Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004150

Physical Location & Seq

Genomic Coordinates Forward (+)

15099737 .. 15104285

Gene Structure 4549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G234100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

TTTTCCCACCAGCTGCCGTCTCGTGGTGCTCTCAAGTTCTCAACCCACTCCAACCCCAAAATTCTCAAGTCCAATCGGAGGTCGCGCTATGGCCAGCCTCTGTCTCCTTACGACCAAGATGACGACGAAGAGGTTTCTCGTGCTAGTGATGTTTCGGATGACGATTGGTTGCTCAATGATGACTTTGCAGAAATTTCAGAGTTTGATGTTAATAGAAAGAGGTCCAAATCACACAAGGGATTTGTGAATGGTCATTCGGATGGCAGAAACAGTAAGCACACTCTAGAGAAAAGTAATGCTGCAAACTACTACAATAGTTCTAATCAAACAAATGGTGTCAGTTCCTTGGATGTACCTCGTAAGGGAAAGTCTACAAGGAAAGCTATGGAGGATAGATTTCCTCGGCTATCAGAAGAGGTTGAATTGGATGAGAAGTGGTTACCTCTTATTGATTACCTTAGCACATTTGGGCTTAAGGAATCACACTTTATTCAAATGTATGAAAGGCATATGCCTTCTCTTCAAATAAATGTGTGCTCTGCAAAGGAAAGGTTGGAATATTTGTTGAGTGTTGGGGTCAAACAAAGAGATGTAAGAAGAATGCTTTTGAGGCAGCCACAAATCCTCGAATATACAGTTGAGAACAATTTGAAGTCCCATGTTGCTTTCCTCATGAGTTTGGGTATTCCAAGTTCCAGATTCGGGCAGATTATTGCTGCTGCTCCATCCCTCTTCTCTTATAGCATTGAGAATTCATTGAAACCCACCGTGAGATACTTAGTTGAGGAGGTCGGGATTAAAGAAAAAGATTTAGGTAAAGTTGTGCAGTTAAGCCCTCAAATTCTAGTTCAGCGGATTGATATATCATGGAATACTCGTTTGAATTTTCTTTCTGAGGAGATAGGAGCACCCAGAGATAGTATTGTGAAGATGGTTAAAAAACATCCCCAGTTCCTCCACTTTAGCATCGATGATGGTCTGCTCCCCAGGATCAATTTCCTTAGGAGTATTGGGATGTGTAATGCTGACATCTTGAAAGTCTTAACTAGTCTGACACAGGTACTATCCCTATCACTGGAGGAGAATTTGAAACCCAAGTACAAGTACTTGGTCAATGAACTTCATAATGAAGTGCATTCCTTGACCAAATATCCTATGTACCTAAGCTTGTCTATAGACCAAAGAATTCGCCCCCGACATAGGTTCTTGCTTTCTCTGAAGAAAGCTCCTAAAAGGCCATTTCCTTTAAGTTCACTGGTCCCCACTGATGAATGCTTCTGCCAGCAGTGGGCTGGAACTAGCTTAGATAAATATATAGATTTCCGGCAGAGACTACTGCTCAAGGAGTTTGCCAAAAAATATGAAAGAAAGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

459

Amino Acids

52.91

Weight (kDa)

9.33

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55580 AT5G55580 AT5G55580
fragaria_vesca	FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060
malus_domestica	MD03G1188700.v1.1 MD11G1204700.v1.1
prunus_persica	Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1
pyrus_communis	pycom03g14160 pycom11g17740
rosa_chinensis	RchiOBHm_Chr5g0042641
rosa_laevigata	RLG00000034147
rosa_multiflora	Rmu_sc0004355.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038000
rosa_rugosa	Rorug05G0203500 Rorug05G0203500
rosa_samantha	Rh5AG288700 Rh5BG292800 Rh5CG325200 Rh5DG302700
rosa_wichuraiana	Rw5G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	371
AccII	CGCG	1 cut(s)	85
AciI	CCGC	1 cut(s)	853
AclWI	GGATC	1 cut(s)	998
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	7 cut(s)	60, 192, 751, 840, 883, 1084, 1185
AcuI	CTGAAG	1 cut(s)	1238
AfaI	GTAC	5 cut(s)	354, 1062, 1100, 1106, 1160
AfiI	CCNNNNNNNGG	7 cut(s)	23, 78, 362, 702, 1075, 1200, 1288
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	8 cut(s)	422, 494, 524, 652, 760, 883, 1036, 1090
AhlI	ACTAGT	1 cut(s)	1046
AjnI	CCWGG	1 cut(s)	986
AluBI	AGCT	5 cut(s)	13, 383, 1167, 1226, 1302
AluI	AGCT	5 cut(s)	13, 383, 1167, 1226, 1302
Alw21I	GWGCWC	3 cut(s)	31, 539, 910
Alw26I	GTCTC	3 cut(s)	24, 108, 1324
AlwI	GGATC	1 cut(s)	998
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	2 cut(s)	91, 1235
ApeKI	GCWGC	5 cut(s)	13, 299, 613, 716, 719
ApoI	RAATTY	7 cut(s)	60, 192, 751, 840, 883, 1084, 1185
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	222, 1258
AvaII	GGWCC	2 cut(s)	222, 1258
AxyI	CCTNAGG	1 cut(s)	1001
BalI	TGGCCA	1 cut(s)	93
BauI	CACGAG	2 cut(s)	21, 138
Bbv12I	GWGCWC	3 cut(s)	31, 539, 910
BbvI	GCAGC	4 cut(s)	286, 625, 703, 706
BccI	CCATC	4 cut(s)	254, 733, 925, 968
BciT130I	CCWGG	1 cut(s)	988
BcoDI	GTCTC	3 cut(s)	24, 108, 1324
BcuI	ACTAGT	1 cut(s)	1046
BfaI	CTAG	5 cut(s)	144, 284, 845, 1047, 1299
BfmI	CTRYAG	1 cut(s)	1173
BfrI	CTTAAG	1 cut(s)	473
BisI	GCNGC	5 cut(s)	14, 300, 614, 717, 720
BlsI	GCNGC	5 cut(s)	15, 301, 615, 718, 721
BmcAI	AGTACT	1 cut(s)	1106
Bme1390I	CCNGG	1 cut(s)	988
Bme18I	GGWCC	2 cut(s)	222, 1258
BmgT120I	GGNCC	2 cut(s)	222, 1258
BmiI	GGNNCC	1 cut(s)	1260
BmrFI	CCNGG	1 cut(s)	988
BmrI	ACTGGG	1 cut(s)	943
BmsI	GCATC	1 cut(s)	975
BmuI	ACTGGG	1 cut(s)	943
BpmI	CTGGAG	1 cut(s)	1097
Bpu10I	CCTNAGC	2 cut(s)	458, 1163
BpuEI	CTTGAG	3 cut(s)	17, 50, 1325
Bsa29I	ATCGAT	1 cut(s)	969
BsaJI	CCNNGG	3 cut(s)	345, 401, 986
Bsc4I	CCNNNNNNNGG	7 cut(s)	23, 78, 362, 702, 1075, 1200, 1288
Bse1I	ACTGG	3 cut(s)	949, 1080, 1260
Bse21I	CCTNAGG	1 cut(s)	1001
BseBI	CCWGG	1 cut(s)	988
BseCI	ATCGAT	1 cut(s)	969
BseDI	CCNNGG	3 cut(s)	345, 401, 986
BseGI	GGATG	7 cut(s)	163, 265, 355, 433, 725, 943, 1020
BseLI	CCNNNNNNNGG	7 cut(s)	23, 78, 362, 702, 1075, 1200, 1288
BseMII	CTCAG	1 cut(s)	885
BseNI	ACTGG	3 cut(s)	949, 1080, 1260
BseRI	GAGGAG	3 cut(s)	800, 911, 1094
BseXI	GCAGC	4 cut(s)	286, 625, 703, 706
BsgI	GTGCAG	1 cut(s)	845
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	93, 1237
BshVI	ATCGAT	1 cut(s)	969
BsiHKAI	GWGCWC	3 cut(s)	31, 539, 910
BsiSI	CCGG	1 cut(s)	1324
BslFI	GGGAC	2 cut(s)	640, 1244
BslI	CCNNNNNNNGG	7 cut(s)	23, 78, 362, 702, 1075, 1200, 1288
BsmAI	GTCTC	3 cut(s)	24, 108, 1324
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	2 cut(s)	640, 1244
BsmI	GAATGC	3 cut(s)	606, 1135, 1277
BsnI	GGCC	2 cut(s)	93, 1237
Bsp1286I	GDGCHC	3 cut(s)	31, 539, 910
Bsp143I	GATC	1 cut(s)	990
BspACI	CCGC	1 cut(s)	853
BspANI	GGCC	2 cut(s)	93, 1237
BspCNI	CTCAG	1 cut(s)	886
BspDI	ATCGAT	1 cut(s)	969
BspFNI	CGCG	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	1 cut(s)	1260
BspPI	GGATC	1 cut(s)	998
BspTI	CTTAAG	1 cut(s)	473
BsrI	ACTGG	3 cut(s)	949, 1080, 1260
BssECI	CCNNGG	3 cut(s)	345, 401, 986
BssMI	GATC	1 cut(s)	990
BssSI	CACGAG	2 cut(s)	21, 138
BssT1I	CCWWGG	1 cut(s)	345
Bst2BI	CACGAG	2 cut(s)	21, 138
Bst2UI	CCWGG	1 cut(s)	988
Bst4CI	ACNGT	3 cut(s)	272, 637, 769
Bst6I	CTCTTC	4 cut(s)	123, 408, 525, 737
BstAFI	CTTAAG	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	95, 1283
BstDEI	CTNAG	6 cut(s)	458, 778, 894, 1001, 1163, 1303
BstEII	GGTNACC	1 cut(s)	438
BstF5I	GGATG	7 cut(s)	163, 265, 355, 433, 725, 943, 1020
BstFNI	CGCG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	993
BstMAI	GTCTC	3 cut(s)	24, 108, 1324
BstMBI	GATC	1 cut(s)	990
BstMWI	GCNNNNNNNGC	1 cut(s)	610
BstNI	CCWGG	1 cut(s)	988
BstPI	GGTNACC	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	986
BstSFI	CTRYAG	1 cut(s)	1173
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	4 cut(s)	286, 625, 703, 706
Bsu15I	ATCGAT	1 cut(s)	969
Bsu36I	CCTNAGG	1 cut(s)	1001
BsuRI	GGCC	2 cut(s)	93, 1237
BsuTUI	ATCGAT	1 cut(s)	969
BtsCI	GGATG	7 cut(s)	163, 265, 355, 433, 725, 943, 1020
BtsI	GCAGTG	1 cut(s)	1292
BtsIMutI	CAGTG	4 cut(s)	1073, 1253, 1263, 1292
Cac8I	GCNNGC	2 cut(s)	95, 1283
CaiI	CAGNNNCTG	1 cut(s)	100
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	222, 1258
ClaI	ATCGAT	1 cut(s)	969
Csp6I	GTAC	5 cut(s)	353, 1061, 1099, 1105, 1159
CviAII	CATG	3 cut(s)	659, 673, 867
CviQI	GTAC	5 cut(s)	353, 1061, 1099, 1105, 1159
DdeI	CTNAG	6 cut(s)	458, 778, 894, 1001, 1163, 1303
DpnI	GATC	1 cut(s)	992
DpnII	GATC	1 cut(s)	990
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	4 cut(s)	123, 408, 525, 737
EarI	CTCTTC	4 cut(s)	123, 408, 525, 737
Eco130I	CCWWGG	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	222, 1258
Eco57I	CTGAAG	1 cut(s)	1238
Eco81I	CCTNAGG	1 cut(s)	1001
Eco91I	GGTNACC	1 cut(s)	438
EcoO65I	GGTNACC	1 cut(s)	438
EcoRI	GAATTC	2 cut(s)	751, 1185
EcoRII	CCWGG	1 cut(s)	986
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	3 cut(s)	662, 676, 870
FaqI	GGGAC	2 cut(s)	640, 1244
FatI	CATG	3 cut(s)	658, 672, 866
FauNDI	CATATG	1 cut(s)	510
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	5 cut(s)	14, 300, 614, 717, 720
FokI	GGATG	7 cut(s)	170, 272, 362, 440, 712, 930, 1027
Fsp4HI	GCNGC	5 cut(s)	14, 300, 614, 717, 720
FspBI	CTAG	5 cut(s)	144, 284, 845, 1047, 1299
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	5 cut(s)	14, 300, 614, 717, 720
GsuI	CTGGAG	1 cut(s)	1097
HaeIII	GGCC	2 cut(s)	93, 1237
HapII	CCGG	1 cut(s)	1324
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	662, 676, 870
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	1165
HinfI	GANTC	2 cut(s)	479, 699
HpaII	CCGG	1 cut(s)	1324
Hpy166II	GTNNAC	2 cut(s)	372, 1253
Hpy188I	TCNGA	8 cut(s)	78, 157, 199, 259, 412, 895, 1053, 1218
Hpy188III	TCNNGA	5 cut(s)	284, 673, 696, 793, 1033
Hpy8I	GTNNAC	2 cut(s)	372, 1253
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	525
HpyCH4III	ACNGT	3 cut(s)	272, 637, 769
HpyCH4V	TGCA	5 cut(s)	188, 302, 542, 826, 1135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	610
HpyF3I	CTNAG	6 cut(s)	458, 778, 894, 1001, 1163, 1303
Hsp92II	CATG	3 cut(s)	662, 676, 870
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	990
LmnI	GCTCC	4 cut(s)	727, 905, 987, 1231
Lsp1109I	GCAGC	4 cut(s)	286, 625, 703, 706
LweI	GCATC	1 cut(s)	975
MaeI	CTAG	5 cut(s)	144, 284, 845, 1047, 1299
MaeIII	GTNAC	1 cut(s)	438
MalI	GATC	1 cut(s)	992
MboI	GATC	1 cut(s)	990
MboII	GAAGA	7 cut(s)	140, 425, 512, 609, 724, 940, 1231
MhlI	GDGCHC	3 cut(s)	31, 539, 910
MlsI	TGGCCA	1 cut(s)	93
MluNI	TGGCCA	1 cut(s)	93
MmeI	TCCRAC	2 cut(s)	75, 534
Mox20I	TGGCCA	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	7 cut(s)	210, 474, 798, 830, 936, 1043, 1247
MslI	CAYNNNNRTG	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	93
MspA1I	CMGCKG	2 cut(s)	13, 853
MspCI	CTTAAG	1 cut(s)	473
MspI	CCGG	1 cut(s)	1324
MspR9I	CCNGG	1 cut(s)	988
Mva1269I	GAATGC	3 cut(s)	606, 1135, 1277
MvaI	CCWGG	1 cut(s)	988
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	610
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	1 cut(s)	990
NlaIII	CATG	3 cut(s)	662, 676, 870
NlaIV	GGNNCC	1 cut(s)	1260
NmeAIII	GCCGAG	1 cut(s)	382
PagI	TCATGA	1 cut(s)	672
PctI	GAATGC	3 cut(s)	606, 1135, 1277
PfeI	GAWTC	2 cut(s)	479, 699
PkrI	GCNGC	5 cut(s)	15, 301, 615, 718, 721
Psp6I	CCWGG	1 cut(s)	986
PspEI	GGTNACC	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	986
PspN4I	GGNNCC	1 cut(s)	1260
PspPI	GGNCC	2 cut(s)	222, 1258
PsrI	GAACNNNNNNTAC	2 cut(s)	676, 708
PstNI	CAGNNNCTG	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	5 cut(s)	354, 1062, 1100, 1106, 1160
RsaNI	GTAC	5 cut(s)	353, 1061, 1099, 1105, 1159
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	7 cut(s)	210, 474, 798, 830, 936, 1043, 1247
SatI	GCNGC	5 cut(s)	14, 300, 614, 717, 720
Sau3AI	GATC	1 cut(s)	990
Sau96I	GGNCC	2 cut(s)	222, 1258
ScaI	AGTACT	1 cut(s)	1106
ScrFI	CCNGG	1 cut(s)	988
SduI	GDGCHC	3 cut(s)	31, 539, 910
SfaNI	GCATC	1 cut(s)	975
SfcI	CTRYAG	1 cut(s)	1173
SinI	GGWCC	2 cut(s)	222, 1258
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	4 cut(s)	32, 65, 473, 1340
SmoI	CTYRAG	4 cut(s)	32, 65, 473, 1340
SpeI	ACTAGT	1 cut(s)	1046
SsiI	CCGC	1 cut(s)	853
SspI	AATATT	1 cut(s)	560
SspMI	CTAG	5 cut(s)	144, 284, 845, 1047, 1299
StyD4I	CCNGG	1 cut(s)	986
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	3 cut(s)	272, 637, 769
TaqI	TCGA	2 cut(s)	627, 969
TatI	WGTACW	2 cut(s)	1098, 1104
TfiI	GAWTC	2 cut(s)	479, 699
Tru1I	TTAA	7 cut(s)	210, 474, 798, 830, 936, 1043, 1247
Tru9I	TTAA	7 cut(s)	210, 474, 798, 830, 936, 1043, 1247
TscAI	CASTG	4 cut(s)	1080, 1260, 1270, 1292
TseI	GCWGC	5 cut(s)	13, 299, 613, 716, 719
TspDTI	ATGAA	7 cut(s)	516, 744, 1112, 1131, 1143, 1284, 1377
TspRI	CASTG	4 cut(s)	1080, 1260, 1270, 1292
Vha464I	CTTAAG	1 cut(s)	473
VpaK11BI	GGWCC	2 cut(s)	222, 1258
XapI	RAATTY	7 cut(s)	60, 192, 751, 840, 883, 1084, 1185
XbaI	TCTAGA	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1289
XmiI	GTMKAC	1 cut(s)	371
XspI	CTAG	5 cut(s)	144, 284, 845, 1047, 1299
ZrmI	AGTACT	1 cut(s)	1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.