Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004150

Physical Location & Seq

Genomic Coordinates Reverse (-)

20035322 .. 20036678

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGTATCTTTCTCTCTTTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTGTCTGAAACTCTTCTCTCACTCCCAGTTCACCATTACCACCCTCTCCAATCTCTCTGGGCACAAAAGAAGGTCCGATTCCAGCTGCCGCTTCGTGGTGCTCTCCGCCCACTCCAACCCCAAAATTCTCAAGTCCAACCGCCGCTCCCGCTATGGCCAGCCTCTCTCCCCCTACGACCAAGACGACGACGACGAGGTCTCTCGTGTTACTGACGTGTCTGACGACGATTGGTTGCTCAATGATGACTTTGCGGAAATTTCAGACTTTGATGTGAATAGAAAGAGGCCCAAATCCCACAAGGGATTTTCCAACGGTCATTTGGATGGCAGAAACAGCAAGCGCACTCTAGAGAAGAGTAGTAAGGAAGACTACTATCATAGTCCAAGCAAAACAAAGGAAGTCACTTCCGGGGATGTACCTCGCAAGGGAAAGCTATCAACAAGGAAGGCTATGGAGGATAGATTCCCTCGGCTGTCAGAAGATGTCGAATTGGATGAGAAATGGTTACCCCTTATTGATTATCTAAGCACATTTGGGCTAAGGGAATCACACTTTATTCAAATGTATGAGAGGCATATGCCTTCTCTTCAAATAAATGTGTGCTCAGCAAAGGAAAGGTTGGAATATTTGTTGAGTGTTGGTGTCAAACAGAGAGATGTAAGAAGAATGATTTTGAGGCAGCCACATCGATCCTTGAATATACCGTTGAGAACAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

256

Amino Acids

29.36

Weight (kDa)

9.28

Isoelectric Point (pI)

65.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55580 AT5G55580 AT5G55580
fragaria_vesca	FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060
malus_domestica	MD03G1188700.v1.1 MD11G1204700.v1.1
prunus_persica	Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1
pyrus_communis	pycom03g14160 pycom11g17740
rosa_chinensis	RchiOBHm_Chr5g0042641
rosa_laevigata	RLG00000034147
rosa_multiflora	Rmu_sc0004355.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038000
rosa_rugosa	Rorug05G0203500 Rorug05G0203500
rosa_samantha	Rh5AG288700 Rh5BG292800 Rh5CG325200 Rh5DG302700
rosa_wichuraiana	Rw5G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	192
AciI	CCGC	6 cut(s)	136, 153, 187, 190, 196, 299
AclWI	GGATC	1 cut(s)	732
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	171, 303
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	2 cut(s)	142, 473
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	3 cut(s)	608, 638, 745
AjiI	CACGTC	1 cut(s)	262
AluBI	AGCT	2 cut(s)	132, 481
AluI	AGCT	2 cut(s)	132, 481
Alw21I	GWGCWC	2 cut(s)	150, 653
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	732
AoxI	GGCC	2 cut(s)	202, 332
ApeKI	GCWGC	2 cut(s)	132, 727
ApoI	RAATTY	2 cut(s)	171, 303
Asp700I	GAANNNNTTC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	120, 333
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	111
BalI	TGGCCA	1 cut(s)	204
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	150, 653
BbvI	GCAGC	2 cut(s)	119, 739
BccI	CCATC	1 cut(s)	365
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	395
BisI	GCNGC	4 cut(s)	133, 136, 190, 728
BlpI	GCTNAGC	1 cut(s)	652
BlsI	GCNGC	4 cut(s)	134, 137, 191, 729
Bme1390I	CCNGG	1 cut(s)	457
Bme18I	GGWCC	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	120, 333
BmrFI	CCNGG	1 cut(s)	457
BmrI	ACTGGG	1 cut(s)	67
BmuI	ACTGGG	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	587
Bpu1102I	GCTNAGC	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	457
Bsa29I	ATCGAT	1 cut(s)	736
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	2 cut(s)	456, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 473
Bse1I	ACTGG	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	736
BseDI	CCNNGG	2 cut(s)	456, 515
BseGI	GGATG	3 cut(s)	376, 466, 547
BseLI	CCNNNNNNNGG	2 cut(s)	142, 473
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	5 cut(s)	13, 16, 19, 22, 25
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	119, 739
BshFI	GGCC	2 cut(s)	204, 334
BshVI	ATCGAT	1 cut(s)	736
BsiHKAI	GWGCWC	2 cut(s)	150, 653
BsiSI	CCGG	1 cut(s)	456
BslI	CCNNNNNNNGG	2 cut(s)	142, 473
BsmAI	GTCTC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	204, 334
Bso31I	GGTCTC	1 cut(s)	250
Bsp1286I	GDGCHC	3 cut(s)	111, 150, 653
Bsp143I	GATC	1 cut(s)	737
Bsp1720I	GCTNAGC	1 cut(s)	652
BspACI	CCGC	6 cut(s)	136, 153, 187, 190, 196, 299
BspANI	GGCC	2 cut(s)	204, 334
BspCNI	CTCAG	1 cut(s)	665
BspDI	ATCGAT	1 cut(s)	736
BspPI	GGATC	1 cut(s)	732
BspTNI	GGTCTC	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	456, 515
BssMI	GATC	1 cut(s)	737
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	362, 753
Bst6I	CTCTTC	4 cut(s)	43, 65, 395, 639
BstC8I	GCNNGC	2 cut(s)	206, 386
BstDEI	CTNAG	3 cut(s)	572, 587, 652
BstEII	GGTNACC	1 cut(s)	552
BstF5I	GGATG	3 cut(s)	376, 466, 547
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	1 cut(s)	740
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	737
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 381
BstPI	GGTNACC	1 cut(s)	552
BstSCI	CCNGG	1 cut(s)	455
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	119, 739
BstV2I	GAAGAC	1 cut(s)	420
Bsu15I	ATCGAT	1 cut(s)	736
BsuRI	GGCC	2 cut(s)	204, 334
BsuTUI	ATCGAT	1 cut(s)	736
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	376, 466, 547
Cac8I	GCNNGC	2 cut(s)	206, 386
CfoI	GCGC	1 cut(s)	390
Cfr13I	GGNCC	2 cut(s)	120, 333
ClaI	ATCGAT	1 cut(s)	736
Csp6I	GTAC	1 cut(s)	464
CviJI	RGCY	9 cut(s)	132, 204, 208, 334, 481, 497, 520, 586, 730
CviKI_1	RGCY	9 cut(s)	132, 204, 208, 334, 481, 497, 520, 586, 730
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	3 cut(s)	572, 587, 652
DpnI	GATC	1 cut(s)	739
DpnII	GATC	1 cut(s)	737
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	4 cut(s)	43, 65, 395, 639
EarI	CTCTTC	4 cut(s)	43, 65, 395, 639
EciI	GGCGGA	1 cut(s)	142
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	552
EcoO65I	GGTNACC	1 cut(s)	552
FaiI	YATR	7 cut(s)	201, 426, 500, 615, 624, 626, 749
FauI	CCCGC	1 cut(s)	203
FauNDI	CATATG	1 cut(s)	624
Fnu4HI	GCNGC	4 cut(s)	133, 136, 190, 728
FokI	GGATG	3 cut(s)	383, 473, 554
Fsp4HI	GCNGC	4 cut(s)	133, 136, 190, 728
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	4 cut(s)	133, 136, 190, 728
HaeIII	GGCC	2 cut(s)	204, 334
HapII	CCGG	1 cut(s)	456
HhaI	GCGC	1 cut(s)	390
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HinfI	GANTC	3 cut(s)	125, 510, 593
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	5 cut(s)	54, 124, 268, 310, 526
Hpy188III	TCNNGA	1 cut(s)	395
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	4 cut(s)	236, 239, 242, 275
HpyAV	CCTTC	3 cut(s)	111, 487, 639
HpyCH4III	ACNGT	2 cut(s)	362, 753
HpyCH4IV	ACGT	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 381
HpyF3I	CTNAG	3 cut(s)	572, 587, 652
HpySE526I	ACGT	1 cut(s)	261
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	737
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	5 cut(s)	86, 90, 142, 218, 469
Lsp1109I	GCAGC	2 cut(s)	119, 739
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	3 cut(s)	253, 448, 552
MalI	GATC	1 cut(s)	739
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	1 cut(s)	737
MboII	GAAGA	9 cut(s)	30, 33, 36, 52, 412, 425, 539, 626, 723
MhlI	GDGCHC	3 cut(s)	111, 150, 653
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	4 cut(s)	171, 303, 536, 762
MluNI	TGGCCA	1 cut(s)	204
MmeI	TCCRAC	4 cut(s)	186, 207, 381, 648
Mox20I	TGGCCA	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	2 cut(s)	195, 381
NciI	CCSGG	1 cut(s)	457
NdeI	CATATG	1 cut(s)	624
NdeII	GATC	1 cut(s)	737
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	3 cut(s)	228, 237, 267
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	125, 510, 593
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	134, 137, 191, 729
PspEI	GGTNACC	1 cut(s)	552
PspPI	GGNCC	2 cut(s)	120, 333
PsyI	GACNNNGTC	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	132
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
RseI	CAYNNNNRTG	1 cut(s)	369
SatI	GCNGC	4 cut(s)	133, 136, 190, 728
Sau3AI	GATC	1 cut(s)	737
Sau96I	GGNCC	2 cut(s)	120, 333
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	3 cut(s)	111, 150, 653
SetI	ASST	7 cut(s)	122, 134, 246, 264, 469, 483, 668
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	4 cut(s)	171, 303, 536, 762
SsiI	CCGC	6 cut(s)	136, 153, 187, 190, 196, 299
SspI	AATATT	1 cut(s)	674
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	455
TaaI	ACNGT	2 cut(s)	362, 753
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	534, 736
TasI	AATT	4 cut(s)	171, 303, 536, 762
TauI	GCSGC	2 cut(s)	138, 192
TfiI	GAWTC	3 cut(s)	125, 510, 593
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	2 cut(s)	132, 727
Tsp45I	GTSAC	1 cut(s)	448
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	2 cut(s)	171, 303
XbaI	TCTAGA	1 cut(s)	394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.