Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010819

Physical Location & Seq

Genomic Coordinates Reverse (-)

16626736 .. 16629330

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23530.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAGGGAGCCGGGTCGAGATTGAGCCGCGCGTCGTCGAGGTACGGCCCAACAACCACCGTCTTCAGCGGCCCAGTCCGGAGGTGGAAGAAGAAGTGGGTCCACGTGCCTCCATCCCCTTCTTCCTTCCGCTCTCGCAACGCCCGAAACAACGACAGCAACTCCTCTCGCCTCATGCTTTGCCGCTGGACCCCAATTTCTGCCGCCGCTAACTCTGCTACCGGCTCCGGCGAGGAGCGGCCGCGCCGGAGGTTCCGCTACACCCCTGTTGCTGTGTTGGATGAGCAGAAGAAGATGGTTGAGAAAAAGATTGAGGACATGGAGGATGTGGAGAACACTAGTGAGGGAGAGGAATCTACAGTGCTGAGTGATAAGTTGTTTGGGAAGTCAAACACTGATCAAGTTAAGAAGCAAGAGACTGAGGCATTCGGTAAGGCCAGCTCACAGGCCGCAAGTATAAATAATCTGAATTTAGATCTGGGCTTGCAAGGTCACAGTGCCAGCCTGGAGTTGATGAACAAAATGAAAGGGGCTAAGACAAAGACTGCAAGCTCAGGTGGGTTTTGGTTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.09

Weight (kDa)

9.9

Isoelectric Point (pI)

63.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55210
fragaria_vesca	FvH4_3g23530 FvH4_3g23530 FvH4_3g23530
malus_domestica	MD03G1193400.v1.1 MD11G1209600.v1.1
prunus_persica	Prupe.4G223100_v2.0.a1
pyrus_communis	pycom11g18510
rosa_chinensis	RchiOBHm_Chr5g0041531
rosa_laevigata	RLG00000034076
rosa_multiflora	Rmu_co8457507.1_g000001 Rmu_sc0014067.1_g000008 Rmu_sc0021997.1_g000002 Rmu_sc0029151.1_g000002
rosa_roxburghii	Rroxscaffold_1G00039000
rosa_rugosa	Rorug05G0193400
rosa_samantha	Rh5AG278900 Rh5BG283300 Rh5CG316200
rosa_wichuraiana	Rw5G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	132, 238
AccII	CGCG	3 cut(s)	30, 32, 244
AccIII	TCCGGA	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	49
AcvI	CACGTG	1 cut(s)	106
AfaI	GTAC	1 cut(s)	44
AhlI	ACTAGT	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	2 cut(s)	441, 552
AluI	AGCT	2 cut(s)	441, 552
Alw26I	GTCTC	1 cut(s)	410
Aor13HI	TCCGGA	1 cut(s)	78
AoxI	GGCC	5 cut(s)	46, 70, 239, 435, 447
ApoI	RAATTY	1 cut(s)	469
AspLEI	GCGC	2 cut(s)	32, 246
AspS9I	GGNCC	4 cut(s)	47, 71, 100, 189
AsuC2I	CCSGG	1 cut(s)	13
AvaII	GGWCC	2 cut(s)	100, 189
BbrPI	CACGTG	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	55
BccI	CCATC	2 cut(s)	121, 289
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	506
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	410
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	357
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	8 cut(s)	28, 70, 184, 204, 207, 239, 242, 450
BlsI	GCNGC	8 cut(s)	29, 71, 185, 205, 208, 240, 243, 451
Bme1390I	CCNGG	2 cut(s)	13, 506
Bme18I	GGWCC	2 cut(s)	100, 189
BmgT120I	GGNCC	4 cut(s)	47, 71, 100, 189
BmiI	GGNNCC	5 cut(s)	10, 101, 191, 226, 254
BmrFI	CCNGG	2 cut(s)	13, 506
BmrI	ACTGGG	1 cut(s)	68
BmuI	ACTGGG	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	553
BpuMI	CCSGG	1 cut(s)	13
BsaAI	YACGTR	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	74
BseAI	TCCGGA	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	506
BseGI	GGATG	3 cut(s)	113, 286, 331
BseMII	CTCAG	3 cut(s)	356, 411, 567
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	2 cut(s)	154, 248
BseX3I	CGGCCG	1 cut(s)	239
Bsh1236I	CGCG	3 cut(s)	30, 32, 244
Bsh1285I	CGRYCG	1 cut(s)	242
BshFI	GGCC	5 cut(s)	48, 72, 241, 437, 449
BsiEI	CGRYCG	1 cut(s)	242
BsiSI	CCGG	5 cut(s)	12, 79, 222, 228, 247
BsmAI	GTCTC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	5 cut(s)	48, 72, 241, 437, 449
Bsp13I	TCCGGA	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	397, 475
BspANI	GGCC	5 cut(s)	48, 72, 241, 437, 449
BspCNI	CTCAG	3 cut(s)	357, 412, 566
BspEI	TCCGGA	1 cut(s)	78
BspFNI	CGCG	3 cut(s)	30, 32, 244
BspLI	GGNNCC	5 cut(s)	10, 101, 191, 226, 254
BsrBI	CCGCTC	2 cut(s)	132, 238
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	221
BssMI	GATC	2 cut(s)	397, 475
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	3 cut(s)	61, 361, 497
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	4 cut(s)	439, 485, 502, 550
BstDEI	CTNAG	4 cut(s)	365, 420, 534, 553
BstF5I	GGATG	3 cut(s)	113, 286, 331
BstFNI	CGCG	3 cut(s)	30, 32, 244
BstHHI	GCGC	2 cut(s)	32, 246
BstKTI	GATC	2 cut(s)	400, 478
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	2 cut(s)	397, 475
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	506
BstSCI	CCNGG	2 cut(s)	11, 504
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	3 cut(s)	30, 32, 244
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BstZI	CGGCCG	1 cut(s)	239
BsuRI	GGCC	5 cut(s)	48, 72, 241, 437, 449
BtsCI	GGATG	3 cut(s)	113, 286, 331
BtsIMutI	CAGTG	3 cut(s)	366, 393, 502
Cac8I	GCNNGC	4 cut(s)	439, 485, 502, 550
CciNI	GCGGCCGC	1 cut(s)	239
CfoI	GCGC	2 cut(s)	32, 246
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	4 cut(s)	47, 71, 100, 189
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	2 cut(s)	175, 319
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	4 cut(s)	365, 420, 534, 553
DpnI	GATC	2 cut(s)	399, 477
DpnII	GATC	2 cut(s)	397, 475
EaeI	YGGCCR	1 cut(s)	239
EagI	CGGCCG	1 cut(s)	239
EclXI	CGGCCG	1 cut(s)	239
Eco47I	GGWCC	2 cut(s)	100, 189
Eco52I	CGGCCG	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	504
FaeI	CATG	2 cut(s)	178, 322
FaiI	YATR	3 cut(s)	176, 320, 458
FatI	CATG	2 cut(s)	174, 318
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	8 cut(s)	28, 70, 184, 204, 207, 239, 242, 450
FokI	GGATG	3 cut(s)	100, 293, 338
Fsp4HI	GCNGC	8 cut(s)	28, 70, 184, 204, 207, 239, 242, 450
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	2 cut(s)	31, 245
GluI	GCNGC	8 cut(s)	28, 70, 184, 204, 207, 239, 242, 450
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	5 cut(s)	48, 72, 241, 437, 449
HapII	CCGG	5 cut(s)	12, 79, 222, 228, 247
HgaI	GACGC	1 cut(s)	21
HhaI	GCGC	2 cut(s)	32, 246
Hin1II	CATG	2 cut(s)	178, 322
Hin6I	GCGC	2 cut(s)	30, 244
HinP1I	GCGC	2 cut(s)	30, 244
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	5 cut(s)	12, 79, 222, 228, 247
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	468
Hpy188III	TCNNGA	2 cut(s)	18, 79
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	2 cut(s)	37, 40
HpyAV	CCTTC	2 cut(s)	129, 136
HpyCH4III	ACNGT	3 cut(s)	61, 361, 497
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	487, 548, 571
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	4 cut(s)	365, 420, 534, 553
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	178, 322
HspAI	GCGC	2 cut(s)	30, 244
Kpn2I	TCCGGA	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	397, 475
LmnI	GCTCC	3 cut(s)	8, 230, 235
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	2 cut(s)	399, 477
MbiI	CCGCTC	2 cut(s)	132, 238
MboI	GATC	2 cut(s)	397, 475
MboII	GAAGA	6 cut(s)	55, 100, 103, 114, 301, 304
MflI	RGATCY	1 cut(s)	475
MluCI	AATT	2 cut(s)	195, 469
MmeI	TCCRAC	1 cut(s)	258
MroI	TCCGGA	1 cut(s)	78
MseI	TTAA	1 cut(s)	405
MspA1I	CMGCKG	2 cut(s)	69, 186
MspI	CCGG	5 cut(s)	12, 79, 222, 228, 247
MspR9I	CCNGG	2 cut(s)	13, 506
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	506
MvnI	CGCG	3 cut(s)	30, 32, 244
MwoI	GCNNNNNNNGC	1 cut(s)	215
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	2 cut(s)	397, 475
NlaIII	CATG	2 cut(s)	178, 322
NlaIV	GGNNCC	5 cut(s)	10, 101, 191, 226, 254
NmuCI	GTSAC	1 cut(s)	491
NotI	GCGGCCGC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	8 cut(s)	29, 71, 185, 205, 208, 240, 243, 451
PmaCI	CACGTG	1 cut(s)	106
PmlI	CACGTG	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	504
PspCI	CACGTG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	5 cut(s)	10, 101, 191, 226, 254
PspPI	GGNCC	4 cut(s)	47, 71, 100, 189
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	8 cut(s)	28, 70, 184, 204, 207, 239, 242, 450
Sau3AI	GATC	2 cut(s)	397, 475
Sau96I	GGNCC	4 cut(s)	47, 71, 100, 189
ScrFI	CCNGG	2 cut(s)	13, 506
SetI	ASST	8 cut(s)	44, 86, 108, 254, 443, 493, 554, 559
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	2 cut(s)	100, 189
SpeI	ACTAGT	1 cut(s)	338
Sse9I	AATT	2 cut(s)	195, 469
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	11, 504
TaaI	ACNGT	3 cut(s)	61, 361, 497
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	17, 38
TasI	AATT	2 cut(s)	195, 469
TauI	GCSGC	8 cut(s)	30, 72, 186, 206, 209, 241, 244, 452
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	3 cut(s)	366, 400, 502
TseFI	GTSAC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	530, 539
TspRI	CASTG	3 cut(s)	366, 400, 502
VpaK11BI	GGWCC	2 cut(s)	100, 189
XapI	RAATTY	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	81
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.