Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010819

Physical Location & Seq

Genomic Coordinates Reverse (-)

22396426 .. 22397446

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G55210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAAGGTGTAGGATCGAGATTGAGCCGGACGTCATCGAGATACAGTGGTCCGGCGGCGACGGCGGTGTTCAGTGGCCGTGTAAGGAAATGGAAGAAGAAGTGGGTACGTGTCTCAACCTCATCCGTCGGTGTTTTCAGAGCATCTAAATCCAACGGTCGTAACAACAGCAACAACAGTAACTCACCACACCATCTACTTCTCCATAAGTGGACTCCACTTACCTCAGCGACGGTTACTGCCTCCGACGCTAATGGTTCCGGTGAGACAGAGGAGTCGCCTAAGCGAAGATTCAGATACGCTCCAATTGCGATGCTTGAGCATAGAGAAAAAGTGATTTCTAAGGATTCTGAAATTGAAGAGACTGAAGAATTCGACACTGAATCTCCATTACCTAAAGCTGTTGAGCTAGACATGAACCTAACAGACTCAGACCAAACTAAGGAAGCAAAAACTGGTAATTTGAATCTGGGACTGTGTCTGAATTCTGAAGGGACTGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.53

Weight (kDa)

7.88

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55210
fragaria_vesca	FvH4_3g23530 FvH4_3g23530 FvH4_3g23530
malus_domestica	MD03G1193400.v1.1 MD11G1209600.v1.1
prunus_persica	Prupe.4G223100_v2.0.a1
pyrus_communis	pycom11g18510
rosa_chinensis	RchiOBHm_Chr5g0041531
rosa_laevigata	RLG00000034076
rosa_multiflora	Rmu_co8457507.1_g000001 Rmu_sc0014067.1_g000008 Rmu_sc0021997.1_g000002 Rmu_sc0029151.1_g000002
rosa_roxburghii	Rroxscaffold_1G00039000
rosa_rugosa	Rorug05G0193400
rosa_samantha	Rh5AG278900 Rh5BG283300 Rh5CG316200
rosa_wichuraiana	Rw5G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	274
AatII	GACGTC	1 cut(s)	35
AciI	CCGC	2 cut(s)	56, 65
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	371, 484
AcuI	CTGAAG	1 cut(s)	387
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	442
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	359, 466
AluBI	AGCT	2 cut(s)	401, 409
AluI	AGCT	2 cut(s)	401, 409
Alw26I	GTCTC	3 cut(s)	118, 260, 356
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	76
ApoI	RAATTY	2 cut(s)	371, 484
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	177, 275
AvaII	GGWCC	1 cut(s)	50
BaeI	ACNNNNGTAYC	2 cut(s)	34, 67
BbvCI	CCTCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	201
BceAI	ACGGC	2 cut(s)	63, 78
BcoDI	GTCTC	3 cut(s)	118, 260, 356
BfaI	CTAG	1 cut(s)	410
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	259
BmsI	GCATC	2 cut(s)	152, 303
Bpu10I	CCTNAGC	2 cut(s)	226, 282
BpuEI	CTTGAG	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	32
BsaWI	WCCGGW	1 cut(s)	260
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	460
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	240, 444
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	287
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	160
BsiSI	CCGG	3 cut(s)	28, 53, 261
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	3 cut(s)	118, 260, 356
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	2 cut(s)	56, 65
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	2 cut(s)	239, 443
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	460
BssMI	GATC	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	32
Bst4CI	ACNGT	5 cut(s)	47, 158, 179, 235, 477
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	110
BstDEI	CTNAG	5 cut(s)	226, 282, 342, 430, 441
BstF5I	GGATG	1 cut(s)	122
BstKTI	GATC	1 cut(s)	17
BstMAI	GTCTC	3 cut(s)	118, 260, 356
BstMBI	GATC	1 cut(s)	14
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 248, 308
BsuRI	GGCC	1 cut(s)	78
BtgZI	GCGATG	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	122
BtsIMutI	CAGTG	3 cut(s)	52, 79, 378
Cfr13I	GGNCC	1 cut(s)	50
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	1 cut(s)	415
CviJI	RGCY	4 cut(s)	27, 78, 401, 409
CviKI_1	RGCY	4 cut(s)	27, 78, 401, 409
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	5 cut(s)	226, 282, 342, 430, 441
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
DrdI	GACNNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	387
EcoRI	GAATTC	2 cut(s)	371, 484
FaeI	CATG	1 cut(s)	418
FaiI	YATR	3 cut(s)	207, 324, 416
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	1 cut(s)	414
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	3 cut(s)	28, 53, 261
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	418
HinfI	GANTC	7 cut(s)	214, 275, 291, 347, 383, 428, 466
HpaII	CCGG	3 cut(s)	28, 53, 261
HphI	GGTGA	2 cut(s)	177, 275
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	7 cut(s)	140, 247, 296, 352, 433, 483, 490
Hpy188III	TCNNGA	2 cut(s)	18, 39
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	4 cut(s)	64, 131, 235, 251
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	5 cut(s)	47, 158, 179, 235, 477
HpyCH4IV	ACGT	2 cut(s)	32, 109
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 248, 308
HpyF3I	CTNAG	5 cut(s)	226, 282, 342, 430, 441
HpySE526I	ACGT	2 cut(s)	32, 109
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	5 cut(s)	41, 66, 274, 441, 455
LweI	GCATC	2 cut(s)	152, 303
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	2 cut(s)	32, 109
MaeIII	GTNAC	3 cut(s)	161, 179, 235
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	5 cut(s)	106, 109, 300, 371, 380
MfeI	CAATTG	1 cut(s)	306
MluCI	AATT	5 cut(s)	306, 354, 371, 460, 484
MlyI	GAGTC	3 cut(s)	208, 284, 422
MmeI	TCCRAC	2 cut(s)	177, 270
MnlI	CCTC	4 cut(s)	130, 235, 253, 265
MspI	CCGG	3 cut(s)	28, 53, 261
MunI	CAATTG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	62, 248, 308
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	418
NlaIV	GGNNCC	1 cut(s)	259
PfeI	GAWTC	4 cut(s)	291, 347, 383, 466
PflFI	GACNNNGTC	1 cut(s)	477
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	3 cut(s)	208, 283, 422
PpsI	GAGTC	3 cut(s)	208, 283, 422
Ppu21I	YACGTR	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	50
PsyI	GACNNNGTC	1 cut(s)	477
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	3 cut(s)	208, 284, 422
SetI	ASST	9 cut(s)	10, 35, 112, 122, 227, 397, 403, 411, 423
SfaNI	GCATC	2 cut(s)	152, 303
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	5 cut(s)	306, 354, 371, 460, 484
SsiI	CCGC	2 cut(s)	56, 65
SspMI	CTAG	1 cut(s)	410
TaaI	ACNGT	5 cut(s)	47, 158, 179, 235, 477
TaiI	ACGT	2 cut(s)	35, 112
TaqI	TCGA	3 cut(s)	17, 38, 375
TasI	AATT	5 cut(s)	306, 354, 371, 460, 484
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	4 cut(s)	291, 347, 383, 466
TscAI	CASTG	3 cut(s)	52, 79, 385
TspDTI	ATGAA	1 cut(s)	431
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	3 cut(s)	52, 79, 385
Tth111I	GACNNNGTC	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	2 cut(s)	371, 484
XspI	CTAG	1 cut(s)	410
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.