Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021997.1

Orthogroup ID

OG0010819

Physical Location & Seq

Genomic Coordinates Forward (+)

12087 .. 14035

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021997.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggagggagccgggtccagactgagccgagcgtcctccaggtacggcccaacaaccaccgtcttcagcggcccggtcaggaggtggaagaagaagtgggtccacgtgccgccatcaccgtcctccttcagctctcgctcccaatccaacgcccgaaacaacgacaacagctctcgcctcctcctttgccgctggaccccaatttcttctgcacctaactccgcagccgccgagcccggctccggcgacgagcggccccgccggaagttccgctacacgcctgttgttttgctagaggagcagaggaaggcggttgagaaaaggattgaggacatggaggatgcggagaacgctagtgagggagaccaatctactgtgctgagtgataagatgtatgggaagtcaaacgctgatcaagtcaaggagcaagaagctgaggaattggataataatggttcgcaggcctcaagtataaacaatctgaatttagatctgggcttgcaaggtcacagtgtcaacctggaattaatgaacaaaatgaaagaggctcagacgaaaactgcaagctcaggtgggttttggttgcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

21.66

Weight (kDa)

8.68

Isoelectric Point (pI)

70.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55210
fragaria_vesca	FvH4_3g23530 FvH4_3g23530 FvH4_3g23530
malus_domestica	MD03G1193400.v1.1 MD11G1209600.v1.1
prunus_persica	Prupe.4G223100_v2.0.a1
pyrus_communis	pycom11g18510
rosa_chinensis	RchiOBHm_Chr5g0041531
rosa_laevigata	RLG00000034076
rosa_multiflora	Rmu_co8457507.1_g000001 Rmu_sc0014067.1_g000008 Rmu_sc0021997.1_g000002 Rmu_sc0029151.1_g000002
rosa_roxburghii	Rroxscaffold_1G00039000
rosa_rugosa	Rorug05G0193400
rosa_samantha	Rh5AG278900 Rh5BG283300 Rh5CG316200
rosa_wichuraiana	Rw5G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	484
AcuI	CTGAAG	2 cut(s)	49, 112
AcvI	CACGTG	1 cut(s)	106
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	242
AjnI	CCWGG	2 cut(s)	38, 519
AluBI	AGCT	4 cut(s)	132, 171, 434, 567
AluI	AGCT	4 cut(s)	132, 171, 434, 567
Alw26I	GTCTC	1 cut(s)	357
AoxI	GGCC	4 cut(s)	46, 70, 254, 462
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	484
AseI	ATTAAT	1 cut(s)	527
AspS9I	GGNCC	6 cut(s)	15, 47, 71, 100, 195, 255
AsuC2I	CCSGG	3 cut(s)	13, 74, 237
AsuHPI	GGTGA	1 cut(s)	108
AvaII	GGWCC	3 cut(s)	15, 100, 195
BanII	GRGCYC	1 cut(s)	237
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BbrPI	CACGTG	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	55
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	2 cut(s)	40, 521
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	3 cut(s)	13, 74, 237
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	2 cut(s)	293, 354
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	6 cut(s)	70, 110, 190, 225, 228, 254
BlsI	GCNGC	6 cut(s)	71, 111, 191, 226, 229, 255
Bme1390I	CCNGG	5 cut(s)	13, 40, 74, 237, 521
Bme18I	GGWCC	3 cut(s)	15, 100, 195
BmgT120I	GGNCC	6 cut(s)	15, 47, 71, 100, 195, 255
BmiI	GGNNCC	6 cut(s)	10, 16, 101, 197, 241, 257
BmrFI	CCNGG	5 cut(s)	13, 40, 74, 237, 521
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	55
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpmI	CTGGAG	1 cut(s)	22
Bpu10I	CCTNAGC	2 cut(s)	435, 568
BpuEI	CTTGAG	1 cut(s)	451
BpuMI	CCSGG	3 cut(s)	13, 74, 237
BsaAI	YACGTR	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	40, 521
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	5 cut(s)	14, 371, 426, 563, 582
BseRI	GAGGAG	2 cut(s)	170, 311
BseXI	GCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	4 cut(s)	48, 72, 256, 464
BsiSI	CCGG	5 cut(s)	12, 74, 237, 243, 262
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	1 cut(s)	357
BsnI	GGCC	4 cut(s)	48, 72, 256, 464
Bso31I	GGTCTC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	412, 490
BspANI	GGCC	4 cut(s)	48, 72, 256, 464
BspCNI	CTCAG	5 cut(s)	15, 372, 427, 562, 581
BspLI	GGNNCC	6 cut(s)	10, 16, 101, 197, 241, 257
BspTNI	GGTCTC	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	253
BssMI	GATC	2 cut(s)	412, 490
Bst2UI	CCWGG	2 cut(s)	40, 521
Bst4CI	ACNGT	4 cut(s)	61, 120, 376, 512
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	3 cut(s)	462, 500, 565
BstDEI	CTNAG	5 cut(s)	23, 380, 435, 549, 568
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	2 cut(s)	415, 493
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	2 cut(s)	412, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 350
BstNI	CCWGG	2 cut(s)	40, 521
BstSCI	CCNGG	5 cut(s)	11, 38, 72, 235, 519
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	4 cut(s)	48, 72, 256, 464
BtsCI	GGATG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	517
Cac8I	GCNNGC	3 cut(s)	462, 500, 565
Cfr13I	GGNCC	6 cut(s)	15, 47, 71, 100, 195, 255
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	1 cut(s)	334
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	5 cut(s)	23, 380, 435, 549, 568
DpnI	GATC	2 cut(s)	414, 492
DpnII	GATC	2 cut(s)	412, 490
Eco147I	AGGCCT	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	357
Eco47I	GGWCC	3 cut(s)	15, 100, 195
Eco57I	CTGAAG	2 cut(s)	49, 112
Eco72I	CACGTG	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	38, 519
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	1 cut(s)	337
FaiI	YATR	3 cut(s)	335, 396, 473
FatI	CATG	1 cut(s)	333
FauI	CCCGC	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	6 cut(s)	70, 110, 190, 225, 228, 254
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	6 cut(s)	70, 110, 190, 225, 228, 254
FspBI	CTAG	2 cut(s)	293, 354
GluI	GCNGC	6 cut(s)	70, 110, 190, 225, 228, 254
GsuI	CTGGAG	1 cut(s)	22
HaeIII	GGCC	4 cut(s)	48, 72, 256, 464
HapII	CCGG	5 cut(s)	12, 74, 237, 243, 262
HgaI	GACGC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HpaII	CCGG	5 cut(s)	12, 74, 237, 243, 262
HphI	GGTGA	1 cut(s)	108
Hpy166II	GTNNAC	2 cut(s)	103, 517
Hpy188I	TCNGA	2 cut(s)	483, 552
Hpy188III	TCNNGA	2 cut(s)	18, 79
Hpy8I	GTNNAC	2 cut(s)	103, 517
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	136, 301
HpyCH4III	ACNGT	4 cut(s)	61, 120, 376, 512
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	212, 502, 563, 586
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 350
HpyF3I	CTNAG	5 cut(s)	23, 380, 435, 549, 568
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	337
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	412, 490
LmnI	GCTCC	5 cut(s)	8, 143, 245, 298, 424
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	293, 354
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	2 cut(s)	414, 492
MbiI	CCGCTC	1 cut(s)	253
MboI	GATC	2 cut(s)	412, 490
MboII	GAAGA	4 cut(s)	55, 100, 103, 198
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	4 cut(s)	201, 440, 484, 524
MmeI	TCCRAC	1 cut(s)	171
MseI	TTAA	1 cut(s)	527
MspA1I	CMGCKG	2 cut(s)	69, 192
MspI	CCGG	5 cut(s)	12, 74, 237, 243, 262
MspR9I	CCNGG	5 cut(s)	13, 40, 74, 237, 521
MvaI	CCWGG	2 cut(s)	40, 521
MwoI	GCNNNNNNNGC	2 cut(s)	298, 350
NciI	CCSGG	3 cut(s)	13, 74, 237
NdeII	GATC	2 cut(s)	412, 490
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	6 cut(s)	10, 16, 101, 197, 241, 257
NmeAIII	GCCGAG	2 cut(s)	53, 256
NmuCI	GTSAC	1 cut(s)	506
PceI	AGGCCT	1 cut(s)	464
PkrI	GCNGC	6 cut(s)	71, 111, 191, 226, 229, 255
PmaCI	CACGTG	1 cut(s)	106
PmlI	CACGTG	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	527
Psp6I	CCWGG	2 cut(s)	38, 519
PspCI	CACGTG	1 cut(s)	106
PspGI	CCWGG	2 cut(s)	38, 519
PspN4I	GGNNCC	6 cut(s)	10, 16, 101, 197, 241, 257
PspPI	GGNCC	6 cut(s)	15, 47, 71, 100, 195, 255
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	527
SatI	GCNGC	6 cut(s)	70, 110, 190, 225, 228, 254
Sau3AI	GATC	2 cut(s)	412, 490
Sau96I	GGNCC	6 cut(s)	15, 47, 71, 100, 195, 255
ScrFI	CCNGG	5 cut(s)	13, 40, 74, 237, 521
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	3 cut(s)	15, 100, 195
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	4 cut(s)	201, 440, 484, 524
SseBI	AGGCCT	1 cut(s)	464
SspMI	CTAG	2 cut(s)	293, 354
StuI	AGGCCT	1 cut(s)	464
StyD4I	CCNGG	5 cut(s)	11, 38, 72, 235, 519
TaaI	ACNGT	4 cut(s)	61, 120, 376, 512
TaiI	ACGT	1 cut(s)	108
TasI	AATT	4 cut(s)	201, 440, 484, 524
TauI	GCSGC	5 cut(s)	72, 112, 192, 230, 256
Tru1I	TTAA	1 cut(s)	527
Tru9I	TTAA	1 cut(s)	527
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	2 cut(s)	545, 554
TspRI	CASTG	1 cut(s)	517
VpaK11BI	GGWCC	3 cut(s)	15, 100, 195
VspI	ATTAAT	1 cut(s)	527
XapI	RAATTY	1 cut(s)	484
XspI	CTAG	2 cut(s)	293, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.