FvH4_6g40900

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000498
Physical Location & Seq
Reverse (-)
32328093 .. 32333242
5150 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40900.t5

Sequence Viewer

Length: 1698 bp
ATGGATTTTTCAGAGTCCACAAAAGTAGTTTACAGTAGGATCCAGAAACTAGACCCTGAAAATGTCGGCAAGATTATTGGCATTCTTCTGTTACAAGAACATGGTGAGCGTAACATGATCCGGCTGGCATTTAGCCCTGATAATTTGATCCAGTCTGTGATTAATAAGGCAAAAACCGAGCTATGCAAACATGTAGTGTCGTCTCCAATCTCACCTTCTCAGGTGAACCAAGTGGCTGTTTCAGACCTGCCTATGCAATTCACTCCCTATTCTCCAAGTTTAACACGACCAATCTCGTGTCCCACAACTCTAGGAGCAGCTAATCCATTTAGTAGGGAGGCTCAAGTGGCTGGTGATCAGCAACCACTGCAAGCTGTAGACTTCATCCCACCAGGGTACTTGGATTCTGCTGCTGAAGATTATTGCCTCCAGAGTCATCAAATGCAGTTTCTGCCAGACTTCTCGAGCAATATCTGCTATCATGAACCTGCATTGGGTGTGAGGACTCGAAGGTCTCCAAGCTTGCCTGAGTTTCCTCTTAAGGTTTGCCATTACTTCAGTAAGGGCTTTTGCAAGCATGGAAACAACTGCAGGTACTTCCATGGCCACGCCATGCCAGAGAGCTTCTCACAGTTTTTCTGCCCGAACTCAAATGAGGCTCAAGGTGATGACCATGTTGTCTCTCCTGGCTCCCTTGAGAAGCTAGAGTATGAAATAATTGAACTTCTGAAATCTAGAAGAGGGTTTCCCATATCTATTGCCTCTTTGCCAATGATGTATTATGAGAAATATGGGAGGACTCTTCAGGCCGAGGGGTACCTTACTGAGAGCCAGAGACATGGTAAGGCTGGTTATAGCCTCACAAAGCTTCTTGCTAGATTGAAAAACAGCATTCGTCTCATTGATCGGCCTCATGGACAACACTCGGTTATATTGGCCGAAGACATTCCAAAATACTTGGAGTATACTGGCGAGAAAACTGAACCTGGTGGAATCATTGCTGGTTCTCGACAGATTTATCTCACTTTTCCAGCTGAGAGTAATTTCACTGAGCAAGATGTTTCCAATTATTTCAACAAATATGGGCCAGTTCAAGATGTGCGCATCCCATGCCAGCAGAAGAGGATGTTTGGGTTTGTCACCTTTCTTTATGCAGACACGGTGAGACATATTTTGTCGAAAGGGAACCCTCATTTTGTATGCGGGGCTCGTGTTCTGGTGAAACCTTACAGGGAAAAGTCTAGGCCTGTCGACAGGAAGTTTTCAGACAAGATGCAGCATTCTCCATGCTTCAATTCACATTACATTGATGCGGATGCAGATCTTCACTCAATGCCAAGAATTTGTGACAGTTCAAGACTGCTAAGAAAGCAATTCATAGAGGAGCATCAGCAGGTACTTGAGTGTGAGAGAAGGCGTCGCTCGGAAATGCACTTAGCAGCCAAGCCCTTGTCACATCATCATCATCTCTATTATGGCTACTCTATGGATGATTTCAAGCATCCAGAAGCTAATGCAGACCAAGCTGAGTTCCCATATGCAAAGGAATTTAACATTTTGCTGGATGCTTGGAATAATGCTTCCATCAGTGAGGACAAAATTCGACACATAAACACTAATTACACCGATCACCAGGATAGCCAAGGTATTATCCTCCCAGAGAGCCCATTCGCATCTGCAGTATCAACAGTTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST-HTH RRM_1 zf-CCCH

Protein Analysis

566

Amino Acids

64.28

Weight (kDa)

6.82

Isoelectric Point (pI)

57.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PABC_AtC3H46 PF23182 1 - 61 9.2e-31 AtC3H46 PABC domain
RRM_1 PF00076 348 - 396 1.5e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05160 AT2G05160 AT2G05160
fragaria_vesca FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900
malus_domestica MD03G1188600.v1.1 MD09G1123600.v1.1 MD17G1114400.v1.1
prunus_persica Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1
pyrus_communis pycom03g14150 pycom09g04760 pycom17g10570
rosa_chinensis RchiOBHm_Chr2g0156481 RchiOBHm_Chr5g0042651
rosa_laevigata RLG00000020916 RLG00000034148
rosa_multiflora Rmu_sc0004355.1_g000004 Rmu_sc0005392.1_g000010
rosa_roxburghii Rroxscaffold_1G00037990 Rroxscaffold_2G00093000
rosa_rugosa Rorug02G0453300 Rorug02G0453400 Rorug02G0453500 Rorug02G0453600 Rorug05G0203500 Rorug05G0203500 Rorug05G0203600.1 Rorug05G0203700
rosa_samantha Rh2AG519700 Rh2BG532000 Rh2CG504700 Rh2DG541000 Rh5AG288800 Rh5BG292900 Rh5CG325300 Rh5DG302800
rosa_wichuraiana Rw2G042840 Rw5G026790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 511, 677
Acc16I TGCGCA 1 cut(s) 1103
Acc36I ACCTGC 4 cut(s) 255, 496, 582, 1384
Acc65I GGTACC 1 cut(s) 816
AccB1I GGYRCC 1 cut(s) 816
AccI GTMKAC 3 cut(s) 378, 965, 1251
AciI CCGC 2 cut(s) 1203, 1313
AclWI GGATC 4 cut(s) 34, 47, 112, 142
AcoI YGGCCR 2 cut(s) 604, 936
AcsI RAATTY 3 cut(s) 1341, 1547, 1599
AcuI CTGAAG 3 cut(s) 435, 541, 788
AcyI GRCGYC 1 cut(s) 1417
AfaI GTAC 4 cut(s) 398, 596, 818, 1398
AfiI CCNNNNNNNGG 1 cut(s) 494
AflII CTTAAG 1 cut(s) 539
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 7 cut(s) 722, 883, 1075, 1094, 1294, 1356, 1498
AjnI CCWGG 4 cut(s) 391, 685, 985, 1632
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
Alw26I GTCTC 6 cut(s) 207, 519, 685, 829, 902, 1159
AlwI GGATC 4 cut(s) 34, 47, 112, 142
AlwNI CAGNNNCTG 1 cut(s) 451
Ama87I CYCGRG 1 cut(s) 463
AoxI GGCC 6 cut(s) 604, 807, 908, 936, 1085, 1244
ApeKI GCWGC 4 cut(s) 317, 410, 1276, 1439
ApoI RAATTY 3 cut(s) 1341, 1547, 1599
AseI ATTAAT 1 cut(s) 162
Asp700I GAANNNNTTC 1 cut(s) 945
Asp718I GGTACC 1 cut(s) 816
AspLEI GCGC 1 cut(s) 1104
AspS9I GGNCC 1 cut(s) 1085
AsuHPI GGTGA 9 cut(s) 116, 204, 235, 365, 677, 1132, 1174, 1231, 1622
AvaI CYCGRG 1 cut(s) 463
BaeI ACNNNNGTAYC 2 cut(s) 1388, 1421
BalI TGGCCA 1 cut(s) 606
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 816
BanII GRGCYC 2 cut(s) 1210, 1667
BauI CACGAG 2 cut(s) 295, 1209
BbsI GAAGAC 1 cut(s) 948
BbvI GCAGC 4 cut(s) 329, 397, 1288, 1451
BccI CCATC 1 cut(s) 1592
BciT130I CCWGG 4 cut(s) 393, 687, 987, 1634
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 6 cut(s) 207, 519, 685, 829, 902, 1159
BfaI CTAG 6 cut(s) 50, 311, 704, 735, 876, 1242
BfmI CTRYAG 3 cut(s) 375, 589, 1677
BfrI CTTAAG 1 cut(s) 539
BfuAI ACCTGC 4 cut(s) 255, 496, 582, 1384
BglII AGATCT 1 cut(s) 1321
BisI GCNGC 4 cut(s) 318, 411, 1277, 1440
BlsI GCNGC 4 cut(s) 319, 412, 1278, 1441
Bme1390I CCNGG 4 cut(s) 393, 687, 987, 1634
BmeT110I CYCGRG 1 cut(s) 463
BmgT120I GGNCC 1 cut(s) 1085
BmiI GGNNCC 4 cut(s) 41, 691, 818, 1187
BmrFI CCNGG 4 cut(s) 393, 687, 987, 1634
BmsI GCATC 8 cut(s) 1113, 1263, 1300, 1306, 1396, 1510, 1555, 1682
BpiI GAAGAC 1 cut(s) 948
BplI GAGNNNNNCTC 2 cut(s) 611, 643
BpmI CTGGAG 1 cut(s) 413
BpuEI CTTGAG 4 cut(s) 327, 645, 716, 1421
BsaBI GATNNNNATC 1 cut(s) 1320
BsaHI GRCGYC 1 cut(s) 1417
BsaI GGTCTC 1 cut(s) 519
BsaJI CCNNGG 4 cut(s) 392, 601, 810, 1642
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse1I ACTGG 3 cut(s) 151, 973, 1088
Bse3DI GCAATG 1 cut(s) 996
Bse8I GATNNNNATC 1 cut(s) 1320
BseBI CCWGG 4 cut(s) 393, 687, 987, 1634
BseDI CCNNGG 4 cut(s) 392, 601, 810, 1642
BseGI GGATG 7 cut(s) 384, 1104, 1131, 1321, 1495, 1501, 1570
BseJI GATNNNNATC 1 cut(s) 1320
BseLI CCNNNNNNNGG 1 cut(s) 494
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 6 cut(s) 233, 519, 816, 1026, 1041, 1518
BseNI ACTGG 3 cut(s) 151, 973, 1088
BseRI GAGGAG 1 cut(s) 1397
BseXI GCAGC 4 cut(s) 329, 397, 1288, 1451
BshFI GGCC 6 cut(s) 606, 809, 910, 938, 1087, 1246
BshNI GGYRCC 1 cut(s) 816
BsiHKCI CYCGRG 1 cut(s) 463
BsiSI CCGG 1 cut(s) 121
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 6 cut(s) 207, 519, 685, 829, 902, 1159
BsmBI CGTCTC 2 cut(s) 207, 902
BsmFI GGGAC 1 cut(s) 285
BsmI GAATGC 3 cut(s) 81, 891, 1279
BsnI GGCC 6 cut(s) 606, 809, 910, 938, 1087, 1246
Bso31I GGTCTC 1 cut(s) 519
BsoBI CYCGRG 1 cut(s) 463
Bsp1286I GDGCHC 2 cut(s) 1210, 1667
Bsp143I GATC 7 cut(s) 39, 117, 147, 355, 904, 1321, 1627
Bsp19I CCATGG 1 cut(s) 601
BspACI CCGC 2 cut(s) 1203, 1313
BspANI GGCC 6 cut(s) 606, 809, 910, 938, 1087, 1246
BspCNI CTCAG 6 cut(s) 232, 520, 817, 1027, 1042, 1519
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 4 cut(s) 41, 691, 818, 1187
BspMAI CTGCAG 2 cut(s) 593, 1681
BspMI ACCTGC 4 cut(s) 255, 496, 582, 1384
BspPI GGATC 4 cut(s) 34, 47, 112, 142
BspT107I GGYRCC 1 cut(s) 816
BspTI CTTAAG 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 519
BsrDI GCAATG 1 cut(s) 996
BsrI ACTGG 3 cut(s) 151, 973, 1088
BssECI CCNNGG 4 cut(s) 392, 601, 810, 1642
BssMI GATC 7 cut(s) 39, 117, 147, 355, 904, 1321, 1627
BssNAI GTATAC 1 cut(s) 966
BssNI GRCGYC 1 cut(s) 1417
BssSI CACGAG 2 cut(s) 295, 1209
BssT1I CCWWGG 2 cut(s) 601, 1642
Bst1107I GTATAC 1 cut(s) 966
Bst2BI CACGAG 2 cut(s) 295, 1209
Bst2UI CCWGG 4 cut(s) 393, 687, 987, 1634
Bst4CI ACNGT 5 cut(s) 35, 633, 1162, 1352, 1690
Bst6I CTCTTC 3 cut(s) 733, 807, 1115
BstACI GRCGYC 1 cut(s) 1417
BstAFI CTTAAG 1 cut(s) 539
BstAPI GCANNNNNTGC 4 cut(s) 367, 451, 474, 1110
BstC8I GCNNGC 5 cut(s) 126, 372, 524, 575, 1115
BstDEI CTNAG 8 cut(s) 219, 528, 825, 1035, 1050, 1364, 1435, 1527
BstDSI CCRYGG 1 cut(s) 601
BstF5I GGATG 7 cut(s) 384, 1104, 1131, 1321, 1495, 1501, 1570
BstHHI GCGC 1 cut(s) 1104
BstKTI GATC 7 cut(s) 42, 120, 150, 358, 907, 1324, 1630
BstMAI GTCTC 6 cut(s) 207, 519, 685, 829, 902, 1159
BstMBI GATC 7 cut(s) 39, 117, 147, 355, 904, 1321, 1627
BstMWI GCNNNNNNNGC 7 cut(s) 347, 367, 451, 474, 1110, 1369, 1523
BstNI CCWGG 4 cut(s) 393, 687, 987, 1634
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 4 cut(s) 391, 685, 985, 1632
BstSFI CTRYAG 3 cut(s) 375, 589, 1677
BstV1I GCAGC 4 cut(s) 329, 397, 1288, 1451
BstV2I GAAGAC 1 cut(s) 948
BstX2I RGATCY 2 cut(s) 39, 1321
BstXI CCANNNNNNTGG 1 cut(s) 839
BstYI RGATCY 2 cut(s) 39, 1321
BstZ17I GTATAC 1 cut(s) 966
BsuRI GGCC 6 cut(s) 606, 809, 910, 938, 1087, 1246
BtgI CCRYGG 1 cut(s) 601
BtsCI GGATG 7 cut(s) 384, 1104, 1131, 1321, 1495, 1501, 1570
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 3 cut(s) 365, 1047, 1594
BveI ACCTGC 4 cut(s) 255, 496, 582, 1384
Cac8I GCNNGC 5 cut(s) 126, 372, 524, 575, 1115
CaiI CAGNNNCTG 1 cut(s) 451
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 1104
Cfr13I GGNCC 1 cut(s) 1085
CseI GACGC 1 cut(s) 1406
CsiI ACCWGGT 1 cut(s) 985
Csp6I GTAC 4 cut(s) 397, 595, 817, 1397
CviQI GTAC 4 cut(s) 397, 595, 817, 1397
DdeI CTNAG 8 cut(s) 219, 528, 825, 1035, 1050, 1364, 1435, 1527
DpnI GATC 7 cut(s) 41, 119, 149, 357, 906, 1323, 1629
DpnII GATC 7 cut(s) 39, 117, 147, 355, 904, 1321, 1627
DrdI GACNNNNNNGTC 2 cut(s) 511, 677
DseDI GACNNNNNNGTC 2 cut(s) 511, 677
EaeI YGGCCR 2 cut(s) 604, 936
Eam1104I CTCTTC 3 cut(s) 733, 807, 1115
EarI CTCTTC 3 cut(s) 733, 807, 1115
Eco130I CCWWGG 2 cut(s) 601, 1642
Eco147I AGGCCT 1 cut(s) 1246
Eco24I GRGCYC 2 cut(s) 1210, 1667
Eco31I GGTCTC 1 cut(s) 519
Eco57I CTGAAG 3 cut(s) 435, 541, 788
Eco88I CYCGRG 1 cut(s) 463
EcoRII CCWGG 4 cut(s) 391, 685, 985, 1632
EcoT14I CCWWGG 2 cut(s) 601, 1642
EcoT38I GRGCYC 2 cut(s) 1210, 1667
ErhI CCWWGG 2 cut(s) 601, 1642
Esp3I CGTCTC 2 cut(s) 207, 902
FaqI GGGAC 1 cut(s) 285
FauI CCCGC 1 cut(s) 1196
FauNDI CATATG 1 cut(s) 1537
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 3 cut(s) 378, 965, 1251
Fnu4HI GCNGC 4 cut(s) 318, 411, 1277, 1440
FokI GGATG 7 cut(s) 371, 1091, 1138, 1328, 1488, 1502, 1577
FriOI GRGCYC 2 cut(s) 1210, 1667
Fsp4HI GCNGC 4 cut(s) 318, 411, 1277, 1440
FspAI RTGCGCAY 1 cut(s) 1103
FspBI CTAG 6 cut(s) 50, 311, 704, 735, 876, 1242
FspI TGCGCA 1 cut(s) 1103
GlaI GCGC 1 cut(s) 1103
GluI GCNGC 4 cut(s) 318, 411, 1277, 1440
GsuI CTGGAG 1 cut(s) 413
HaeIII GGCC 6 cut(s) 606, 809, 910, 938, 1087, 1246
HapII CCGG 1 cut(s) 121
HgaI GACGC 1 cut(s) 1406
HhaI GCGC 1 cut(s) 1104
Hin1I GRCGYC 1 cut(s) 1417
Hin6I GCGC 1 cut(s) 1102
HinP1I GCGC 1 cut(s) 1102
HincII GTYRAC 1 cut(s) 1252
HindII GTYRAC 1 cut(s) 1252
HindIII AAGCTT 2 cut(s) 520, 866
HinfI GANTC 6 cut(s) 14, 404, 433, 505, 799, 993
HpaII CCGG 1 cut(s) 121
HphI GGTGA 9 cut(s) 116, 204, 235, 365, 677, 1132, 1174, 1231, 1622
Hpy166II GTNNAC 6 cut(s) 18, 31, 226, 379, 966, 1252
Hpy188I TCNGA 5 cut(s) 13, 244, 729, 1267, 1426
Hpy188III TCNNGA 9 cut(s) 43, 430, 463, 482, 735, 1008, 1094, 1356, 1505
Hpy8I GTNNAC 6 cut(s) 18, 31, 226, 379, 966, 1252
Hpy99I CGWCG 1 cut(s) 1422
HpyAV CCTTC 3 cut(s) 225, 504, 1407
HpyCH4III ACNGT 5 cut(s) 35, 633, 1162, 1352, 1690
HpyF10VI GCNNNNNNNGC 7 cut(s) 347, 367, 451, 474, 1110, 1369, 1523
HpyF3I CTNAG 8 cut(s) 219, 528, 825, 1035, 1050, 1364, 1435, 1527
Hsp92I GRCGYC 1 cut(s) 1417
HspAI GCGC 1 cut(s) 1102
KpnI GGTACC 1 cut(s) 820
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 7 cut(s) 39, 117, 147, 355, 904, 1321, 1627
LmnI GCTCC 3 cut(s) 314, 695, 1384
Lsp1109I GCAGC 4 cut(s) 329, 397, 1288, 1451
LweI GCATC 8 cut(s) 1113, 1263, 1300, 1306, 1396, 1510, 1555, 1682
MabI ACCWGGT 1 cut(s) 985
MaeI CTAG 6 cut(s) 50, 311, 704, 735, 876, 1242
MaeIII GTNAC 6 cut(s) 90, 110, 1138, 1346, 1452, 1690
MalI GATC 7 cut(s) 41, 119, 149, 357, 906, 1323, 1629
MboI GATC 7 cut(s) 39, 117, 147, 355, 904, 1321, 1627
MboII GAAGA 7 cut(s) 77, 428, 750, 794, 953, 1132, 1316
MflI RGATCY 2 cut(s) 39, 1321
MhlI GDGCHC 2 cut(s) 1210, 1667
MlsI TGGCCA 1 cut(s) 606
MluNI TGGCCA 1 cut(s) 606
MlyI GAGTC 4 cut(s) 23, 442, 499, 793
Mox20I TGGCCA 1 cut(s) 606
MroXI GAANNNNTTC 1 cut(s) 945
MscI TGGCCA 1 cut(s) 606
MseI TTAA 4 cut(s) 162, 281, 540, 1551
Msp20I TGGCCA 1 cut(s) 606
MspA1I CMGCKG 1 cut(s) 1034
MspCI CTTAAG 1 cut(s) 539
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 4 cut(s) 393, 687, 987, 1634
Mva1269I GAATGC 3 cut(s) 81, 891, 1279
MvaI CCWGG 4 cut(s) 393, 687, 987, 1634
MwoI GCNNNNNNNGC 7 cut(s) 347, 367, 451, 474, 1110, 1369, 1523
NcoI CCATGG 1 cut(s) 601
NdeI CATATG 1 cut(s) 1537
NdeII GATC 7 cut(s) 39, 117, 147, 355, 904, 1321, 1627
NlaIV GGNNCC 4 cut(s) 41, 691, 818, 1187
NmeAIII GCCGAG 1 cut(s) 835
NmuCI GTSAC 3 cut(s) 1138, 1346, 1452
NsbI TGCGCA 1 cut(s) 1103
NspI RCATGY 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 463
PagI TCATGA 1 cut(s) 481
PceI AGGCCT 1 cut(s) 1246
PciI ACATGT 1 cut(s) 190
PctI GAATGC 3 cut(s) 81, 891, 1279
PdmI GAANNNNTTC 1 cut(s) 945
PfeI GAWTC 2 cut(s) 404, 993
PkrI GCNGC 4 cut(s) 319, 412, 1278, 1441
PleI GAGTC 4 cut(s) 22, 441, 499, 793
PpsI GAGTC 4 cut(s) 22, 441, 499, 793
PscI ACATGT 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 162
Psp6I CCWGG 4 cut(s) 391, 685, 985, 1632
PspGI CCWGG 4 cut(s) 391, 685, 985, 1632
PspN4I GGNNCC 4 cut(s) 41, 691, 818, 1187
PspPI GGNCC 1 cut(s) 1085
PstI CTGCAG 2 cut(s) 593, 1681
PstNI CAGNNNCTG 1 cut(s) 451
PsuI RGATCY 2 cut(s) 39, 1321
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 4 cut(s) 398, 596, 818, 1398
RsaNI GTAC 4 cut(s) 397, 595, 817, 1397
SalI GTCGAC 1 cut(s) 1250
SaqAI TTAA 4 cut(s) 162, 281, 540, 1551
SatI GCNGC 4 cut(s) 318, 411, 1277, 1440
Sau3AI GATC 7 cut(s) 39, 117, 147, 355, 904, 1321, 1627
Sau96I GGNCC 1 cut(s) 1085
SchI GAGTC 4 cut(s) 23, 442, 499, 793
ScrFI CCNGG 4 cut(s) 393, 687, 987, 1634
SduI GDGCHC 2 cut(s) 1210, 1667
SexAI ACCWGGT 1 cut(s) 985
SfaNI GCATC 8 cut(s) 1113, 1263, 1300, 1306, 1396, 1510, 1555, 1682
SfcI CTRYAG 3 cut(s) 375, 589, 1677
Sfr274I CTCGAG 1 cut(s) 463
SlaI CTCGAG 1 cut(s) 463
SmlI CTYRAG 6 cut(s) 342, 463, 539, 660, 695, 1400
SmoI CTYRAG 6 cut(s) 342, 463, 539, 660, 695, 1400
SseBI AGGCCT 1 cut(s) 1246
SsiI CCGC 2 cut(s) 1203, 1313
SspMI CTAG 6 cut(s) 50, 311, 704, 735, 876, 1242
StuI AGGCCT 1 cut(s) 1246
StyD4I CCNGG 4 cut(s) 391, 685, 985, 1632
StyI CCWWGG 2 cut(s) 601, 1642
TaaI ACNGT 5 cut(s) 35, 633, 1162, 1352, 1690
TaqI TCGA 6 cut(s) 464, 508, 1009, 1178, 1251, 1603
TfiI GAWTC 2 cut(s) 404, 993
Tru1I TTAA 4 cut(s) 162, 281, 540, 1551
Tru9I TTAA 4 cut(s) 162, 281, 540, 1551
TscAI CASTG 3 cut(s) 372, 1054, 1594
TseFI GTSAC 3 cut(s) 1138, 1346, 1452
TseI GCWGC 4 cut(s) 317, 410, 1276, 1439
Tsp45I GTSAC 3 cut(s) 1138, 1346, 1452
TspDTI ATGAA 4 cut(s) 373, 498, 726, 1366
TspRI CASTG 3 cut(s) 372, 1054, 1594
Vha464I CTTAAG 1 cut(s) 539
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 3 cut(s) 1341, 1547, 1599
XbaI TCTAGA 1 cut(s) 734
XceI RCATGY 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 463
XmiI GTMKAC 3 cut(s) 378, 965, 1251
XmnI GAANNNNTTC 1 cut(s) 945
XspI CTAG 6 cut(s) 50, 311, 704, 735, 876, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.