Rorug05G0203500
ERF Family

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000498
Physical Location & Seq
Forward (+)
20216496 .. 20219737
3242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0203500.1

Sequence Viewer

Length: 1272 bp
ATGGTTCCGCAATCCAACAGTCGACTGAGGGTTCAAGATAGGGTCAGTGAACTACCAGATGCAGTTTTGTGTCACATACTTAGTTTCCTTGGACCAGATTATGCAAAGTGTGCTGTCAGGACCAGTATTTTGTCTAAGAGATGGAAGAGCATGTGGGCCTGTGCTCCCAATGTGAACTTGAACAGTCGAGATTTCTCCTCCTCTGCTGATTTCAAAGCGTTTGCTGATCGCTTACTTCTTCTTCGTGACTCGTCAACCATTCAAAAGTTGTATCTTCATTTCAGTCTTTGCTCTGCTGAAGATTTCTCTCGTGTTGATGCTTGGATTCGCACTGCTATTAGGTGTAACGTGGTGGAGCTTGATCTTTGTGTCTATTCAGATGGAGTGTGTTTCCCAAGTCTCAAATTCTTCTACGTTACTGTCCCTACTGATAAAGACTCCATGGATTTTTCTCATTGCCCTGCGCTTGAACATTTAGCTATAGATGGATCTCATGGAGAGGATGGTGTTTATCTCAACATCTCTGTGTCTGAACTGAAGACGTTGAAGATAACTAGTAAAGATATATACAGTGTTAACATCAATGCCCCAAAACTTGAAAAACTTGATCTCAAGGAATCGGTTTTGTCAGATTATAACTTGGAGAATACAAAATCCCTAGTCGAAGCTAATATTTATCTCTATCACGAAGAGGAAGAAGGCGACGAAGAGGATGCCGCTTTCTATGCAACTAATCTCTTGGAAGGAATTTCCGGTGTTAAATATCTGTTCCTTTCCTCTCGTATCTGTGAGAATTGTTCTGTGCCTGCTTTTGATAATTTGAGCAAATTGACGCTAGCTCTTCATAGCGGCTGTTATGGGTGGGGAATTCTAACGATGTTGTTGGAGAGAGCATCAAATCTAGAATGCCTTGTGTTGGAACATGACCATCATCATTATCCCGCCTATTGTGGTGAATCAGAGTCGGTGATTGAACTTGAAGATCCTATTGAACTTCCCCCTGAAGTAGTTACATGGAGTCCACCAGAGTCTGTTCCTAAATGTGTGTCGTCACACCTCAAGAGTGTCTCCTTAAAGGGATTCCAGGGAAAGCATTTCTCGGGACATGTAGATGAAATGGAAGTGCTCAAGTATTTACTAGAGAATGGTCAAGTTTTGAAGGAGATGACTATTTACACTGAGTTTCTAGAACAGGAGTTGTACGGTGAACTTTCAAGGTTTGAATGGGGTTCAGAGACTTGTCAAGTTGAGATTATCAGCAAGGGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST-HTH RRM_1 zf-CCCH

Protein Analysis

423

Amino Acids

47.67

Weight (kDa)

4.87

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 134 - 324 1.2e-06 At1g61320/AtMIF1, LRR domain
FBD PF08387 342 - 391 3.7e-15 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05160 AT2G05160 AT2G05160
fragaria_vesca FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900
malus_domestica MD03G1188600.v1.1 MD09G1123600.v1.1 MD17G1114400.v1.1
prunus_persica Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1
pyrus_communis pycom03g14150 pycom09g04760 pycom17g10570
rosa_chinensis RchiOBHm_Chr2g0156481 RchiOBHm_Chr5g0042651
rosa_laevigata RLG00000020916 RLG00000034148
rosa_multiflora Rmu_sc0004355.1_g000004 Rmu_sc0005392.1_g000010
rosa_roxburghii Rroxscaffold_1G00037990 Rroxscaffold_2G00093000
rosa_rugosa Rorug02G0453300 Rorug02G0453400 Rorug02G0453500 Rorug02G0453600 Rorug05G0203500 Rorug05G0203500 Rorug05G0203600.1 Rorug05G0203700
rosa_samantha Rh2AG519700 Rh2BG532000 Rh2CG504700 Rh2DG541000 Rh5AG288800 Rh5BG292900 Rh5CG325300 Rh5DG302800
rosa_wichuraiana Rw2G042840 Rw5G026790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
AccI GTMKAC 1 cut(s) 22
AciI CCGC 4 cut(s) 8, 717, 849, 942
AclWI GGATC 2 cut(s) 496, 977
AcsI RAATTY 3 cut(s) 404, 747, 867
AcuI CTGAAG 3 cut(s) 318, 557, 1023
AfaI GTAC 1 cut(s) 1202
AfiI CCNNNNNNNGG 1 cut(s) 916
AflIII ACRYGT 1 cut(s) 1105
AhlI ACTAGT 1 cut(s) 554
AjnI CCWGG 1 cut(s) 1083
AluBI AGCT 4 cut(s) 358, 479, 668, 839
AluI AGCT 4 cut(s) 358, 479, 668, 839
Alw21I GWGCWC 2 cut(s) 166, 1128
Alw26I GTCTC 3 cut(s) 404, 1072, 1229
AlwI GGATC 2 cut(s) 496, 977
AlwNI CAGNNNCTG 1 cut(s) 1031
Ama87I CYCGRG 1 cut(s) 1099
AoxI GGCC 1 cut(s) 156
ApoI RAATTY 3 cut(s) 404, 747, 867
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 3 cut(s) 92, 120, 156
AsuHPI GGTGA 3 cut(s) 965, 979, 1217
AsuNHI GCTAGC 1 cut(s) 835
AvaI CYCGRG 1 cut(s) 1099
AvaII GGWCC 2 cut(s) 92, 120
BauI CACGAG 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 545
Bbv12I GWGCWC 2 cut(s) 166, 1128
BccI CCATC 5 cut(s) 135, 374, 479, 497, 936
BcgI CGANNNNNNTGC 2 cut(s) 695, 729
BciT130I CCWGG 1 cut(s) 1085
BcoDI GTCTC 3 cut(s) 404, 1072, 1229
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 6 cut(s) 555, 659, 836, 902, 1139, 1187
BfmI CTRYAG 1 cut(s) 480
BisI GCNGC 2 cut(s) 717, 850
BlsI GCNGC 2 cut(s) 718, 851
Bme1390I CCNGG 1 cut(s) 1085
Bme18I GGWCC 2 cut(s) 92, 120
BmeT110I CYCGRG 1 cut(s) 1099
BmgT120I GGNCC 3 cut(s) 92, 120, 156
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 1085
BmsI GCATC 4 cut(s) 49, 307, 703, 902
BmtI GCTAGC 1 cut(s) 839
BpiI GAAGAC 1 cut(s) 545
BpuEI CTTGAG 3 cut(s) 596, 1043, 1112
BsaJI CCNNGG 3 cut(s) 88, 441, 1084
BsaWI WCCGGW 1 cut(s) 752
Bsc4I CCNNNNNNNGG 1 cut(s) 916
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 454
BseBI CCWGG 1 cut(s) 1085
BseDI CCNNGG 3 cut(s) 88, 441, 1084
BseGI GGATG 2 cut(s) 508, 718
BseLI CCNNNNNNNGG 1 cut(s) 916
BseMI GCAATG 1 cut(s) 454
BseMII CTCAG 2 cut(s) 17, 1170
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 2 cut(s) 187, 190
BshFI GGCC 1 cut(s) 158
BsiHKAI GWGCWC 2 cut(s) 166, 1128
BsiHKCI CYCGRG 1 cut(s) 1099
BsiSI CCGG 1 cut(s) 753
BslFI GGGAC 2 cut(s) 407, 1116
BslI CCNNNNNNNGG 1 cut(s) 916
BsmAI GTCTC 3 cut(s) 404, 1072, 1229
BsmFI GGGAC 2 cut(s) 407, 1116
BsmI GAATGC 1 cut(s) 911
BsnI GGCC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 1099
Bsp1286I GDGCHC 2 cut(s) 166, 1128
Bsp143I GATC 6 cut(s) 226, 361, 488, 607, 982, 1265
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 4 cut(s) 8, 717, 849, 942
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 2 cut(s) 18, 1171
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 839
BspPI GGATC 2 cut(s) 496, 977
BspQI GCTCTTC 2 cut(s) 140, 846
BsrDI GCAATG 1 cut(s) 454
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 3 cut(s) 88, 441, 1084
BssMI GATC 6 cut(s) 226, 361, 488, 607, 982, 1265
BssSI CACGAG 1 cut(s) 309
BssT1I CCWWGG 2 cut(s) 88, 441
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 1085
Bst4CI ACNGT 5 cut(s) 20, 185, 421, 572, 1205
Bst6I CTCTTC 4 cut(s) 140, 684, 702, 846
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 807, 837
BstDEI CTNAG 5 cut(s) 26, 80, 135, 1179, 1269
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 2 cut(s) 508, 718
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 6 cut(s) 229, 364, 491, 610, 985, 1268
BstMAI GTCTC 3 cut(s) 404, 1072, 1229
BstMBI GATC 6 cut(s) 226, 361, 488, 607, 982, 1265
BstMWI GCNNNNNNNGC 2 cut(s) 110, 725
BstNI CCWGG 1 cut(s) 1085
BstNSI RCATGY 2 cut(s) 154, 1109
BstSCI CCNGG 1 cut(s) 1083
BstSFI CTRYAG 1 cut(s) 480
BstV2I GAAGAC 1 cut(s) 545
BstX2I RGATCY 3 cut(s) 488, 982, 1265
BstYI RGATCY 3 cut(s) 488, 982, 1265
BsuRI GGCC 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 2 cut(s) 508, 718
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 4 cut(s) 52, 330, 577, 1176
Cac8I GCNNGC 2 cut(s) 807, 837
CaiI CAGNNNCTG 1 cut(s) 1031
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 3 cut(s) 92, 120, 156
CseI GACGC 1 cut(s) 841
Csp6I GTAC 1 cut(s) 1201
CviAII CATG 6 cut(s) 151, 442, 494, 923, 1014, 1106
CviJI RGCY 6 cut(s) 158, 358, 479, 668, 839, 852
CviKI_1 RGCY 6 cut(s) 158, 358, 479, 668, 839, 852
CviQI GTAC 1 cut(s) 1201
DdeI CTNAG 5 cut(s) 26, 80, 135, 1179, 1269
DpnI GATC 6 cut(s) 228, 363, 490, 609, 984, 1267
DpnII GATC 6 cut(s) 226, 361, 488, 607, 982, 1265
Eam1104I CTCTTC 4 cut(s) 140, 684, 702, 846
EarI CTCTTC 4 cut(s) 140, 684, 702, 846
Eco130I CCWWGG 2 cut(s) 88, 441
Eco47I GGWCC 2 cut(s) 92, 120
Eco57I CTGAAG 3 cut(s) 318, 557, 1023
Eco88I CYCGRG 1 cut(s) 1099
EcoRI GAATTC 1 cut(s) 867
EcoRII CCWGG 1 cut(s) 1083
EcoT14I CCWWGG 2 cut(s) 88, 441
ErhI CCWWGG 2 cut(s) 88, 441
FaeI CATG 6 cut(s) 154, 445, 497, 926, 1017, 1109
FaqI GGGAC 2 cut(s) 407, 1116
FatI CATG 6 cut(s) 150, 441, 493, 922, 1013, 1105
FauI CCCGC 1 cut(s) 949
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 717, 850
FokI GGATG 2 cut(s) 515, 725
Fsp4HI GCNGC 2 cut(s) 717, 850
FspBI CTAG 6 cut(s) 555, 659, 836, 902, 1139, 1187
GlaI GCGC 1 cut(s) 465
GluI GCNGC 2 cut(s) 717, 850
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 753
HgaI GACGC 1 cut(s) 841
HhaI GCGC 1 cut(s) 466
Hin1II CATG 6 cut(s) 154, 445, 497, 926, 1017, 1109
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HincII GTYRAC 3 cut(s) 23, 255, 577
HindII GTYRAC 3 cut(s) 23, 255, 577
HinfI GANTC 9 cut(s) 248, 325, 437, 617, 956, 962, 1018, 1028, 1080
HpaI GTTAAC 1 cut(s) 577
HpaII CCGG 1 cut(s) 753
HphI GGTGA 3 cut(s) 965, 979, 1217
Hpy166II GTNNAC 7 cut(s) 23, 50, 175, 255, 577, 1022, 1208
Hpy188I TCNGA 5 cut(s) 379, 532, 631, 961, 1234
Hpy188III TCNNGA 9 cut(s) 35, 118, 188, 245, 686, 902, 1060, 1101, 1187
Hpy8I GTNNAC 7 cut(s) 23, 50, 175, 255, 577, 1022, 1208
Hpy99I CGWCG 1 cut(s) 707
HpyAV CCTTC 3 cut(s) 692, 737, 1153
HpyCH4III ACNGT 5 cut(s) 20, 185, 421, 572, 1205
HpyCH4IV ACGT 3 cut(s) 348, 414, 542
HpyCH4V TGCA 3 cut(s) 62, 104, 728
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 725
HpyF3I CTNAG 5 cut(s) 26, 80, 135, 1179, 1269
HpySE526I ACGT 3 cut(s) 348, 414, 542
Hsp92II CATG 6 cut(s) 154, 445, 497, 926, 1017, 1109
HspAI GCGC 1 cut(s) 464
KspAI GTTAAC 1 cut(s) 577
Kzo9I GATC 6 cut(s) 226, 361, 488, 607, 982, 1265
LguI GCTCTTC 2 cut(s) 140, 846
LmnI GCTCC 2 cut(s) 169, 355
LweI GCATC 4 cut(s) 49, 307, 703, 902
MaeI CTAG 6 cut(s) 555, 659, 836, 902, 1139, 1187
MaeII ACGT 3 cut(s) 348, 414, 542
MaeIII GTNAC 6 cut(s) 71, 245, 344, 415, 1009, 1050
MalI GATC 6 cut(s) 228, 363, 490, 609, 984, 1267
MboI GATC 6 cut(s) 226, 361, 488, 607, 982, 1265
MflI RGATCY 3 cut(s) 488, 982, 1265
MhlI GDGCHC 2 cut(s) 166, 1128
MluCI AATT 6 cut(s) 404, 747, 793, 817, 827, 867
MlyI GAGTC 5 cut(s) 242, 431, 971, 1027, 1037
MmeI TCCRAC 3 cut(s) 39, 864, 897
MnlI CCTC 8 cut(s) 21, 208, 211, 493, 685, 703, 787, 1067
MseI TTAA 3 cut(s) 576, 759, 1073
MslI CAYNNNNRTG 2 cut(s) 524, 1110
MspI CCGG 1 cut(s) 753
MspR9I CCNGG 1 cut(s) 1085
Mva1269I GAATGC 1 cut(s) 911
MvaI CCWGG 1 cut(s) 1085
MwoI GCNNNNNNNGC 2 cut(s) 110, 725
NcoI CCATGG 1 cut(s) 441
NdeII GATC 6 cut(s) 226, 361, 488, 607, 982, 1265
NheI GCTAGC 1 cut(s) 835
NlaIII CATG 6 cut(s) 154, 445, 497, 926, 1017, 1109
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 71, 245, 1050
NspI RCATGY 2 cut(s) 154, 1109
PciI ACATGT 1 cut(s) 1105
PciSI GCTCTTC 2 cut(s) 140, 846
PctI GAATGC 1 cut(s) 911
PfeI GAWTC 4 cut(s) 325, 617, 956, 1080
PkrI GCNGC 2 cut(s) 718, 851
PleI GAGTC 5 cut(s) 242, 431, 970, 1026, 1036
PpsI GAGTC 5 cut(s) 242, 431, 970, 1026, 1036
PscI ACATGT 1 cut(s) 1105
PsiI TTATAA 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 1083
PspGI CCWGG 1 cut(s) 1083
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 92, 120, 156
PstNI CAGNNNCTG 1 cut(s) 1031
PsuI RGATCY 3 cut(s) 488, 982, 1265
RsaI GTAC 1 cut(s) 1202
RsaNI GTAC 1 cut(s) 1201
RseI CAYNNNNRTG 2 cut(s) 524, 1110
SalI GTCGAC 1 cut(s) 21
SapI GCTCTTC 2 cut(s) 140, 846
SaqAI TTAA 3 cut(s) 576, 759, 1073
SatI GCNGC 2 cut(s) 717, 850
Sau3AI GATC 6 cut(s) 226, 361, 488, 607, 982, 1265
Sau96I GGNCC 3 cut(s) 92, 120, 156
SchI GAGTC 5 cut(s) 242, 431, 971, 1027, 1037
ScrFI CCNGG 1 cut(s) 1085
SduI GDGCHC 2 cut(s) 166, 1128
SfaNI GCATC 4 cut(s) 49, 307, 703, 902
SfcI CTRYAG 1 cut(s) 480
SinI GGWCC 2 cut(s) 92, 120
SmiMI CAYNNNNRTG 2 cut(s) 524, 1110
SmlI CTYRAG 3 cut(s) 611, 1058, 1127
SmoI CTYRAG 3 cut(s) 611, 1058, 1127
SpeI ACTAGT 1 cut(s) 554
Sse9I AATT 6 cut(s) 404, 747, 793, 817, 827, 867
SsiI CCGC 4 cut(s) 8, 717, 849, 942
SspI AATATT 1 cut(s) 673
SspMI CTAG 6 cut(s) 555, 659, 836, 902, 1139, 1187
StyD4I CCNGG 1 cut(s) 1083
StyI CCWWGG 2 cut(s) 88, 441
TaaI ACNGT 5 cut(s) 20, 185, 421, 572, 1205
TaiI ACGT 3 cut(s) 351, 417, 545
TaqI TCGA 3 cut(s) 22, 187, 663
TasI AATT 6 cut(s) 404, 747, 793, 817, 827, 867
TauI GCSGC 2 cut(s) 719, 852
TfiI GAWTC 4 cut(s) 325, 617, 956, 1080
Tru1I TTAA 3 cut(s) 576, 759, 1073
Tru9I TTAA 3 cut(s) 576, 759, 1073
TscAI CASTG 4 cut(s) 52, 337, 577, 1183
TseFI GTSAC 3 cut(s) 71, 245, 1050
Tsp45I GTSAC 3 cut(s) 71, 245, 1050
TspDTI ATGAA 3 cut(s) 266, 833, 1128
TspRI CASTG 4 cut(s) 52, 337, 577, 1183
VpaK11BI GGWCC 2 cut(s) 92, 120
XapI RAATTY 3 cut(s) 404, 747, 867
XbaI TCTAGA 2 cut(s) 901, 1186
XceI RCATGY 2 cut(s) 154, 1109
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 6 cut(s) 555, 659, 836, 902, 1139, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.