AT5G55580
ERF Family

mitochondrial transcription termination factor family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
22515391 .. 22517964
2574 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55580.1

Sequence Viewer

Length: 1491 bp
ATGGCGGGTTTCTCACTGTACTGTTTTAAAAACCCTCGAATTCTCTTTACTCTTCCGTCGGAATCACCTCTCTTTGTTTTGGGTTCTGATAAATGTTCACCGGCGACGAGACGGCCGAGTAGAAAGACTCGTGGGTTTGTCGTGACGTACGCGCACTCTAATCCGAAGATAATCAATCCGAAGAAGAAGTCGAGGTATGGGCAAACGTTATCTCCATATGACAGTGATGAAGATGATGATGATGATGATGATGATGATGATGATGACTGGTTACTTAATGATGATTTCGCTGAGGTTACAGAGTATGAGAAGAAGAAGCCTAAGTCACATAAGCAAACCATTGCTAAGAAAAGTGTGAAGAAAGGGATTGTCAAGCCTGAAGAAAGTGAGACTGATGAAGATGATCTTGATTTAGGCATTAGTCCTAATGCCACTTCTGAGAAGAAGAAGGAGTCTTGGCGTTTAGATGGTCGAGGAAAGATGAGTTCGAGGAAGTATGTGGAGAAACTATACCCTCGGCTCGCAGAAGAGATTGATATAGATCCGAAATGTGTACCACTTCTGGATTACTTAAGCACATTTGGTTTGAAAGAGTCACACTTTGTTCAAATGTACGAGAGACACATGCCATCCCTTCAGATTAATGTGTTCTCAGCTCAAGAGAGACTCGATTACTTGTTGAGTGTCGGTGTTAAACACAGAGATATCAAGAGAATGCTCTTGAGACAACCACAGATACTTCAATACACTGTTGAGAACAATCTCAAAGCTCACATTTCCTTTCTAATGGGTCTTGGCATTCCTAATTCCAAAATAGGACAGATTGTTGCTGCTACCCCTTCTCTCTTCTCTTACAGTGTAGAGAATTCATTGAGACCTACGATAAGGTATCTGATCGAAGAGGTTGGGATAAAGGAAACCGATGTTGGAAAGGTTGTGCAACTTAGCCCTCAGATTCTGGTTCAGCGGCTCGACATAACATGGAACACTCGCTACATGTTCCTCTCCAAGGAGTTAGGAGCACCTAGAGACAGCGTAGTGAAGATGGTAAAGAAGCATCCGCAGCTTCTTCACTACAGTATCGATGACGGGTTCTTGCCTCGAATCAATTTCCTTAGGAGCATTGGGATGTGCAATTCTGATATACTGAAAGTCTTGACTAGCCTTACACAGGTTTTGTCTCTTTCACTAGAAGATAATCTAAAACCTAAGTACATGTATTTGGTCAATGAGCTCAATAATGAAGTTCACATTCTGACCAAATACCCAATGTACTTGAGCTTGTCCTTGGATCAAAGGATACGTCCGCGCCACCGCTTCTTGGTTGAGTTAAAGAAAGTGCGGAAAGGGCCATTCCCTCTTAGTTCATTAGTTCCAAATGATGAAAGCTTTTGTCAGCAATGGGCTGGAACCAGTGTAGATACGTATCTCGCCTTTCGCCAGAGGCTGTTACTCAAGGAGTTTGCAAACAAGTATGACAAGAGAGGATGA

Protein Analysis

496

Amino Acids

57.2

Weight (kDa)

8.89

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 169 - 464 3e-45 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 152, 1309
AciI CCGC 6 cut(s) 5, 967, 1061, 1307, 1315, 1342
AclI AACGTT 1 cut(s) 206
AclWI GGATC 2 cut(s) 536, 1299
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 2 cut(s) 39, 865
AcuI CTGAAG 2 cut(s) 399, 620
AfaI GTAC 6 cut(s) 20, 149, 555, 614, 1214, 1274
AfiI CCNNNNNNNGG 3 cut(s) 1009, 1171, 1321
AflII CTTAAG 1 cut(s) 571
AflIII ACRYGT 2 cut(s) 996, 1215
AgsI TTSAA 3 cut(s) 589, 608, 743
AjuI GAANNNNNNNTTGG 2 cut(s) 909, 941
AluBI AGCT 6 cut(s) 656, 770, 1066, 1234, 1281, 1389
AluI AGCT 6 cut(s) 656, 770, 1066, 1234, 1281, 1389
Alw21I GWGCWC 2 cut(s) 1024, 1236
Alw26I GTCTC 8 cut(s) 103, 383, 613, 658, 718, 868, 1023, 1185
AlwI GGATC 2 cut(s) 536, 1299
AlwNI CAGNNNCTG 2 cut(s) 958, 1447
AoxI GGCC 2 cut(s) 113, 1349
ApeKI GCWGC 2 cut(s) 830, 1063
ApoI RAATTY 2 cut(s) 39, 865
ArsI GACNNNNNNTTYG 4 cut(s) 173, 205, 1288, 1320
AseI ATTAAT 1 cut(s) 642
AspLEI GCGC 2 cut(s) 154, 1311
AspS9I GGNCC 1 cut(s) 1349
AsuHPI GGTGA 2 cut(s) 57, 90
AxyI CCTNAGG 1 cut(s) 1115
BaeI ACNNNNGTAYC 2 cut(s) 1063, 1096
BanII GRGCYC 1 cut(s) 1236
BauI CACGAG 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 1024, 1236
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 817, 1075
BccI CCATC 3 cut(s) 461, 637, 1039
BceAI ACGGC 1 cut(s) 128
BciVI GTATCC 1 cut(s) 1293
BcoDI GTCTC 8 cut(s) 103, 383, 613, 658, 718, 868, 1023, 1185
BfaI CTAG 3 cut(s) 1026, 1161, 1190
BfmI CTRYAG 1 cut(s) 1075
BfrI CTTAAG 1 cut(s) 571
BfuI GTATCC 1 cut(s) 1293
BisI GCNGC 3 cut(s) 831, 968, 1064
BlsI GCNGC 3 cut(s) 832, 969, 1065
BmgT120I GGNCC 1 cut(s) 1349
BmiI GGNNCC 1 cut(s) 1411
BmsI GCATC 1 cut(s) 1066
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 4 cut(s) 642, 742, 1297, 1439
Bsa29I ATCGAT 1 cut(s) 1083
BsaAI YACGTR 1 cut(s) 1425
BsaBI GATNNNNATC 2 cut(s) 540, 1425
BsaI GGTCTC 1 cut(s) 868
BsaJI CCNNGG 3 cut(s) 515, 1008, 1287
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 3 cut(s) 1009, 1171, 1321
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 272, 1413
Bse21I CCTNAGG 1 cut(s) 1115
Bse3DI GCAATG 2 cut(s) 339, 1406
Bse8I GATNNNNATC 2 cut(s) 540, 1425
BseCI ATCGAT 1 cut(s) 1083
BseDI CCNNGG 3 cut(s) 515, 1008, 1287
BseGI GGATG 3 cut(s) 629, 1057, 1134
BseJI GATNNNNATC 2 cut(s) 540, 1425
BseLI CCNNNNNNNGG 3 cut(s) 1009, 1171, 1321
BseMI GCAATG 2 cut(s) 339, 1406
BseMII CTCAG 4 cut(s) 282, 429, 666, 965
BseNI ACTGG 2 cut(s) 272, 1413
BseX3I CGGCCG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 817, 1075
Bsh1236I CGCG 2 cut(s) 152, 1309
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 2 cut(s) 115, 1351
BshVI ATCGAT 1 cut(s) 1083
BsiEI CGRYCG 1 cut(s) 116
BsiHKAI GWGCWC 2 cut(s) 1024, 1236
BsiSI CCGG 1 cut(s) 101
BsiWI CGTACG 1 cut(s) 147
BslI CCNNNNNNNGG 3 cut(s) 1009, 1171, 1321
BsmAI GTCTC 8 cut(s) 103, 383, 613, 658, 718, 868, 1023, 1185
BsmBI CGTCTC 1 cut(s) 103
BsmI GAATGC 2 cut(s) 720, 798
BsnI GGCC 2 cut(s) 115, 1351
Bso31I GGTCTC 1 cut(s) 868
Bsp1286I GDGCHC 2 cut(s) 1024, 1236
Bsp143I GATC 4 cut(s) 403, 541, 894, 1291
BspACI CCGC 6 cut(s) 5, 967, 1061, 1307, 1315, 1342
BspANI GGCC 2 cut(s) 115, 1351
BspCNI CTCAG 4 cut(s) 283, 430, 665, 964
BspDI ATCGAT 1 cut(s) 1083
BspFNI CGCG 2 cut(s) 152, 1309
BspLI GGNNCC 1 cut(s) 1411
BspPI GGATC 2 cut(s) 536, 1299
BspTI CTTAAG 1 cut(s) 571
BspTNI GGTCTC 1 cut(s) 868
BsrDI GCAATG 2 cut(s) 339, 1406
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 2 cut(s) 272, 1413
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 3 cut(s) 515, 1008, 1287
BssMI GATC 4 cut(s) 403, 541, 894, 1291
BssSI CACGAG 1 cut(s) 129
BssT1I CCWWGG 2 cut(s) 1008, 1287
Bst2BI CACGAG 1 cut(s) 129
Bst4CI ACNGT 6 cut(s) 18, 23, 224, 751, 857, 1079
Bst6I CTCTTC 4 cut(s) 57, 522, 851, 894
BstAFI CTTAAG 1 cut(s) 571
BstBAI YACGTR 1 cut(s) 1425
BstC8I GCNNGC 1 cut(s) 522
BstENI CCTNNNNNAGG 2 cut(s) 1007, 1169
BstF5I GGATG 3 cut(s) 629, 1057, 1134
BstFNI CGCG 2 cut(s) 152, 1309
BstHHI GCGC 2 cut(s) 154, 1311
BstKTI GATC 4 cut(s) 406, 544, 897, 1294
BstMAI GTCTC 8 cut(s) 103, 383, 613, 658, 718, 868, 1023, 1185
BstMBI GATC 4 cut(s) 403, 541, 894, 1291
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 2 cut(s) 1063, 1348
BstNSI RCATGY 3 cut(s) 628, 1000, 1219
BstSFI CTRYAG 1 cut(s) 1075
BstSNI TACGTA 1 cut(s) 1425
BstUI CGCG 2 cut(s) 152, 1309
BstV1I GCAGC 2 cut(s) 817, 1075
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BstZI CGGCCG 1 cut(s) 113
Bsu15I ATCGAT 1 cut(s) 1083
Bsu36I CCTNAGG 1 cut(s) 1115
BsuI GTATCC 1 cut(s) 1293
BsuRI GGCC 2 cut(s) 115, 1351
BsuTUI ATCGAT 1 cut(s) 1083
BtsCI GGATG 3 cut(s) 629, 1057, 1134
BtsIMutI CAGTG 5 cut(s) 14, 229, 747, 862, 1420
Cac8I GCNNGC 1 cut(s) 522
CaiI CAGNNNCTG 2 cut(s) 958, 1447
CfoI GCGC 2 cut(s) 154, 1311
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 1349
ClaI ATCGAT 1 cut(s) 1083
Csp6I GTAC 6 cut(s) 19, 148, 554, 613, 1213, 1273
CviAII CATG 4 cut(s) 625, 981, 997, 1216
CviQI GTAC 6 cut(s) 19, 148, 554, 613, 1213, 1273
DpnI GATC 4 cut(s) 405, 543, 896, 1293
DpnII GATC 4 cut(s) 403, 541, 894, 1291
DraI TTTAAA 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 113
EagI CGGCCG 1 cut(s) 113
Eam1104I CTCTTC 4 cut(s) 57, 522, 851, 894
EarI CTCTTC 4 cut(s) 57, 522, 851, 894
Ecl136II GAGCTC 1 cut(s) 1234
EclXI CGGCCG 1 cut(s) 113
Eco105I TACGTA 1 cut(s) 1425
Eco130I CCWWGG 2 cut(s) 1008, 1287
Eco24I GRGCYC 1 cut(s) 1236
Eco31I GGTCTC 1 cut(s) 868
Eco32I GATATC 1 cut(s) 706
Eco52I CGGCCG 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 1234
Eco57I CTGAAG 2 cut(s) 399, 620
Eco81I CCTNAGG 1 cut(s) 1115
EcoICRI GAGCTC 1 cut(s) 1234
EcoNI CCTNNNNNAGG 2 cut(s) 1007, 1169
EcoRI GAATTC 2 cut(s) 39, 865
EcoRV GATATC 1 cut(s) 706
EcoT14I CCWWGG 2 cut(s) 1008, 1287
EcoT38I GRGCYC 1 cut(s) 1236
ErhI CCWWGG 2 cut(s) 1008, 1287
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 4 cut(s) 628, 984, 1000, 1219
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FatI CATG 4 cut(s) 624, 980, 996, 1215
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 3 cut(s) 831, 968, 1064
FokI GGATG 3 cut(s) 616, 1044, 1141
FriOI GRGCYC 1 cut(s) 1236
Fsp4HI GCNGC 3 cut(s) 831, 968, 1064
FspBI CTAG 3 cut(s) 1026, 1161, 1190
GlaI GCGC 2 cut(s) 153, 1310
GluI GCNGC 3 cut(s) 831, 968, 1064
HaeIII GGCC 2 cut(s) 115, 1351
HapII CCGG 1 cut(s) 101
HhaI GCGC 2 cut(s) 154, 1311
Hin1II CATG 4 cut(s) 628, 984, 1000, 1219
Hin6I GCGC 2 cut(s) 152, 1309
HinP1I GCGC 2 cut(s) 152, 1309
HindIII AAGCTT 1 cut(s) 1387
HinfI GANTC 7 cut(s) 62, 127, 452, 593, 666, 955, 1104
HpaII CCGG 1 cut(s) 101
HphI GGTGA 2 cut(s) 57, 90
Hpy166II GTNNAC 3 cut(s) 98, 554, 1249
Hpy188III TCNNGA 7 cut(s) 142, 407, 563, 659, 709, 721, 1156
Hpy8I GTNNAC 3 cut(s) 98, 554, 1249
Hpy99I CGWCG 2 cut(s) 61, 109
HpyAV CCTTC 3 cut(s) 442, 644, 849
HpyCH4III ACNGT 6 cut(s) 18, 23, 224, 751, 857, 1079
HpyCH4IV ACGT 4 cut(s) 146, 206, 1303, 1424
HpyCH4V TGCA 3 cut(s) 940, 1134, 1466
HpyF10VI GCNNNNNNNGC 2 cut(s) 1063, 1348
HpySE526I ACGT 4 cut(s) 146, 206, 1303, 1424
Hsp92II CATG 4 cut(s) 628, 984, 1000, 1219
HspAI GCGC 2 cut(s) 152, 1309
Kzo9I GATC 4 cut(s) 403, 541, 894, 1291
LmnI GCTCC 2 cut(s) 1019, 1119
LpnPI CCDG 9 cut(s) 114, 253, 390, 548, 944, 1157, 1392, 1426, 1454
Lsp1109I GCAGC 2 cut(s) 817, 1075
LweI GCATC 1 cut(s) 1066
MaeI CTAG 3 cut(s) 1026, 1161, 1190
MaeII ACGT 4 cut(s) 146, 206, 1303, 1424
MaeIII GTNAC 6 cut(s) 142, 270, 295, 324, 594, 1449
MalI GATC 4 cut(s) 405, 543, 896, 1293
MboI GATC 4 cut(s) 403, 541, 894, 1291
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 2 cut(s) 1024, 1236
MluCI AATT 5 cut(s) 39, 805, 865, 1108, 1135
MlyI GAGTC 4 cut(s) 121, 461, 602, 660
MmeI TCCRAC 2 cut(s) 39, 907
MseI TTAA 6 cut(s) 27, 276, 572, 642, 693, 1331
MslI CAYNNNNRTG 1 cut(s) 1127
MspA1I CMGCKG 1 cut(s) 967
MspCI CTTAAG 1 cut(s) 571
MspI CCGG 1 cut(s) 101
Mva1269I GAATGC 2 cut(s) 720, 798
MvnI CGCG 2 cut(s) 152, 1309
MwoI GCNNNNNNNGC 2 cut(s) 1063, 1348
NdeI CATATG 1 cut(s) 217
NdeII GATC 4 cut(s) 403, 541, 894, 1291
NlaIII CATG 4 cut(s) 628, 984, 1000, 1219
NlaIV GGNNCC 1 cut(s) 1411
NmeAIII GCCGAG 2 cut(s) 141, 496
NmuCI GTSAC 3 cut(s) 142, 324, 594
NspI RCATGY 3 cut(s) 628, 1000, 1219
PciI ACATGT 2 cut(s) 996, 1215
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PctI GAATGC 2 cut(s) 720, 798
PfeI GAWTC 3 cut(s) 62, 955, 1104
Pfl23II CGTACG 1 cut(s) 147
PkrI GCNGC 3 cut(s) 832, 969, 1065
PleI GAGTC 4 cut(s) 121, 460, 601, 660
PpsI GAGTC 4 cut(s) 121, 460, 601, 660
Ppu21I YACGTR 1 cut(s) 1425
PscI ACATGT 2 cut(s) 996, 1215
PshBI ATTAAT 1 cut(s) 642
Psp124BI GAGCTC 1 cut(s) 1236
Psp1406I AACGTT 1 cut(s) 206
PspLI CGTACG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 1411
PspPI GGNCC 1 cut(s) 1349
PsrI GAACNNNNNNTAC 2 cut(s) 977, 1009
PstNI CAGNNNCTG 2 cut(s) 958, 1447
PsuI RGATCY 1 cut(s) 541
RsaI GTAC 6 cut(s) 20, 149, 555, 614, 1214, 1274
RsaNI GTAC 6 cut(s) 19, 148, 554, 613, 1213, 1273
RseI CAYNNNNRTG 1 cut(s) 1127
SacI GAGCTC 1 cut(s) 1236
SaqAI TTAA 6 cut(s) 27, 276, 572, 642, 693, 1331
SatI GCNGC 3 cut(s) 831, 968, 1064
Sau3AI GATC 4 cut(s) 403, 541, 894, 1291
Sau96I GGNCC 1 cut(s) 1349
SchI GAGTC 4 cut(s) 121, 461, 602, 660
SduI GDGCHC 2 cut(s) 1024, 1236
SfaNI GCATC 1 cut(s) 1066
SfcI CTRYAG 1 cut(s) 1075
SgrAI CRCCGGYG 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 1127
SmlI CTYRAG 5 cut(s) 571, 657, 721, 1276, 1454
SmoI CTYRAG 5 cut(s) 571, 657, 721, 1276, 1454
SnaBI TACGTA 1 cut(s) 1425
Sse9I AATT 5 cut(s) 39, 805, 865, 1108, 1135
SsiI CCGC 6 cut(s) 5, 967, 1061, 1307, 1315, 1342
SspMI CTAG 3 cut(s) 1026, 1161, 1190
SstI GAGCTC 1 cut(s) 1236
StyI CCWWGG 2 cut(s) 1008, 1287
TaaI ACNGT 6 cut(s) 18, 23, 224, 751, 857, 1079
TaiI ACGT 4 cut(s) 149, 209, 1306, 1427
TaqI TCGA 9 cut(s) 37, 191, 472, 488, 669, 897, 972, 1083, 1102
TasI AATT 5 cut(s) 39, 805, 865, 1108, 1135
TatI WGTACW 3 cut(s) 18, 1212, 1272
TauI GCSGC 1 cut(s) 970
TfiI GAWTC 3 cut(s) 62, 955, 1104
Tru1I TTAA 6 cut(s) 27, 276, 572, 642, 693, 1331
Tru9I TTAA 6 cut(s) 27, 276, 572, 642, 693, 1331
TscAI CASTG 5 cut(s) 21, 229, 754, 862, 1420
TseFI GTSAC 3 cut(s) 142, 324, 594
TseI GCWGC 2 cut(s) 830, 1063
Tsp45I GTSAC 3 cut(s) 142, 324, 594
TspDTI ATGAA 6 cut(s) 243, 411, 858, 1257, 1356, 1398
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 5 cut(s) 21, 229, 754, 862, 1420
Vha464I CTTAAG 1 cut(s) 571
VspI ATTAAT 1 cut(s) 642
XagI CCTNNNNNAGG 2 cut(s) 1007, 1169
XapI RAATTY 2 cut(s) 39, 865
XceI RCATGY 3 cut(s) 628, 1000, 1219
XspI CTAG 3 cut(s) 1026, 1161, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.