Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004150

Physical Location & Seq

Genomic Coordinates Forward (+)

36000663 .. 36004155

Gene Structure 3493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG325200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGTCCCTTTCTCTCTCTGCCCCTCTCACCCCTCCTCTTCTCTCAAACTCTACCTCTCCCAGTTCACCCTCACCCCTCTCTCAGACCTCTCCGGCAGTAAACGACGAGCCAGTTCTTGCCGTTTTGTAGCGCTCTCTACCCACTCCAACCCCAAAATTCTCAAGTCCAACCGCAGGTCCCGCTACGGCCAGCCTCTCTCCCCCTACGACGACCAGGAAGACGACGTCGAGGCTTACCATTTTGCTGACGTGTCCGACGATGATTGGCTGCTCAATGATGACTTTGCGGAGGTTTCAGTATTCGATGTTAATGGGAAGAAGTCGAAACCACACAAGGGCCATGCCAATGGCCATTTGAATGGCGAAAATGCAAAGAGTGTTGCTGAGAAGAGTTTCATAGGAAACTATGATCATGGTTCGAAGAAAGCAAGGCAAGCTTCCTTGGATGTGGCTCGCAACGGAAAGCGCGCTACAAGGAAGAATATGGAGGTTAGGTTCCCTCGGCTATCAGAGGAAATTGGTATGGATGTGAAGTGGTTACCCCTTATTGATTATCTAAGCACATTTGGGTTTAAGGAATCACACTTTATTCAAATGTATGAGAGGCATATGCCTTCTCTTCAAATAAATGTGTGCTCTGCTCAAGAAAGGTTGGAATATTTGTTGAGTGTTGGTGTCAAGCAGAGAGATATAAGAAGAATGGTTTTGAGGCAGCCACAAATTCTAGAATATACAGTTGAGAACAATTTGAAGTCCCATGTTGCTTTCCTGATGAACTTGGGTATTCCAAGTTCGAGAATTGGGCAGATTATTGCTGCTACTCCTTCTCTCTTTTCTTATAGTGTTGAGAATTCGCTGAAACCTACTGTAAGGTACTTGGTTGAAGAGGTAGGGATTAAGGAAAAAGATGTAGGCAAAGTGGTGCAGTTAAGCCCTCAAATTCTGGTCCAGCGAATTGATATATCCTGGAATTCTCGTTGTAGTTTTCTTTCAAATGAGATAGGAGCACCCAGAGAAAGTATTGTGAAGATGGTTAAAAAGCATCCTCAGTTCCTTCATTATAGTATTGATGATGGACTACTGCCTAGGATTAATTTCCTTAGGAGCATTGGGATGTGTAATTCTGACATCTTGAAACTTTTAACTAGTCTCACACAGGTATGTTACTTTCTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

392

Amino Acids

44.46

Weight (kDa)

9.12

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	183 - 259	2.6e-09	mTERF
mTERF	PF02536	255 - 387	3.2e-21	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55580 AT5G55580 AT5G55580
fragaria_vesca	FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060
malus_domestica	MD03G1188700.v1.1 MD11G1204700.v1.1
prunus_persica	Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1
pyrus_communis	pycom03g14160 pycom11g17740
rosa_chinensis	RchiOBHm_Chr5g0042641
rosa_laevigata	RLG00000034147
rosa_multiflora	Rmu_sc0004355.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038000
rosa_rugosa	Rorug05G0203500 Rorug05G0203500
rosa_samantha	Rh5AG288700 Rh5BG292800 Rh5CG325200 Rh5DG302700
rosa_wichuraiana	Rw5G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	228
Acc36I	ACCTGC	1 cut(s)	165
AccII	CGCG	1 cut(s)	468
AciI	CCGC	3 cut(s)	172, 181, 287
AcoI	YGGCCR	2 cut(s)	187, 349
AcsI	RAATTY	5 cut(s)	156, 720, 850, 939, 970
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	1 cut(s)	875
AfeI	AGCGCT	1 cut(s)	132
AfiI	CCNNNNNNNGG	2 cut(s)	174, 335
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	7 cut(s)	358, 593, 623, 751, 884, 993, 1135
AhlI	ACTAGT	1 cut(s)	1145
AjiI	CACGTC	1 cut(s)	250
AjnI	CCWGG	2 cut(s)	213, 965
AloI	GAACNNNNNNTCC	2 cut(s)	479, 511
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
Alw21I	GWGCWC	2 cut(s)	638, 1009
Alw26I	GTCTC	1 cut(s)	1154
Aor51HI	AGCGCT	1 cut(s)	132
AoxI	GGCC	3 cut(s)	187, 337, 349
ApeKI	GCWGC	3 cut(s)	268, 712, 815
ApoI	RAATTY	5 cut(s)	156, 720, 850, 939, 970
AseI	ATTAAT	1 cut(s)	1092
Asp700I	GAANNNNTTC	1 cut(s)	392
AspA2I	CCTAGG	1 cut(s)	1085
AspLEI	GCGC	3 cut(s)	133, 468, 470
AspS9I	GGNCC	4 cut(s)	4, 177, 337, 946
AsuHPI	GGTGA	3 cut(s)	20, 58, 64
AsuII	TTCGAA	1 cut(s)	419
AvaII	GGWCC	3 cut(s)	4, 177, 946
AvrII	CCTAGG	1 cut(s)	1085
AxyI	CCTNAGG	1 cut(s)	1100
BalI	TGGCCA	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	638, 1009
BbvI	GCAGC	3 cut(s)	255, 724, 802
BccI	CCATC	2 cut(s)	1024, 1067
BceAI	ACGGC	2 cut(s)	105, 202
BciT130I	CCWGG	2 cut(s)	215, 967
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	1154
BcuI	ACTAGT	1 cut(s)	1145
BfaI	CTAG	3 cut(s)	725, 1086, 1146
BfoI	RGCGCY	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	165
BisI	GCNGC	3 cut(s)	269, 713, 816
BlnI	CCTAGG	1 cut(s)	1085
BlsI	GCNGC	3 cut(s)	270, 714, 817
Bme1390I	CCNGG	2 cut(s)	215, 967
Bme18I	GGWCC	3 cut(s)	4, 177, 946
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	4 cut(s)	4, 177, 337, 946
BmiI	GGNNCC	3 cut(s)	6, 179, 497
BmrFI	CCNGG	2 cut(s)	215, 967
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	1051
BmuI	ACTGGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	419
BpuEI	CTTGAG	2 cut(s)	146, 627
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	441, 500, 1085
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 335
Bse1I	ACTGG	2 cut(s)	61, 111
Bse21I	CCTNAGG	1 cut(s)	1100
BseBI	CCWGG	2 cut(s)	215, 967
BseDI	CCNNGG	3 cut(s)	441, 500, 1085
BseGI	GGATG	4 cut(s)	451, 532, 1042, 1119
BseLI	CCNNNNNNNGG	2 cut(s)	174, 335
BseMII	CTCAG	3 cut(s)	96, 375, 1061
BseNI	ACTGG	2 cut(s)	61, 111
BsePI	GCGCGC	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	255, 724, 802
BsgI	GTGCAG	1 cut(s)	944
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	3 cut(s)	189, 339, 351
BsiHKAI	GWGCWC	2 cut(s)	638, 1009
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	163, 739
BslI	CCNNNNNNNGG	2 cut(s)	174, 335
BsmAI	GTCTC	1 cut(s)	1154
BsmFI	GGGAC	2 cut(s)	163, 739
BsnI	GGCC	3 cut(s)	189, 339, 351
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	638, 1009
Bsp143I	GATC	1 cut(s)	409
BspACI	CCGC	3 cut(s)	172, 181, 287
BspANI	GGCC	3 cut(s)	189, 339, 351
BspCNI	CTCAG	3 cut(s)	95, 376, 1060
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	3 cut(s)	6, 179, 497
BspMI	ACCTGC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	419
BsrI	ACTGG	2 cut(s)	61, 111
BssECI	CCNNGG	3 cut(s)	441, 500, 1085
BssHII	GCGCGC	1 cut(s)	466
BssMI	GATC	1 cut(s)	409
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	441, 1085
Bst2UI	CCWGG	2 cut(s)	215, 967
Bst4CI	ACNGT	2 cut(s)	736, 868
Bst6I	CTCTTC	4 cut(s)	43, 383, 624, 879
BstACI	GRCGYC	1 cut(s)	225
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	4 cut(s)	191, 435, 454, 468
BstDEI	CTNAG	5 cut(s)	82, 384, 557, 1047, 1100
BstEII	GGTNACC	1 cut(s)	537
BstF5I	GGATG	4 cut(s)	451, 532, 1042, 1119
BstFNI	CGCG	1 cut(s)	468
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	3 cut(s)	133, 468, 470
BstKTI	GATC	1 cut(s)	412
BstMAI	GTCTC	1 cut(s)	1154
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 434
BstNI	CCWGG	2 cut(s)	215, 967
BstPI	GGTNACC	1 cut(s)	537
BstSCI	CCNGG	2 cut(s)	213, 965
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	3 cut(s)	255, 724, 802
BstV2I	GAAGAC	1 cut(s)	225
BstXI	CCANNNNNNTGG	2 cut(s)	347, 359
Bsu36I	CCTNAGG	1 cut(s)	1100
BsuRI	GGCC	3 cut(s)	189, 339, 351
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	4 cut(s)	451, 532, 1042, 1119
BveI	ACCTGC	1 cut(s)	165
Cac8I	GCNNGC	4 cut(s)	191, 435, 454, 468
CfoI	GCGC	3 cut(s)	133, 468, 470
Cfr13I	GGNCC	4 cut(s)	4, 177, 337, 946
Csp6I	GTAC	1 cut(s)	874
CviAII	CATG	4 cut(s)	341, 413, 758, 1176
CviQI	GTAC	1 cut(s)	874
DdeI	CTNAG	5 cut(s)	82, 384, 557, 1047, 1100
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
EaeI	YGGCCR	2 cut(s)	187, 349
Eam1104I	CTCTTC	4 cut(s)	43, 383, 624, 879
EarI	CTCTTC	4 cut(s)	43, 383, 624, 879
Eco130I	CCWWGG	2 cut(s)	441, 1085
Eco47I	GGWCC	3 cut(s)	4, 177, 946
Eco47III	AGCGCT	1 cut(s)	132
Eco81I	CCTNAGG	1 cut(s)	1100
Eco91I	GGTNACC	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	537
EcoRI	GAATTC	2 cut(s)	850, 970
EcoRII	CCWGG	2 cut(s)	213, 965
EcoT14I	CCWWGG	2 cut(s)	441, 1085
ErhI	CCWWGG	2 cut(s)	441, 1085
FaeI	CATG	4 cut(s)	344, 416, 761, 1179
FalI	AAGNNNNNCTT	2 cut(s)	421, 453
FaqI	GGGAC	2 cut(s)	163, 739
FatI	CATG	4 cut(s)	340, 412, 757, 1175
FauI	CCCGC	1 cut(s)	188
FauNDI	CATATG	1 cut(s)	609
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	269, 713, 816
FokI	GGATG	4 cut(s)	458, 539, 1029, 1126
Fsp4HI	GCNGC	3 cut(s)	269, 713, 816
FspBI	CTAG	3 cut(s)	725, 1086, 1146
GlaI	GCGC	3 cut(s)	132, 467, 469
GluI	GCNGC	3 cut(s)	269, 713, 816
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	3 cut(s)	189, 339, 351
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	3 cut(s)	133, 468, 470
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	4 cut(s)	344, 416, 761, 1179
Hin6I	GCGC	3 cut(s)	131, 466, 468
HinP1I	GCGC	3 cut(s)	131, 466, 468
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	20, 58, 64
Hpy166II	GTNNAC	2 cut(s)	66, 101
Hpy188I	TCNGA	4 cut(s)	85, 256, 511, 1126
Hpy188III	TCNNGA	5 cut(s)	644, 725, 769, 795, 1132
Hpy8I	GTNNAC	2 cut(s)	66, 101
Hpy99I	CGWCG	5 cut(s)	108, 212, 227, 230, 260
HpyAV	CCTTC	3 cut(s)	624, 834, 1064
HpyCH4III	ACNGT	2 cut(s)	736, 868
HpyCH4IV	ACGT	2 cut(s)	225, 249
HpyCH4V	TGCA	3 cut(s)	371, 925, 1175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 434
HpyF3I	CTNAG	5 cut(s)	82, 384, 557, 1047, 1100
HpySE526I	ACGT	2 cut(s)	225, 249
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	344, 416, 761, 1179
HspAI	GCGC	3 cut(s)	131, 466, 468
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	2 cut(s)	1004, 1104
Lsp1109I	GCAGC	3 cut(s)	255, 724, 802
LweI	GCATC	1 cut(s)	1051
MaeI	CTAG	3 cut(s)	725, 1086, 1146
MaeII	ACGT	2 cut(s)	225, 249
MaeIII	GTNAC	2 cut(s)	537, 1163
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MhlI	GDGCHC	2 cut(s)	638, 1009
MlsI	TGGCCA	1 cut(s)	351
MluNI	TGGCCA	1 cut(s)	351
MmeI	TCCRAC	4 cut(s)	171, 192, 279, 633
Mox20I	TGGCCA	1 cut(s)	351
MroXI	GAANNNNTTC	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	7 cut(s)	309, 573, 897, 929, 1035, 1092, 1142
MslI	CAYNNNNRTG	4 cut(s)	345, 357, 1112, 1159
Msp20I	TGGCCA	1 cut(s)	351
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	215, 967
MvaI	CCWGG	2 cut(s)	215, 967
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	180, 434
NdeI	CATATG	1 cut(s)	609
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	4 cut(s)	344, 416, 761, 1179
NlaIV	GGNNCC	3 cut(s)	6, 179, 497
NmeAIII	GCCGAG	1 cut(s)	481
NspV	TTCGAA	1 cut(s)	419
PauI	GCGCGC	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	578
PflFI	GACNNNGTC	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	965
PkrI	GCNGC	3 cut(s)	270, 714, 817
PpuMI	RGGWCCY	1 cut(s)	177
PshBI	ATTAAT	1 cut(s)	1092
Psp5II	RGGWCCY	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	213, 965
PspEI	GGTNACC	1 cut(s)	537
PspGI	CCWGG	2 cut(s)	213, 965
PspN4I	GGNNCC	3 cut(s)	6, 179, 497
PspPI	GGNCC	4 cut(s)	4, 177, 337, 946
PspPPI	RGGWCCY	1 cut(s)	177
PsrI	GAACNNNNNNTAC	2 cut(s)	775, 807
PsyI	GACNNNGTC	1 cut(s)	224
PteI	GCGCGC	1 cut(s)	466
RsaI	GTAC	1 cut(s)	875
RsaNI	GTAC	1 cut(s)	874
RseI	CAYNNNNRTG	4 cut(s)	345, 357, 1112, 1159
SaqAI	TTAA	7 cut(s)	309, 573, 897, 929, 1035, 1092, 1142
SatI	GCNGC	3 cut(s)	269, 713, 816
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	4 cut(s)	4, 177, 337, 946
ScrFI	CCNGG	2 cut(s)	215, 967
SduI	GDGCHC	2 cut(s)	638, 1009
SfaNI	GCATC	1 cut(s)	1051
SfuI	TTCGAA	1 cut(s)	419
SinI	GGWCC	3 cut(s)	4, 177, 946
SmiMI	CAYNNNNRTG	4 cut(s)	345, 357, 1112, 1159
SmlI	CTYRAG	2 cut(s)	161, 642
SmoI	CTYRAG	2 cut(s)	161, 642
SpeI	ACTAGT	1 cut(s)	1145
SsiI	CCGC	3 cut(s)	172, 181, 287
SspI	AATATT	1 cut(s)	659
SspMI	CTAG	3 cut(s)	725, 1086, 1146
StyD4I	CCNGG	2 cut(s)	213, 965
StyI	CCWWGG	2 cut(s)	441, 1085
TaaI	ACNGT	2 cut(s)	736, 868
TaiI	ACGT	2 cut(s)	228, 252
TaqI	TCGA	5 cut(s)	228, 303, 323, 419, 794
TfiI	GAWTC	1 cut(s)	578
Tru1I	TTAA	7 cut(s)	309, 573, 897, 929, 1035, 1092, 1142
Tru9I	TTAA	7 cut(s)	309, 573, 897, 929, 1035, 1092, 1142
TseI	GCWGC	3 cut(s)	268, 712, 815
TspDTI	ATGAA	3 cut(s)	385, 788, 1046
TspGWI	ACGGA	1 cut(s)	474
Tth111I	GACNNNGTC	1 cut(s)	224
VpaK11BI	GGWCC	3 cut(s)	4, 177, 946
VspI	ATTAAT	1 cut(s)	1092
XapI	RAATTY	5 cut(s)	156, 720, 850, 939, 970
XbaI	TCTAGA	1 cut(s)	724
XmaJI	CCTAGG	1 cut(s)	1085
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	3 cut(s)	725, 1086, 1146
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.