pycom09g04760

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000498
Physical Location & Seq
Forward (+)
3522921 .. 3525887
2967 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g04760.3

Sequence Viewer

Length: 1689 bp
ATGGATTTTTCTGAGTCCACAAAAGTTGTGTACAATAGGATCCAGAAGATAGAGCCTGAAAATGTGTCCAAGATTATCGGGTATCTTCTGCTGCAAGACCATGGCGAGCGTGACATGATCCGACTGGCTTTCAGCCCTGATAATTTGATCCAGTCTTTGATTAACAAAGCGAAAGCTGAGCTCGGGTTATGCAAACCGGCAGTGTCTGCTTCAATCTCACCTCAGGTGAACCAAGTTCCTGTTTCCGACTTACCTTTACAATTCACTCCATACAGTCCACGACCGGTTTCATCTCCCACAACCATCGGAGCAGCAAATCCATACAGGGAACTGTCTGGTGATCAGCAACCACTGCAAGCCATAGAGTTTGTTCCACCAGGGTACTCAGATTCAGCGATTGAAGATTATCGCCTCCAAAATCAAATGCAGTTTCTGCCCGAGTTTTCAAGCAATTACTGTTATCATGAACCTGCATTGAGTGTGAGAACCAGTCGAAGGTCTCCAAGCTTGCCTGAATTTCCCCTTAAGGTATGCCATTACTTCAATAAGGGCTTCTGTAAGCATGGAAACAACTGCAGGTACTTCCATGGCCATCCCATGCCAGAAAGCTTTTCACAGTTTTGCAGCCAAAACTCAAATGAGCTTTCAAACGATGATCACGTTGTCTCCCCTGGCTCCCTTGAAAAGCTAGAGATTGAAATAATTGAGCTTTTGAAATCTAGAAGAGGGTTCCCAATATCAATTGCCTCTTTGCCGATGATGTACTACGAGAAATATGGGAGAACTCTTCAGGCCGAGGGATACCTCACTGAGAGCCAGAGACATGGTAAAGCTGGCTACAGCCTGACAAAGCTTCTTGCTCGATTGAAGAACAGCATTCGCCTTATTGACAGGCCTCACGGACAGCACTCAGTTATATTGGCAGAAGATATCCCAAAATACTTAGAGTATGCTGGTGAGAAAACAGAACCTGGTGGGATTATTGCTGGCTCTCGACAGATATATCTGACCTTTCCAGCCGAGAGTAATTTCACGGAGCAAGATGTTTCCAACTACTTCAACAAATATGGGCCAGTTCAAGATGTACGCATCCCGTGTCAACAGAAGAGGATGTTTGGTTTTGTCACCTTTGTTTATGCAGAGACGGTGAGGCATATTTTGTCAAAAGGGAATCCTCATTTTGTATGCGGGGCTCGTGTGCTGGTGAAACCTTACAGGGAAAAGTCTAGGCTTGTTGACAGGAAGTTTTCGGAGAAGATGCAGCACTCCACGTGCTACAATTCACATTTCATGGATGGTGATTCAGAGCTTCACCCAATGCCCAGAGTTTGTGATAGCGCAAGATTTCTAAGGAAGCAGTTCATAGAGGAAAATGAGCAAGCACTCGAACTTGAGAGAAGGCGCCTCTCGGAGATGCATTTAGCAGCTAAGCCCTTATCCCATCATTTCTATTATGGCTACTCGATGGATGAGCTTAAGCATCCAGAAGCCCATGCAGAGCAAATGGAATTCCCATCCTCAAAGGATTTTAATTATTTTCTGGATGTTTTGAACAATGGTTCCACCAGTGAGGACAAAATCAGGCACATTAATACTAATTACAGTGATCAGGATAGCGGTCAAGGAATTAACCTTCCAGAGAGCCCATTCGCAACTCAAATGGCGAGTGGCATATCAACAGTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST-HTH RRM_1 zf-CCCH

Protein Analysis

563

Amino Acids

64.07

Weight (kDa)

6.5

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05160 AT2G05160 AT2G05160
fragaria_vesca FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900
malus_domestica MD03G1188600.v1.1 MD09G1123600.v1.1 MD17G1114400.v1.1
prunus_persica Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1
pyrus_communis pycom03g14150 pycom09g04760 pycom17g10570
rosa_chinensis RchiOBHm_Chr2g0156481 RchiOBHm_Chr5g0042651
rosa_laevigata RLG00000020916 RLG00000034148
rosa_multiflora Rmu_sc0004355.1_g000004 Rmu_sc0005392.1_g000010
rosa_roxburghii Rroxscaffold_1G00037990 Rroxscaffold_2G00093000
rosa_rugosa Rorug02G0453300 Rorug02G0453400 Rorug02G0453500 Rorug02G0453600 Rorug05G0203500 Rorug05G0203500 Rorug05G0203600.1 Rorug05G0203700
rosa_samantha Rh2AG519700 Rh2BG532000 Rh2CG504700 Rh2DG541000 Rh5AG288800 Rh5BG292900 Rh5CG325300 Rh5DG302800
rosa_wichuraiana Rw2G042840 Rw5G026790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 478, 567
AccB1I GGYRCC 1 cut(s) 1401
AciI CCGC 2 cut(s) 1188, 1617
AclWI GGATC 4 cut(s) 34, 47, 112, 142
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 2 cut(s) 515, 1508
AcuI CTGAAG 1 cut(s) 773
AcvI CACGTG 1 cut(s) 1272
AcyI GRCGYC 1 cut(s) 1402
AfaI GTAC 5 cut(s) 32, 383, 581, 764, 1086
AfiI CCNNNNNNNGG 1 cut(s) 495
AflII CTTAAG 2 cut(s) 524, 1475
AgeI ACCGGT 1 cut(s) 283
AjnI CCWGG 3 cut(s) 376, 670, 970
AloI GAACNNNNNNTCC 2 cut(s) 1544, 1576
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 4 cut(s) 504, 670, 814, 1136
AlwI GGATC 4 cut(s) 34, 47, 112, 142
AlwNI CAGNNNCTG 3 cut(s) 206, 433, 971
Ama87I CYCGRG 2 cut(s) 182, 437
AoxI GGCC 4 cut(s) 589, 792, 893, 1070
ApeKI GCWGC 5 cut(s) 91, 311, 624, 1261, 1424
ApoI RAATTY 2 cut(s) 515, 1508
AseI ATTAAT 1 cut(s) 1590
AsiGI ACCGGT 1 cut(s) 283
Asp700I GAANNNNTTC 1 cut(s) 1358
AspLEI GCGC 2 cut(s) 1340, 1404
AspS9I GGNCC 1 cut(s) 1070
AsuHPI GGTGA 9 cut(s) 210, 238, 350, 968, 1117, 1159, 1216, 1304, 1310
AvaI CYCGRG 2 cut(s) 182, 437
AxyI CCTNAGG 1 cut(s) 222
BalI TGGCCA 1 cut(s) 591
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 1401
BanII GRGCYC 3 cut(s) 183, 1195, 1646
BauI CACGAG 1 cut(s) 1194
BbrPI CACGTG 1 cut(s) 1272
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 5 cut(s) 78, 323, 636, 1273, 1436
BccI CCATC 6 cut(s) 311, 600, 1289, 1449, 1459, 1522
BciT130I CCWGG 3 cut(s) 378, 672, 972
BciVI GTATCC 1 cut(s) 794
BclI TGATCA 3 cut(s) 340, 655, 1606
BcoDI GTCTC 4 cut(s) 504, 670, 814, 1136
BfaI CTAG 3 cut(s) 689, 720, 1227
BfmI CTRYAG 2 cut(s) 574, 838
BfoI RGCGCY 1 cut(s) 1405
BfrI CTTAAG 2 cut(s) 524, 1475
BfuAI ACCTGC 2 cut(s) 478, 567
BfuI GTATCC 1 cut(s) 794
BisI GCNGC 5 cut(s) 92, 312, 625, 1262, 1425
BlpI GCTNAGC 2 cut(s) 177, 1428
BlsI GCNGC 5 cut(s) 93, 313, 626, 1263, 1426
Bme1390I CCNGG 3 cut(s) 378, 672, 972
BmeT110I CYCGRG 2 cut(s) 182, 437
BmgT120I GGNCC 1 cut(s) 1070
BmiI GGNNCC 5 cut(s) 41, 676, 731, 1403, 1561
BmrFI CCNGG 3 cut(s) 378, 672, 972
BmsI GCATC 4 cut(s) 1098, 1248, 1404, 1489
Bpu1102I GCTNAGC 2 cut(s) 177, 1428
BpuEI CTTGAG 1 cut(s) 1412
BsaAI YACGTR 1 cut(s) 1272
BsaHI GRCGYC 1 cut(s) 1402
BsaI GGTCTC 1 cut(s) 504
BsaJI CCNNGG 5 cut(s) 100, 377, 586, 670, 795
BsaWI WCCGGW 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 650, 680
Bsc4I CCNNNNNNNGG 1 cut(s) 495
Bse118I RCCGGY 2 cut(s) 196, 283
Bse1I ACTGG 5 cut(s) 129, 151, 489, 1073, 1566
Bse21I CCTNAGG 1 cut(s) 222
BseBI CCWGG 3 cut(s) 378, 672, 972
BseDI CCNNGG 5 cut(s) 100, 377, 586, 670, 795
BseGI GGATG 8 cut(s) 592, 1089, 1116, 1300, 1474, 1480, 1514, 1549
BseLI CCNNNNNNNGG 1 cut(s) 495
BseMII CTCAG 5 cut(s) 168, 236, 399, 801, 924
BseNI ACTGG 5 cut(s) 129, 151, 489, 1073, 1566
BseXI GCAGC 5 cut(s) 78, 323, 636, 1273, 1436
Bsh1285I CGRYCG 1 cut(s) 284
BshFI GGCC 4 cut(s) 591, 794, 895, 1072
BshNI GGYRCC 1 cut(s) 1401
BshTI ACCGGT 1 cut(s) 283
BsiEI CGRYCG 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 2 cut(s) 182, 437
BsiSI CCGG 2 cut(s) 197, 284
BslI CCNNNNNNNGG 1 cut(s) 495
BsmAI GTCTC 4 cut(s) 504, 670, 814, 1136
BsmBI CGTCTC 1 cut(s) 1136
BsmI GAATGC 1 cut(s) 876
BsnI GGCC 4 cut(s) 591, 794, 895, 1072
Bso31I GGTCTC 1 cut(s) 504
BsoBI CYCGRG 2 cut(s) 182, 437
Bsp1286I GDGCHC 3 cut(s) 183, 1195, 1646
Bsp1407I TGTACA 1 cut(s) 30
Bsp143I GATC 6 cut(s) 39, 117, 147, 340, 655, 1606
Bsp1720I GCTNAGC 2 cut(s) 177, 1428
Bsp19I CCATGG 2 cut(s) 100, 586
BspACI CCGC 2 cut(s) 1188, 1617
BspANI GGCC 4 cut(s) 591, 794, 895, 1072
BspCNI CTCAG 6 cut(s) 4, 169, 235, 398, 802, 923
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 5 cut(s) 41, 676, 731, 1403, 1561
BspMAI CTGCAG 1 cut(s) 578
BspMI ACCTGC 2 cut(s) 478, 567
BspPI GGATC 4 cut(s) 34, 47, 112, 142
BspT107I GGYRCC 1 cut(s) 1401
BspTI CTTAAG 2 cut(s) 524, 1475
BspTNI GGTCTC 1 cut(s) 504
BsrFI RCCGGY 2 cut(s) 196, 283
BsrGI TGTACA 1 cut(s) 30
BsrI ACTGG 5 cut(s) 129, 151, 489, 1073, 1566
BssAI RCCGGY 2 cut(s) 196, 283
BssECI CCNNGG 5 cut(s) 100, 377, 586, 670, 795
BssMI GATC 6 cut(s) 39, 117, 147, 340, 655, 1606
BssNI GRCGYC 1 cut(s) 1402
BssSI CACGAG 1 cut(s) 1194
BssT1I CCWWGG 2 cut(s) 100, 586
Bst2BI CACGAG 1 cut(s) 1194
Bst2UI CCWGG 3 cut(s) 378, 672, 972
Bst4CI ACNGT 7 cut(s) 275, 333, 458, 618, 1147, 1604, 1681
Bst6I CTCTTC 3 cut(s) 718, 792, 1100
BstACI GRCGYC 1 cut(s) 1402
BstAFI CTTAAG 2 cut(s) 524, 1475
BstAPI GCANNNNNTGC 3 cut(s) 206, 352, 433
BstAUI TGTACA 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 1272
BstC8I GCNNGC 6 cut(s) 107, 357, 509, 835, 988, 1380
BstDEI CTNAG 9 cut(s) 12, 177, 222, 385, 810, 910, 943, 1349, 1428
BstDSI CCRYGG 2 cut(s) 100, 586
BstF5I GGATG 8 cut(s) 592, 1089, 1116, 1300, 1474, 1480, 1514, 1549
BstH2I RGCGCY 1 cut(s) 1405
BstHHI GCGC 2 cut(s) 1340, 1404
BstKTI GATC 6 cut(s) 42, 120, 150, 343, 658, 1609
BstMAI GTCTC 4 cut(s) 504, 670, 814, 1136
BstMBI GATC 6 cut(s) 39, 117, 147, 340, 655, 1606
BstMCI CGRYCG 1 cut(s) 284
BstMWI GCNNNNNNNGC 3 cut(s) 206, 352, 433
BstNI CCWGG 3 cut(s) 378, 672, 972
BstSCI CCNGG 3 cut(s) 376, 670, 970
BstSFI CTRYAG 2 cut(s) 574, 838
BstV1I GCAGC 5 cut(s) 78, 323, 636, 1273, 1436
BstX2I RGATCY 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 824
BstYI RGATCY 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 222
BsuI GTATCC 1 cut(s) 794
BsuRI GGCC 4 cut(s) 591, 794, 895, 1072
BtgI CCRYGG 2 cut(s) 100, 586
BtsCI GGATG 8 cut(s) 592, 1089, 1116, 1300, 1474, 1480, 1514, 1549
BtsI GCAGTG 2 cut(s) 207, 350
BtsIMutI CAGTG 5 cut(s) 207, 350, 807, 1573, 1609
BveI ACCTGC 2 cut(s) 478, 567
Cac8I GCNNGC 6 cut(s) 107, 357, 509, 835, 988, 1380
CaiI CAGNNNCTG 3 cut(s) 206, 433, 971
CciI TCATGA 1 cut(s) 463
CfoI GCGC 2 cut(s) 1340, 1404
Cfr10I RCCGGY 2 cut(s) 196, 283
Cfr13I GGNCC 1 cut(s) 1070
CsiI ACCWGGT 1 cut(s) 970
Csp6I GTAC 5 cut(s) 31, 382, 580, 763, 1085
CspAI ACCGGT 1 cut(s) 283
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 9 cut(s) 101, 115, 464, 563, 587, 598, 824, 1291, 1493
CviQI GTAC 5 cut(s) 31, 382, 580, 763, 1085
DdeI CTNAG 9 cut(s) 12, 177, 222, 385, 810, 910, 943, 1349, 1428
DinI GGCGCC 1 cut(s) 1403
DpnI GATC 6 cut(s) 41, 119, 149, 342, 657, 1608
DpnII GATC 6 cut(s) 39, 117, 147, 340, 655, 1606
EaeI YGGCCR 1 cut(s) 589
Eam1104I CTCTTC 3 cut(s) 718, 792, 1100
EarI CTCTTC 3 cut(s) 718, 792, 1100
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 100, 586
Eco147I AGGCCT 1 cut(s) 895
Eco24I GRGCYC 3 cut(s) 183, 1195, 1646
Eco31I GGTCTC 1 cut(s) 504
Eco32I GATATC 1 cut(s) 931
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 773
Eco72I CACGTG 1 cut(s) 1272
Eco81I CCTNAGG 1 cut(s) 222
Eco88I CYCGRG 2 cut(s) 182, 437
EcoICRI GAGCTC 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 1508
EcoRII CCWGG 3 cut(s) 376, 670, 970
EcoRV GATATC 1 cut(s) 931
EcoT14I CCWWGG 2 cut(s) 100, 586
EcoT22I ATGCAT 1 cut(s) 1419
EcoT38I GRGCYC 3 cut(s) 183, 1195, 1646
EgeI GGCGCC 1 cut(s) 1403
EheI GGCGCC 1 cut(s) 1403
ErhI CCWWGG 2 cut(s) 100, 586
Esp3I CGTCTC 1 cut(s) 1136
FaeI CATG 9 cut(s) 104, 118, 467, 566, 590, 601, 827, 1294, 1496
FatI CATG 9 cut(s) 100, 114, 463, 562, 586, 597, 823, 1290, 1492
FauI CCCGC 1 cut(s) 1181
FbaI TGATCA 3 cut(s) 340, 655, 1606
Fnu4HI GCNGC 5 cut(s) 92, 312, 625, 1262, 1425
FokI GGATG 8 cut(s) 579, 1076, 1123, 1307, 1467, 1481, 1501, 1556
FriOI GRGCYC 3 cut(s) 183, 1195, 1646
Fsp4HI GCNGC 5 cut(s) 92, 312, 625, 1262, 1425
FspBI CTAG 3 cut(s) 689, 720, 1227
GlaI GCGC 2 cut(s) 1339, 1403
GluI GCNGC 5 cut(s) 92, 312, 625, 1262, 1425
HaeII RGCGCY 1 cut(s) 1405
HaeIII GGCC 4 cut(s) 591, 794, 895, 1072
HapII CCGG 2 cut(s) 197, 284
HhaI GCGC 2 cut(s) 1340, 1404
Hin1I GRCGYC 1 cut(s) 1402
Hin1II CATG 9 cut(s) 104, 118, 467, 566, 590, 601, 827, 1294, 1496
Hin6I GCGC 2 cut(s) 1338, 1402
HinP1I GCGC 2 cut(s) 1338, 1402
HincII GTYRAC 2 cut(s) 1100, 1237
HindII GTYRAC 2 cut(s) 1100, 1237
HindIII AAGCTT 3 cut(s) 505, 607, 851
HinfI GANTC 4 cut(s) 14, 389, 1171, 1301
HpaII CCGG 2 cut(s) 197, 284
HphI GGTGA 9 cut(s) 210, 238, 350, 968, 1117, 1159, 1216, 1304, 1310
Hpy166II GTNNAC 6 cut(s) 18, 31, 229, 278, 1100, 1237
Hpy188I TCNGA 9 cut(s) 13, 122, 247, 308, 388, 1008, 1252, 1306, 1411
Hpy188III TCNNGA 9 cut(s) 43, 464, 720, 993, 1079, 1484, 1541, 1610, 1637
Hpy8I GTNNAC 6 cut(s) 18, 31, 229, 278, 1100, 1237
HpyAV CCTTC 3 cut(s) 489, 1392, 1643
HpyCH4III ACNGT 7 cut(s) 275, 333, 458, 618, 1147, 1604, 1681
HpyCH4IV ACGT 2 cut(s) 660, 1271
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 352, 433
HpyF3I CTNAG 9 cut(s) 12, 177, 222, 385, 810, 910, 943, 1349, 1428
HpySE526I ACGT 2 cut(s) 660, 1271
Hsp92I GRCGYC 1 cut(s) 1402
Hsp92II CATG 9 cut(s) 104, 118, 467, 566, 590, 601, 827, 1294, 1496
HspAI GCGC 2 cut(s) 1338, 1402
KasI GGCGCC 1 cut(s) 1401
Ksp22I TGATCA 3 cut(s) 340, 655, 1606
Kzo9I GATC 6 cut(s) 39, 117, 147, 340, 655, 1606
LmnI GCTCC 3 cut(s) 308, 680, 1036
Lsp1109I GCAGC 5 cut(s) 78, 323, 636, 1273, 1436
LweI GCATC 4 cut(s) 1098, 1248, 1404, 1489
MabI ACCWGGT 1 cut(s) 970
MaeI CTAG 3 cut(s) 689, 720, 1227
MaeII ACGT 2 cut(s) 660, 1271
MaeIII GTNAC 2 cut(s) 110, 1123
MalI GATC 6 cut(s) 41, 119, 149, 342, 657, 1608
MboI GATC 6 cut(s) 39, 117, 147, 340, 655, 1606
MboII GAAGA 9 cut(s) 58, 77, 413, 735, 779, 880, 938, 1117, 1267
MfeI CAATTG 1 cut(s) 741
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 3 cut(s) 183, 1195, 1646
MlsI TGGCCA 1 cut(s) 591
MluNI TGGCCA 1 cut(s) 591
Mly113I GGCGCC 1 cut(s) 1402
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 3 cut(s) 145, 270, 1074
Mox20I TGGCCA 1 cut(s) 591
Mph1103I ATGCAT 1 cut(s) 1419
MroXI GAANNNNTTC 1 cut(s) 1358
MscI TGGCCA 1 cut(s) 591
MseI TTAA 6 cut(s) 162, 525, 1476, 1530, 1590, 1629
Msp20I TGGCCA 1 cut(s) 591
MspCI CTTAAG 2 cut(s) 524, 1475
MspI CCGG 2 cut(s) 197, 284
MspR9I CCNGG 3 cut(s) 378, 672, 972
MunI CAATTG 1 cut(s) 741
Mva1269I GAATGC 1 cut(s) 876
MvaI CCWGG 3 cut(s) 378, 672, 972
MwoI GCNNNNNNNGC 3 cut(s) 206, 352, 433
NarI GGCGCC 1 cut(s) 1402
NcoI CCATGG 2 cut(s) 100, 586
NdeII GATC 6 cut(s) 39, 117, 147, 340, 655, 1606
NlaIII CATG 9 cut(s) 104, 118, 467, 566, 590, 601, 827, 1294, 1496
NlaIV GGNNCC 5 cut(s) 41, 676, 731, 1403, 1561
NmeAIII GCCGAG 2 cut(s) 820, 1045
NmuCI GTSAC 2 cut(s) 110, 1123
NsiI ATGCAT 1 cut(s) 1419
PagI TCATGA 1 cut(s) 463
PceI AGGCCT 1 cut(s) 895
PcsI WCGNNNNNNNCGW 1 cut(s) 657
PctI GAATGC 1 cut(s) 876
PdmI GAANNNNTTC 1 cut(s) 1358
PfeI GAWTC 3 cut(s) 389, 1171, 1301
PinAI ACCGGT 1 cut(s) 283
PkrI GCNGC 5 cut(s) 93, 313, 626, 1263, 1426
PleI GAGTC 1 cut(s) 22
PluTI GGCGCC 1 cut(s) 1405
PmaCI CACGTG 1 cut(s) 1272
PmlI CACGTG 1 cut(s) 1272
PpsI GAGTC 1 cut(s) 22
Ppu21I YACGTR 1 cut(s) 1272
PshBI ATTAAT 1 cut(s) 1590
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 3 cut(s) 376, 670, 970
PspCI CACGTG 1 cut(s) 1272
PspGI CCWGG 3 cut(s) 376, 670, 970
PspN4I GGNNCC 5 cut(s) 41, 676, 731, 1403, 1561
PspPI GGNCC 1 cut(s) 1070
PstI CTGCAG 1 cut(s) 578
PstNI CAGNNNCTG 3 cut(s) 206, 433, 971
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 5 cut(s) 32, 383, 581, 764, 1086
RsaNI GTAC 5 cut(s) 31, 382, 580, 763, 1085
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 6 cut(s) 162, 525, 1476, 1530, 1590, 1629
SatI GCNGC 5 cut(s) 92, 312, 625, 1262, 1425
Sau3AI GATC 6 cut(s) 39, 117, 147, 340, 655, 1606
Sau96I GGNCC 1 cut(s) 1070
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 3 cut(s) 378, 672, 972
SduI GDGCHC 3 cut(s) 183, 1195, 1646
SexAI ACCWGGT 1 cut(s) 970
SfaNI GCATC 4 cut(s) 1098, 1248, 1404, 1489
SfcI CTRYAG 2 cut(s) 574, 838
SfoI GGCGCC 1 cut(s) 1403
SmlI CTYRAG 3 cut(s) 524, 1391, 1475
SmoI CTYRAG 3 cut(s) 524, 1391, 1475
SseBI AGGCCT 1 cut(s) 895
SsiI CCGC 2 cut(s) 1188, 1617
SspDI GGCGCC 1 cut(s) 1401
SspMI CTAG 3 cut(s) 689, 720, 1227
SstI GAGCTC 1 cut(s) 183
StuI AGGCCT 1 cut(s) 895
StyD4I CCNGG 3 cut(s) 376, 670, 970
StyI CCWWGG 2 cut(s) 100, 586
TaaI ACNGT 7 cut(s) 275, 333, 458, 618, 1147, 1604, 1681
TaiI ACGT 2 cut(s) 663, 1274
TaqI TCGA 5 cut(s) 493, 862, 994, 1386, 1463
TatI WGTACW 2 cut(s) 30, 762
TfiI GAWTC 3 cut(s) 389, 1171, 1301
Tru1I TTAA 6 cut(s) 162, 525, 1476, 1530, 1590, 1629
Tru9I TTAA 6 cut(s) 162, 525, 1476, 1530, 1590, 1629
TscAI CASTG 5 cut(s) 207, 357, 814, 1573, 1609
TseFI GTSAC 2 cut(s) 110, 1123
TseI GCWGC 5 cut(s) 91, 311, 624, 1261, 1424
Tsp45I GTSAC 2 cut(s) 110, 1123
TspDTI ATGAA 4 cut(s) 279, 480, 1279, 1351
TspGWI ACGGA 2 cut(s) 915, 1049
TspRI CASTG 5 cut(s) 207, 357, 814, 1573, 1609
Vha464I CTTAAG 2 cut(s) 524, 1475
VspI ATTAAT 1 cut(s) 1590
XapI RAATTY 2 cut(s) 515, 1508
XbaI TCTAGA 1 cut(s) 719
XmnI GAANNNNTTC 1 cut(s) 1358
XspI CTAG 3 cut(s) 689, 720, 1227
Zsp2I ATGCAT 1 cut(s) 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.