FvH4_3g23370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016023
Physical Location & Seq
Forward (+)
16415575 .. 16416575
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23370.t1

Sequence Viewer

Length: 375 bp
ATGAGATGCCTTCTTCTTCCCCTCTCATCATCCTCAAGATCCTTGCTTATTCTGAGGCCCTTCACATCACCATCGTCACAATCATGTCCTCCTCTTAACCAGCTTGAGAGATGTTTTGGTAGCAGCCGTGGGCAGGAGGCGCAGCAGATGACTAGGGCGCCATCGACAGCTGAAGAGTTCAAGAGAGTTGCAGAGGAGAAGCTGAGGGAACTCAGGGAAGCCGAGCAAAGCGTGGCCAGTCAGACCTTCGAGAAGACTTATGATGCTACCGAGGAGGCTGCTTTAGGTGACGGCAAACCTGAGTCCGTCAAGGAAAGGTACAAGCATCATGAACCGGGGGCCGATTGTCGTAAGAGGACACATGATGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.98

Weight (kDa)

5.96

Isoelectric Point (pI)

80.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55135
fragaria_vesca FvH4_3g23370
malus_domestica MD03G1195000.v1.1
prunus_persica Prupe.4G221600_v2.0.a1
pyrus_communis pycom03g14710
rosa_chinensis RchiOBHm_Chr5g0041161
rosa_laevigata RLG00000034032
rosa_multiflora Rmu_sc0007618.1_g000020
rosa_roxburghii Rroxscaffold_1G00039490
rosa_rugosa Rorug05G0190200
rosa_samantha Rh5AG276100 Rh5BG281000 Rh5CG313200 Rh5DG289100
rosa_wichuraiana Rw5G025970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 157
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 1 cut(s) 181
AluBI AGCT 3 cut(s) 103, 170, 202
AluI AGCT 3 cut(s) 103, 170, 202
AlwI GGATC 1 cut(s) 33
AoxI GGCC 3 cut(s) 56, 234, 339
ApeKI GCWGC 3 cut(s) 123, 142, 278
AspLEI GCGC 2 cut(s) 142, 160
AspS9I GGNCC 2 cut(s) 57, 339
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 60, 299
BalI TGGCCA 1 cut(s) 236
BanI GGYRCC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 260
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 135, 154, 265
BccI CCATC 2 cut(s) 79, 169
BceAI ACGGC 2 cut(s) 111, 307
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BcnI CCSGG 1 cut(s) 336
BfaI CTAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 161
BisI GCNGC 3 cut(s) 124, 143, 279
BlsI GCNGC 3 cut(s) 125, 144, 280
Bme1390I CCNGG 1 cut(s) 336
BmgT120I GGNCC 2 cut(s) 57, 339
BmiI GGNNCC 2 cut(s) 159, 340
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 2 cut(s) 253, 334
BpiI GAAGAC 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 203
BpuEI CTTGAG 2 cut(s) 19, 125
BpuMI CCSGG 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 3 cut(s) 127, 270, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 237
BseDI CCNNGG 3 cut(s) 127, 270, 335
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 4 cut(s) 44, 194, 226, 291
BseNI ACTGG 1 cut(s) 237
BseRI GAGGAG 3 cut(s) 81, 209, 287
BseXI GCAGC 3 cut(s) 135, 154, 265
BshFI GGCC 3 cut(s) 58, 236, 341
BshNI GGYRCC 1 cut(s) 157
BsiSI CCGG 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 133
BsnI GGCC 3 cut(s) 58, 236, 341
Bsp143I GATC 1 cut(s) 38
BspANI GGCC 3 cut(s) 58, 236, 341
BspCNI CTCAG 4 cut(s) 45, 195, 225, 292
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 159, 340
BspPI GGATC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 157
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 3 cut(s) 127, 270, 335
BssMI GATC 1 cut(s) 38
BssNI GRCGYC 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 158
BstDEI CTNAG 4 cut(s) 53, 203, 212, 300
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 142, 160
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 334
BstV1I GCAGC 3 cut(s) 135, 154, 265
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 3 cut(s) 58, 236, 341
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 1 cut(s) 29
CciI TCATGA 1 cut(s) 328
CfoI GCGC 2 cut(s) 142, 160
Cfr13I GGNCC 2 cut(s) 57, 339
Csp6I GTAC 1 cut(s) 319
CviAII CATG 3 cut(s) 84, 329, 362
CviJI RGCY 9 cut(s) 58, 103, 126, 170, 202, 221, 236, 278, 341
CviKI_1 RGCY 9 cut(s) 58, 103, 126, 170, 202, 221, 236, 278, 341
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 4 cut(s) 53, 203, 212, 300
DinI GGCGCC 1 cut(s) 159
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 159
EheI GGCGCC 1 cut(s) 159
FaeI CATG 3 cut(s) 87, 332, 365
FaiI YATR 4 cut(s) 85, 261, 330, 363
FatI CATG 3 cut(s) 83, 328, 361
Fnu4HI GCNGC 3 cut(s) 124, 143, 279
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 3 cut(s) 124, 143, 279
FspBI CTAG 1 cut(s) 153
GlaI GCGC 2 cut(s) 141, 159
GluI GCNGC 3 cut(s) 124, 143, 279
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 3 cut(s) 58, 236, 341
HapII CCGG 1 cut(s) 335
HhaI GCGC 2 cut(s) 142, 160
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 3 cut(s) 87, 332, 365
Hin6I GCGC 2 cut(s) 140, 158
HinP1I GCGC 2 cut(s) 140, 158
HinfI GANTC 1 cut(s) 302
HpaII CCGG 1 cut(s) 335
HphI GGTGA 2 cut(s) 60, 299
Hpy188I TCNGA 2 cut(s) 54, 243
Hpy188III TCNNGA 4 cut(s) 36, 181, 250, 329
HpyAV CCTTC 3 cut(s) 20, 70, 256
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 4 cut(s) 53, 203, 212, 300
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 3 cut(s) 87, 332, 365
HspAI GCGC 2 cut(s) 140, 158
KasI GGCGCC 1 cut(s) 157
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 6 cut(s) 113, 119, 199, 250, 312, 348
Lsp1109I GCAGC 3 cut(s) 135, 154, 265
LweI GCATC 2 cut(s) 253, 334
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 75, 287
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 4 cut(s) 5, 8, 185, 265
MflI RGATCY 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 236
MluNI TGGCCA 1 cut(s) 236
Mly113I GGCGCC 1 cut(s) 158
MlyI GAGTC 1 cut(s) 311
Mox20I TGGCCA 1 cut(s) 236
MscI TGGCCA 1 cut(s) 236
MseI TTAA 2 cut(s) 96, 373
MslI CAYNNNNRTG 2 cut(s) 82, 366
Msp20I TGGCCA 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 139
NarI GGCGCC 1 cut(s) 158
NciI CCSGG 1 cut(s) 336
NdeII GATC 1 cut(s) 38
NlaIII CATG 3 cut(s) 87, 332, 365
NlaIV GGNNCC 2 cut(s) 159, 340
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 2 cut(s) 75, 287
PagI TCATGA 1 cut(s) 328
PkrI GCNGC 3 cut(s) 125, 144, 280
PleI GAGTC 1 cut(s) 310
PluTI GGCGCC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 159, 340
PspPI GGNCC 2 cut(s) 57, 339
PsuI RGATCY 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 2 cut(s) 82, 366
SaqAI TTAA 2 cut(s) 96, 373
SatI GCNGC 3 cut(s) 124, 143, 279
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 2 cut(s) 57, 339
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 336
SetI ASST 7 cut(s) 105, 172, 204, 248, 289, 301, 320
SfaNI GCATC 2 cut(s) 253, 334
SfoI GGCGCC 1 cut(s) 159
SmiMI CAYNNNNRTG 2 cut(s) 82, 366
SmlI CTYRAG 2 cut(s) 34, 104
SmoI CTYRAG 2 cut(s) 34, 104
SspDI GGCGCC 1 cut(s) 157
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 334
TaqI TCGA 2 cut(s) 164, 249
Tru1I TTAA 2 cut(s) 96, 373
Tru9I TTAA 2 cut(s) 96, 373
TseFI GTSAC 2 cut(s) 75, 287
TseI GCWGC 3 cut(s) 123, 142, 278
Tsp45I GTSAC 2 cut(s) 75, 287
TspDTI ATGAA 1 cut(s) 345
TspGWI ACGGA 1 cut(s) 295
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.