SetI	ASST	3 cut(s)	66, 135, 286
SfaNI	GCATC	2 cut(s)	250, 280
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	18, 78
TaaI	ACNGT	1 cut(s)	159
TasI	AATT	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	3 cut(s)	105, 152, 267
XapI	RAATTY	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.