Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004150

Physical Location & Seq

Genomic Coordinates Forward (+)

37273869 .. 37277467

Gene Structure 3599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG292800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGTTTTACATCATTAAAGATTGCAAATTTGGTTGTGGAGTTGTTGTCATTTGTTTATGTAATGTATGGAATATTAGCTCGTTCTGTTTGTGTGAACTTCAACTGTTTTTCCTTGGGGATTGCTTCTCTCAGGATGACTTTGCGGAGGTGTCAGTATTCGATGTTAATGGGAAGAAGTCGAAACCACACAAGGGGTTTGCCAATGGCCATTTGAATGGCGAAAATGCAAAGAGTGTTGCTGAGAAGAGTTTCATAGGAAACTATGATCATGGTTCGAAGAAAGCAAGGCAAGCTTCCTTGGATGTAGCTCGCAACGGAAAGCGCGCTTCAAGGAAGAATATGGAGGATAGGTTCCCTCGGCTATCTGAGGAAATTGGTATGGATGTGAAGTGGTTACCCCTTATTGATTATCTAAGCACATTTGGGTTTAAGGAATCACACTTTATTCAAATGTATGAGAGGCATATGCCTTCTCTTCAAATAAATGTGTGCTCTGCTCAAGAAAGGTTGGAATATTTGTTGAGTGTTGGTGTCAAGCAGAGAGATATAAGAAGAATGGTTTTGAGGCAGCCACAAATTCTAGAATATACAGTTGAGAACAATTTGAAGTCCCATGTTGCTTTCCTGATGAACTTGGGTATTCCAAGTTCCAGAATTGGGCAGATTATTGCTGCTACTCCTTCTCTCTTTTCTTATAGTGTTGAGAATTCGTTGAAACCGACTGTAAGGTACTTGGTTGAAGAGGTAGGGATTAAGGAAAAAGATGTAGGCAAAGTGGTGCAGTTAAGCCCTCAAATTCTGGTCCAGCGAATTGATATATCCTGGAAATCTCGTTGTAGTTTTCTTTCAAATGAGATAGGAGCACCCAGAGAAAGTATTGTGAAGATGGTTAAAAAGCATCCTCAGTTCCTTCATTACAGTATTGATGATGGACTACTGCCTAGGATTAATTTCCTTAGGAGCATTGGGATGTGTAATTCTGACATCTTGAAACTTTTAACTAGTCTCACACAGGTACTATCTCTGTCACTAGAGGAGAATCTGAAACCCAAGTACATGTACTTAGTCAATGAACTTAATAATGAAGTGCATTCTTTGACCAAATATCCTATGTACTTAAGCTTGTCTTTAGACCAGAGAATTCGCCCTCGACATAGATTCTTGGTCTCCCTGAAGAAAGCACCCAAGGGACCATTTCCGCTGAGTTCATTTGTTCCAACAGATGAATCCTTTTGTCAGCAGTGGGGAACAAGCGTGGATAAATATCTGGCTTTCAGGCAGAGATTACTGCTCAAGGAGTTTGCTGAAAAATATGAAAGAAAGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

442

Amino Acids

50.72

Weight (kDa)

9.22

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	135 - 211	3.8e-09	mTERF
mTERF	PF02536	198 - 393	3.5e-40	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55580 AT5G55580 AT5G55580
fragaria_vesca	FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060
malus_domestica	MD03G1188700.v1.1 MD11G1204700.v1.1
prunus_persica	Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1
pyrus_communis	pycom03g14160 pycom11g17740
rosa_chinensis	RchiOBHm_Chr5g0042641
rosa_laevigata	RLG00000034147
rosa_multiflora	Rmu_sc0004355.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038000
rosa_rugosa	Rorug05G0203500 Rorug05G0203500
rosa_samantha	Rh5AG288700 Rh5BG292800 Rh5CG325200 Rh5DG302700
rosa_wichuraiana	Rw5G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	324
AciI	CCGC	2 cut(s)	143, 1199
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	5 cut(s)	26, 576, 706, 795, 1140
AcuI	CTGAAG	1 cut(s)	1193
AfaI	GTAC	5 cut(s)	731, 1017, 1055, 1061, 1115
AfiI	CCNNNNNNNGG	2 cut(s)	191, 657
AflII	CTTAAG	1 cut(s)	1117
AflIII	ACRYGT	1 cut(s)	1056
AhlI	ACTAGT	1 cut(s)	1001
AjnI	CCWGG	1 cut(s)	821
AloI	GAACNNNNNNTCC	2 cut(s)	335, 367
AluBI	AGCT	4 cut(s)	78, 293, 308, 1122
AluI	AGCT	4 cut(s)	78, 293, 308, 1122
Alw21I	GWGCWC	2 cut(s)	494, 865
Alw26I	GTCTC	2 cut(s)	1010, 1171
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	568, 671
ApoI	RAATTY	5 cut(s)	26, 576, 706, 795, 1140
AseI	ATTAAT	1 cut(s)	948
Asp700I	GAANNNNTTC	1 cut(s)	248
AspA2I	CCTAGG	1 cut(s)	941
AspLEI	GCGC	2 cut(s)	324, 326
AspS9I	GGNCC	2 cut(s)	802, 1190
AsuII	TTCGAA	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	802, 1190
AvrII	CCTAGG	1 cut(s)	941
AxyI	CCTNAGG	1 cut(s)	956
BalI	TGGCCA	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	494, 865
BbvI	GCAGC	2 cut(s)	580, 658
BccI	CCATC	2 cut(s)	880, 923
BciT130I	CCWGG	1 cut(s)	823
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	1010, 1171
BcuI	ACTAGT	1 cut(s)	1001
BfaI	CTAG	4 cut(s)	581, 942, 1002, 1031
BfrI	CTTAAG	1 cut(s)	1117
BisI	GCNGC	2 cut(s)	569, 672
BlnI	CCTAGG	1 cut(s)	941
BlsI	GCNGC	2 cut(s)	570, 673
Bme1390I	CCNGG	1 cut(s)	823
Bme18I	GGWCC	2 cut(s)	802, 1190
BmgT120I	GGNCC	2 cut(s)	802, 1190
BmiI	GGNNCC	2 cut(s)	353, 1191
BmrFI	CCNGG	1 cut(s)	823
BmsI	GCATC	1 cut(s)	907
Bpu14I	TTCGAA	1 cut(s)	275
BpuEI	CTTGAG	2 cut(s)	483, 1277
BsaBI	GATNNNNATC	1 cut(s)	1263
BsaI	GGTCTC	1 cut(s)	1171
BsaJI	CCNNGG	5 cut(s)	112, 297, 356, 941, 1185
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 335, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 657
Bse21I	CCTNAGG	1 cut(s)	956
Bse8I	GATNNNNATC	1 cut(s)	1263
BseBI	CCWGG	1 cut(s)	823
BseDI	CCNNGG	5 cut(s)	112, 297, 356, 941, 1185
BseGI	GGATG	5 cut(s)	139, 307, 388, 898, 975
BseJI	GATNNNNATC	1 cut(s)	1263
BseLI	CCNNNNNNNGG	2 cut(s)	191, 657
BseMII	CTCAG	5 cut(s)	143, 231, 357, 917, 1193
BsePI	GCGCGC	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	1049
BseXI	GCAGC	2 cut(s)	580, 658
BsgI	GTGCAG	1 cut(s)	800
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	207
BsiHKAI	GWGCWC	2 cut(s)	494, 865
BslFI	GGGAC	2 cut(s)	595, 1203
BslI	CCNNNNNNNGG	2 cut(s)	191, 657
BsmAI	GTCTC	2 cut(s)	1010, 1171
BsmFI	GGGAC	2 cut(s)	595, 1203
BsmI	GAATGC	1 cut(s)	1090
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	1171
Bsp119I	TTCGAA	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	494, 865
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	2 cut(s)	143, 1199
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	5 cut(s)	142, 232, 358, 916, 1194
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	353, 1191
BspT104I	TTCGAA	1 cut(s)	275
BspTI	CTTAAG	1 cut(s)	1117
BspTNI	GGTCTC	1 cut(s)	1171
BssECI	CCNNGG	5 cut(s)	112, 297, 356, 941, 1185
BssHII	GCGCGC	1 cut(s)	322
BssMI	GATC	1 cut(s)	265
BssT1I	CCWWGG	4 cut(s)	112, 297, 941, 1185
Bst2UI	CCWGG	1 cut(s)	823
Bst4CI	ACNGT	4 cut(s)	105, 592, 724, 920
Bst6I	CTCTTC	3 cut(s)	239, 480, 735
BstAFI	CTTAAG	1 cut(s)	1117
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	291, 310, 324
BstDEI	CTNAG	8 cut(s)	129, 240, 366, 413, 903, 956, 1063, 1202
BstEII	GGTNACC	1 cut(s)	393
BstF5I	GGATG	5 cut(s)	139, 307, 388, 898, 975
BstFNI	CGCG	1 cut(s)	324
BstHHI	GCGC	2 cut(s)	324, 326
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	2 cut(s)	1010, 1171
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	823
BstNSI	RCATGY	1 cut(s)	1060
BstPI	GGTNACC	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	821
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	580, 658
BstXI	CCANNNNNNTGG	1 cut(s)	215
Bsu36I	CCTNAGG	1 cut(s)	956
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	5 cut(s)	139, 307, 388, 898, 975
BtsI	GCAGTG	1 cut(s)	1247
BtsIMutI	CAGTG	1 cut(s)	1247
Cac8I	GCNNGC	3 cut(s)	291, 310, 324
CfoI	GCGC	2 cut(s)	324, 326
Cfr13I	GGNCC	2 cut(s)	802, 1190
Csp6I	GTAC	5 cut(s)	730, 1016, 1054, 1060, 1114
CviAII	CATG	3 cut(s)	269, 614, 1057
CviJI	RGCY	9 cut(s)	78, 207, 293, 308, 361, 571, 789, 1122, 1271
CviKI_1	RGCY	9 cut(s)	78, 207, 293, 308, 361, 571, 789, 1122, 1271
CviQI	GTAC	5 cut(s)	730, 1016, 1054, 1060, 1114
DdeI	CTNAG	8 cut(s)	129, 240, 366, 413, 903, 956, 1063, 1202
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	3 cut(s)	239, 480, 735
EarI	CTCTTC	3 cut(s)	239, 480, 735
Eco130I	CCWWGG	4 cut(s)	112, 297, 941, 1185
Eco31I	GGTCTC	1 cut(s)	1171
Eco47I	GGWCC	2 cut(s)	802, 1190
Eco57I	CTGAAG	1 cut(s)	1193
Eco81I	CCTNAGG	1 cut(s)	956
Eco91I	GGTNACC	1 cut(s)	393
EcoO65I	GGTNACC	1 cut(s)	393
EcoRI	GAATTC	2 cut(s)	706, 1140
EcoRII	CCWGG	1 cut(s)	821
EcoT14I	CCWWGG	4 cut(s)	112, 297, 941, 1185
ErhI	CCWWGG	4 cut(s)	112, 297, 941, 1185
FaeI	CATG	3 cut(s)	272, 617, 1060
FalI	AAGNNNNNCTT	4 cut(s)	277, 309, 1111, 1143
FaqI	GGGAC	2 cut(s)	595, 1203
FatI	CATG	3 cut(s)	268, 613, 1056
FauNDI	CATATG	1 cut(s)	465
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	569, 672
FokI	GGATG	5 cut(s)	146, 314, 395, 885, 982
Fsp4HI	GCNGC	2 cut(s)	569, 672
FspBI	CTAG	4 cut(s)	581, 942, 1002, 1031
GlaI	GCGC	2 cut(s)	323, 325
GluI	GCNGC	2 cut(s)	569, 672
HaeIII	GGCC	1 cut(s)	207
HhaI	GCGC	2 cut(s)	324, 326
Hin1II	CATG	3 cut(s)	272, 617, 1060
Hin6I	GCGC	2 cut(s)	322, 324
HinP1I	GCGC	2 cut(s)	322, 324
HindIII	AAGCTT	2 cut(s)	291, 1120
HinfI	GANTC	4 cut(s)	434, 1039, 1158, 1226
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	3 cut(s)	367, 982, 1044
Hpy188III	TCNNGA	6 cut(s)	131, 500, 581, 625, 651, 988
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	480, 690, 920
HpyCH4III	ACNGT	4 cut(s)	105, 592, 724, 920
HpyCH4V	TGCA	4 cut(s)	24, 227, 781, 1090
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	8 cut(s)	129, 240, 366, 413, 903, 956, 1063, 1202
Hsp92II	CATG	3 cut(s)	272, 617, 1060
HspAI	GCGC	2 cut(s)	322, 324
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	2 cut(s)	860, 960
Lsp1109I	GCAGC	2 cut(s)	580, 658
LweI	GCATC	1 cut(s)	907
MaeI	CTAG	4 cut(s)	581, 942, 1002, 1031
MaeIII	GTNAC	2 cut(s)	393, 1026
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	9 cut(s)	184, 256, 289, 346, 467, 564, 752, 895, 1186
MhlI	GDGCHC	2 cut(s)	494, 865
MlsI	TGGCCA	1 cut(s)	207
MluNI	TGGCCA	1 cut(s)	207
MmeI	TCCRAC	2 cut(s)	489, 1241
Mox20I	TGGCCA	1 cut(s)	207
MroXI	GAANNNNTTC	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	207
MslI	CAYNNNNRTG	2 cut(s)	213, 968
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	1201
MspCI	CTTAAG	1 cut(s)	1117
MspR9I	CCNGG	1 cut(s)	823
Mva1269I	GAATGC	1 cut(s)	1090
MvaI	CCWGG	1 cut(s)	823
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeI	CATATG	1 cut(s)	465
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	272, 617, 1060
NlaIV	GGNNCC	2 cut(s)	353, 1191
NmeAIII	GCCGAG	1 cut(s)	337
NmuCI	GTSAC	1 cut(s)	1026
NspI	RCATGY	1 cut(s)	1060
NspV	TTCGAA	1 cut(s)	275
PauI	GCGCGC	1 cut(s)	322
PciI	ACATGT	1 cut(s)	1056
PcsI	WCGNNNNNNNCGW	1 cut(s)	716
PctI	GAATGC	1 cut(s)	1090
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	4 cut(s)	434, 1039, 1158, 1226
PfoI	TCCNGGA	1 cut(s)	821
PkrI	GCNGC	2 cut(s)	570, 673
PscI	ACATGT	1 cut(s)	1056
PshBI	ATTAAT	1 cut(s)	948
Psp6I	CCWGG	1 cut(s)	821
PspEI	GGTNACC	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	821
PspN4I	GGNNCC	2 cut(s)	353, 1191
PspPI	GGNCC	2 cut(s)	802, 1190
PsrI	GAACNNNNNNTAC	2 cut(s)	631, 663
PteI	GCGCGC	1 cut(s)	322
RsaI	GTAC	5 cut(s)	731, 1017, 1055, 1061, 1115
RsaNI	GTAC	5 cut(s)	730, 1016, 1054, 1060, 1114
RseI	CAYNNNNRTG	2 cut(s)	213, 968
SatI	GCNGC	2 cut(s)	569, 672
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	2 cut(s)	802, 1190
ScrFI	CCNGG	1 cut(s)	823
SduI	GDGCHC	2 cut(s)	494, 865
SfaNI	GCATC	1 cut(s)	907
SfuI	TTCGAA	1 cut(s)	275
SinI	GGWCC	2 cut(s)	802, 1190
SmiMI	CAYNNNNRTG	2 cut(s)	213, 968
SmlI	CTYRAG	3 cut(s)	498, 1117, 1292
SmoI	CTYRAG	3 cut(s)	498, 1117, 1292
SpeI	ACTAGT	1 cut(s)	1001
SsiI	CCGC	2 cut(s)	143, 1199
SspI	AATATT	2 cut(s)	73, 515
SspMI	CTAG	4 cut(s)	581, 942, 1002, 1031
StyD4I	CCNGG	1 cut(s)	821
StyI	CCWWGG	4 cut(s)	112, 297, 941, 1185
TaaI	ACNGT	4 cut(s)	105, 592, 724, 920
TaqI	TCGA	4 cut(s)	159, 179, 275, 1150
TatI	WGTACW	3 cut(s)	1053, 1059, 1113
TfiI	GAWTC	4 cut(s)	434, 1039, 1158, 1226
TscAI	CASTG	1 cut(s)	1247
TseFI	GTSAC	1 cut(s)	1026
TseI	GCWGC	2 cut(s)	568, 671
Tsp45I	GTSAC	1 cut(s)	1026
TspDTI	ATGAA	8 cut(s)	241, 644, 902, 1086, 1098, 1197, 1239, 1329
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	1247
Vha464I	CTTAAG	1 cut(s)	1117
VpaK11BI	GGWCC	2 cut(s)	802, 1190
VspI	ATTAAT	1 cut(s)	948
XapI	RAATTY	5 cut(s)	26, 576, 706, 795, 1140
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	1 cut(s)	1060
XmaJI	CCTAGG	1 cut(s)	941
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	4 cut(s)	581, 942, 1002, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.