MD03G1195000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016023
Physical Location & Seq
Reverse (-)
26699616 .. 26700859
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1195000.v1.1.491

Sequence Viewer

Length: 363 bp
ATGGCAGGCCATATTTTTACTCTCCACACCTTCCCATCAAGATCAAGATCCACAGTTTTGAAGTCATTAGCAGCATGTCATTACGCAACCAAGCAGAGATATAGCAGCCAAGGGAGCAAGGGAGAGCACGACGGCAACATAGATATAGAAGAGAGAGCACCTTCTATGGCTGAGGAGTTCAAGAGAATGGCCGAGGAGAAGCTGAAGGCGGCGGAGCAAGATGTGGCCAGCCAGACAGTGGAGAAGACATACGATGGAACAGAGGAAGCTACCGTGGGTGACTCTAACGTCGACTCTGTCAAGAATAGGTACAAGGAACATGAGCCCGGGGCTGACTACAAAGGGAGGCCACATGACGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.39

Weight (kDa)

5.67

Isoelectric Point (pI)

73.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55135
fragaria_vesca FvH4_3g23370
malus_domestica MD03G1195000.v1.1
prunus_persica Prupe.4G221600_v2.0.a1
pyrus_communis pycom03g14710
rosa_chinensis RchiOBHm_Chr5g0041161
rosa_laevigata RLG00000034032
rosa_multiflora Rmu_sc0007618.1_g000020
rosa_roxburghii Rroxscaffold_1G00039490
rosa_rugosa Rorug05G0190200
rosa_samantha Rh5AG276100 Rh5BG281000 Rh5CG313200 Rh5DG289100
rosa_wichuraiana Rw5G025970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 287
AccB7I CCANNNNNTGG 1 cut(s) 238
AccI GTMKAC 1 cut(s) 291
AciI CCGC 2 cut(s) 209, 212
AclWI GGATC 1 cut(s) 42
AcoI YGGCCR 2 cut(s) 189, 225
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 2 cut(s) 61, 181
AluBI AGCT 2 cut(s) 202, 269
AluI AGCT 2 cut(s) 202, 269
Alw21I GWGCWC 2 cut(s) 129, 160
AlwI GGATC 1 cut(s) 42
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 4 cut(s) 7, 189, 225, 347
ApeKI GCWGC 2 cut(s) 71, 105
AsuC2I CCSGG 2 cut(s) 327, 328
AsuHPI GGTGA 1 cut(s) 290
AvaI CYCGRG 1 cut(s) 326
BalI TGGCCA 1 cut(s) 227
BanII GRGCYC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 2 cut(s) 129, 160
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 83, 117
BccI CCATC 2 cut(s) 43, 248
BceAI ACGGC 1 cut(s) 148
BcnI CCSGG 2 cut(s) 327, 328
BisI GCNGC 3 cut(s) 72, 106, 210
BlsI GCNGC 3 cut(s) 73, 107, 211
Bme1390I CCNGG 2 cut(s) 327, 328
BmeT110I CYCGRG 1 cut(s) 326
BmrFI CCNGG 2 cut(s) 327, 328
BpiI GAAGAC 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 171
BpuMI CCSGG 2 cut(s) 327, 328
BsaBI GATNNNNATC 1 cut(s) 46
BsaJI CCNNGG 5 cut(s) 109, 192, 273, 326, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse8I GATNNNNATC 1 cut(s) 46
BseDI CCNNGG 5 cut(s) 109, 192, 273, 326, 327
BseJI GATNNNNATC 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 2 cut(s) 188, 209
BseXI GCAGC 2 cut(s) 83, 117
BshFI GGCC 4 cut(s) 9, 191, 227, 349
BsiHKAI GWGCWC 2 cut(s) 129, 160
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 238
BsnI GGCC 4 cut(s) 9, 191, 227, 349
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 129, 160, 327
Bsp143I GATC 2 cut(s) 41, 47
BspACI CCGC 2 cut(s) 209, 212
BspANI GGCC 4 cut(s) 9, 191, 227, 349
BspCNI CTCAG 1 cut(s) 163
BspPI GGATC 1 cut(s) 42
BssECI CCNNGG 5 cut(s) 109, 192, 273, 326, 327
BssMI GATC 2 cut(s) 41, 47
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 3 cut(s) 55, 238, 274
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 7, 229
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 273
BstKTI GATC 2 cut(s) 44, 50
BstMBI GATC 2 cut(s) 41, 47
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 2 cut(s) 325, 326
BstV1I GCAGC 2 cut(s) 83, 117
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BsuRI GGCC 4 cut(s) 9, 191, 227, 349
BtgI CCRYGG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 7, 229
Cfr9I CCCGGG 1 cut(s) 326
Csp6I GTAC 1 cut(s) 310
CviAII CATG 3 cut(s) 75, 320, 353
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 1 cut(s) 171
DpnI GATC 2 cut(s) 43, 49
DpnII GATC 2 cut(s) 41, 47
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 2 cut(s) 189, 225
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
EciI GGCGGA 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 3 cut(s) 78, 323, 356
FaiI YATR 9 cut(s) 12, 76, 102, 140, 146, 167, 250, 321, 354
FatI CATG 3 cut(s) 74, 319, 352
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 72, 106, 210
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 3 cut(s) 72, 106, 210
GluI GCNGC 3 cut(s) 72, 106, 210
HaeIII GGCC 4 cut(s) 9, 191, 227, 349
HapII CCGG 1 cut(s) 327
Hin1II CATG 3 cut(s) 78, 323, 356
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 2 cut(s) 281, 293
HpaII CCGG 1 cut(s) 327
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 292
Hpy188III TCNNGA 4 cut(s) 39, 45, 181, 301
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 2 cut(s) 134, 293
HpyAV CCTTC 3 cut(s) 40, 171, 199
HpyCH4III ACNGT 3 cut(s) 55, 238, 274
HpyCH4IV ACGT 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 3 cut(s) 78, 323, 356
Kzo9I GATC 2 cut(s) 41, 47
LmnI GCTCC 2 cut(s) 114, 214
LpnPI CCDG 3 cut(s) 241, 245, 340
Lsp1109I GCAGC 2 cut(s) 83, 117
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 278
MalI GATC 2 cut(s) 43, 49
MboI GATC 2 cut(s) 41, 47
MboII GAAGA 2 cut(s) 161, 256
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 3 cut(s) 129, 160, 327
MlsI TGGCCA 1 cut(s) 227
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 2 cut(s) 275, 287
MnlI CCTC 4 cut(s) 166, 187, 256, 339
Mox20I TGGCCA 1 cut(s) 227
MscI TGGCCA 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 2 cut(s) 327, 328
MwoI GCNNNNNNNGC 1 cut(s) 114
NciI CCSGG 2 cut(s) 327, 328
NdeII GATC 2 cut(s) 41, 47
NlaIII CATG 3 cut(s) 78, 323, 356
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 278
NspI RCATGY 1 cut(s) 78
PflFI GACNNNGTC 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 3 cut(s) 73, 107, 211
PleI GAGTC 2 cut(s) 275, 287
PpsI GAGTC 2 cut(s) 275, 287
PsuI RGATCY 1 cut(s) 47
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SalI GTCGAC 1 cut(s) 290
SatI GCNGC 3 cut(s) 72, 106, 210
Sau3AI GATC 2 cut(s) 41, 47
SchI GAGTC 2 cut(s) 275, 287
ScrFI CCNGG 2 cut(s) 327, 328
SduI GDGCHC 3 cut(s) 129, 160, 327
SetI ASST 6 cut(s) 32, 163, 204, 271, 291, 311
SmaI CCCGGG 1 cut(s) 328
SsiI CCGC 2 cut(s) 209, 212
StyD4I CCNGG 2 cut(s) 325, 326
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 3 cut(s) 55, 238, 274
TaiI ACGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 291
TauI GCSGC 1 cut(s) 212
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 2 cut(s) 71, 105
Tsp45I GTSAC 1 cut(s) 278
TspMI CCCGGG 1 cut(s) 326
TspRI CASTG 1 cut(s) 243
Tth111I GACNNNGTC 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 238
XceI RCATGY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmaI CCCGGG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.