Rorug02G0453400

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000498
Physical Location & Seq
Reverse (-)
58287514 .. 58291590
4077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0453400.1

Sequence Viewer

Length: 711 bp
ATGTATATAGAGCTCGATCAATTAAGGGAAATGAGAGATCTGGGTAGGGAAGACTATAGAGATTGTAGCAGGTTATGCCGGGTTCAACTAAAAGGGTATCCCATTGGGTTAACTGGGTTAATGGGCTACTTGAGTAGGCCAGCTTGGCCAGAAGTGTTCAAATTGAGCGACTCCTTTATCACTGGAAATGAGGAAAACAAATATTATATGCAAAAAACTTTTGGCAACATTTTTCTGCTGCTGTCCCTTTGTCTGCTGCTCAATATTATCTTGGTTTTGTATTGTTATTCAGATTTGGGGAACAGTTTGCAGTCAGATTCCTTAACTGTTATTGATCCAGATATCAGGAACAGTGAGCTAACAAAATCTGCAAGTATTTTGAATTCAGTGATGGCACCAAAAACTATTATGAGAGGAACAAAGAGACTGTTACAGCAGTGTGATCCTGAGAGCTCTCATGGTGAAGAAAAAATTCGACAGATTAGATCAAAAAGATGGAAAGCAGATATAAATAATATTACCAGAAATTGTTGTTTATTTACAAATATGAGCCAATGTGTCACCCTCAAACTGCTGAAGTTCCGATTACAGAAGGTGGATATTCACATTCAATTGGTCAAGCATTCTATCAAAGAATCAGACAAGATTCTGGAGACAATATTTATAAATGTTCTTATTGCGATGCGTATTTCTGGTTTGAAGAAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST-HTH RRM_1 zf-CCCH

Protein Analysis

236

Amino Acids

27.28

Weight (kDa)

9.16

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05160 AT2G05160 AT2G05160
fragaria_vesca FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900
malus_domestica MD03G1188600.v1.1 MD09G1123600.v1.1 MD17G1114400.v1.1
prunus_persica Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1
pyrus_communis pycom03g14150 pycom09g04760 pycom17g10570
rosa_chinensis RchiOBHm_Chr2g0156481 RchiOBHm_Chr5g0042651
rosa_laevigata RLG00000020916 RLG00000034148
rosa_multiflora Rmu_sc0004355.1_g000004 Rmu_sc0005392.1_g000010
rosa_roxburghii Rroxscaffold_1G00037990 Rroxscaffold_2G00093000
rosa_rugosa Rorug02G0453300 Rorug02G0453400 Rorug02G0453500 Rorug02G0453600 Rorug05G0203500 Rorug05G0203500 Rorug05G0203600.1 Rorug05G0203700
rosa_samantha Rh2AG519700 Rh2BG532000 Rh2CG504700 Rh2DG541000 Rh5AG288800 Rh5BG292900 Rh5CG325300 Rh5DG302800
rosa_wichuraiana Rw2G042840 Rw5G026790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 665
Acc36I ACCTGC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 394
AclWI GGATC 2 cut(s) 329, 437
AcoI YGGCCR 1 cut(s) 146
AcsI RAATTY 2 cut(s) 382, 471
AcuI CTGAAG 1 cut(s) 596
AgsI TTSAA 5 cut(s) 86, 160, 382, 611, 700
AluBI AGCT 5 cut(s) 13, 143, 358, 453, 706
AluI AGCT 5 cut(s) 13, 143, 358, 453, 706
Alw21I GWGCWC 2 cut(s) 15, 455
Alw26I GTCTC 2 cut(s) 418, 647
AlwI GGATC 2 cut(s) 329, 437
AoxI GGCC 2 cut(s) 137, 146
ApeKI GCWGC 2 cut(s) 238, 256
ApoI RAATTY 2 cut(s) 382, 471
Asp700I GAANNNNTTC 1 cut(s) 471
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 473, 553
BalI TGGCCA 1 cut(s) 148
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 2 cut(s) 15, 455
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 15, 455
BbvI GCAGC 2 cut(s) 225, 243
BccI CCATC 2 cut(s) 385, 489
BciVI GTATCC 1 cut(s) 108
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 418, 647
BfmI CTRYAG 1 cut(s) 55
BfuAI ACCTGC 1 cut(s) 60
BfuI GTATCC 1 cut(s) 108
BglI GCCNNNNNGGC 1 cut(s) 145
BglII AGATCT 1 cut(s) 37
BisI GCNGC 2 cut(s) 239, 257
BlsI GCNGC 2 cut(s) 240, 258
Bme1390I CCNGG 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 1 cut(s) 80
BmrI ACTGGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 672
BmuI ACTGGG 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 671
BpuEI CTTGAG 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 118, 187
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 2 cut(s) 118, 187
BseXI GCAGC 2 cut(s) 225, 243
BshFI GGCC 2 cut(s) 139, 148
BshNI GGYRCC 1 cut(s) 394
BsiHKAI GWGCWC 2 cut(s) 15, 455
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 418, 647
BsmFI GGGAC 1 cut(s) 229
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 2 cut(s) 139, 148
Bsp1286I GDGCHC 2 cut(s) 15, 455
Bsp143I GATC 5 cut(s) 16, 37, 334, 442, 485
BspANI GGCC 2 cut(s) 139, 148
BspCNI CTCAG 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 60
BspPI GGATC 2 cut(s) 329, 437
BspT107I GGYRCC 1 cut(s) 394
BsrI ACTGG 2 cut(s) 118, 187
BssMI GATC 5 cut(s) 16, 37, 334, 442, 485
Bst4CI ACNGT 4 cut(s) 305, 328, 353, 429
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 447
BstKTI GATC 5 cut(s) 19, 40, 337, 445, 488
BstMAI GTCTC 2 cut(s) 418, 647
BstMBI GATC 5 cut(s) 16, 37, 334, 442, 485
BstMWI GCNNNNNNNGC 2 cut(s) 75, 145
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 225, 243
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 1 cut(s) 108
BsuRI GGCC 2 cut(s) 139, 148
BtgZI GCGATG 1 cut(s) 695
BtsI GCAGTG 1 cut(s) 443
BtsIMutI CAGTG 4 cut(s) 180, 358, 393, 443
BveI ACCTGC 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 141
CviAII CATG 1 cut(s) 458
CviJI RGCY 9 cut(s) 13, 126, 139, 143, 148, 358, 453, 552, 706
CviKI_1 RGCY 9 cut(s) 13, 126, 139, 143, 148, 358, 453, 552, 706
DdeI CTNAG 1 cut(s) 447
DpnI GATC 5 cut(s) 18, 39, 336, 444, 487
DpnII GATC 5 cut(s) 16, 37, 334, 442, 485
EaeI YGGCCR 1 cut(s) 146
Ecl136II GAGCTC 2 cut(s) 13, 453
Eco24I GRGCYC 2 cut(s) 15, 455
Eco32I GATATC 1 cut(s) 343
Eco53kI GAGCTC 2 cut(s) 13, 453
Eco57I CTGAAG 1 cut(s) 596
EcoICRI GAGCTC 2 cut(s) 13, 453
EcoRI GAATTC 1 cut(s) 382
EcoRV GATATC 1 cut(s) 343
EcoT38I GRGCYC 2 cut(s) 15, 455
FaeI CATG 1 cut(s) 461
FaqI GGGAC 1 cut(s) 229
FatI CATG 1 cut(s) 457
Fnu4HI GCNGC 2 cut(s) 239, 257
FriOI GRGCYC 2 cut(s) 15, 455
Fsp4HI GCNGC 2 cut(s) 239, 257
GluI GCNGC 2 cut(s) 239, 257
GsuI CTGGAG 1 cut(s) 671
HaeIII GGCC 2 cut(s) 139, 148
HapII CCGG 1 cut(s) 79
Hin1II CATG 1 cut(s) 461
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 4 cut(s) 170, 317, 635, 646
HpaI GTTAAC 1 cut(s) 111
HpaII CCGG 1 cut(s) 79
HphI GGTGA 2 cut(s) 473, 553
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 4 cut(s) 292, 316, 584, 640
Hpy188III TCNNGA 4 cut(s) 338, 346, 446, 650
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 4 cut(s) 305, 328, 353, 429
HpyCH4V TGCA 3 cut(s) 211, 310, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 145
HpyF3I CTNAG 1 cut(s) 447
Hsp92II CATG 1 cut(s) 461
KspAI GTTAAC 1 cut(s) 111
Kzo9I GATC 5 cut(s) 16, 37, 334, 442, 485
Lsp1109I GCAGC 2 cut(s) 225, 243
LweI GCATC 1 cut(s) 672
MaeIII GTNAC 2 cut(s) 429, 559
MalI GATC 5 cut(s) 18, 39, 336, 444, 487
MboI GATC 5 cut(s) 16, 37, 334, 442, 485
MboII GAAGA 2 cut(s) 62, 476
MfeI CAATTG 1 cut(s) 611
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 15, 455
MlsI TGGCCA 1 cut(s) 148
MluCI AATT 6 cut(s) 20, 161, 382, 471, 526, 611
MluNI TGGCCA 1 cut(s) 148
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 3 cut(s) 184, 407, 575
Mox20I TGGCCA 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 471
MscI TGGCCA 1 cut(s) 148
MseI TTAA 4 cut(s) 23, 110, 119, 323
Msp20I TGGCCA 1 cut(s) 148
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 80
MunI CAATTG 1 cut(s) 611
Mva1269I GAATGC 1 cut(s) 622
MwoI GCNNNNNNNGC 2 cut(s) 75, 145
NciI CCSGG 1 cut(s) 80
NdeII GATC 5 cut(s) 16, 37, 334, 442, 485
NlaIII CATG 1 cut(s) 461
NlaIV GGNNCC 1 cut(s) 396
NmuCI GTSAC 1 cut(s) 559
PctI GAATGC 1 cut(s) 622
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 3 cut(s) 317, 635, 646
PkrI GCNGC 2 cut(s) 240, 258
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PsiI TTATAA 1 cut(s) 665
Psp124BI GAGCTC 2 cut(s) 15, 455
PspN4I GGNNCC 1 cut(s) 396
PsuI RGATCY 1 cut(s) 37
SacI GAGCTC 2 cut(s) 15, 455
SaqAI TTAA 4 cut(s) 23, 110, 119, 323
SatI GCNGC 2 cut(s) 239, 257
Sau3AI GATC 5 cut(s) 16, 37, 334, 442, 485
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 2 cut(s) 15, 455
SetI ASST 7 cut(s) 15, 74, 145, 360, 455, 597, 708
SfaNI GCATC 1 cut(s) 672
SfcI CTRYAG 1 cut(s) 55
SfiI GGCCNNNNNGGCC 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 6 cut(s) 20, 161, 382, 471, 526, 611
SspI AATATT 4 cut(s) 203, 265, 517, 660
SstI GAGCTC 2 cut(s) 15, 455
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 4 cut(s) 305, 328, 353, 429
TaqI TCGA 2 cut(s) 15, 475
TasI AATT 6 cut(s) 20, 161, 382, 471, 526, 611
TfiI GAWTC 3 cut(s) 317, 635, 646
Tru1I TTAA 4 cut(s) 23, 110, 119, 323
Tru9I TTAA 4 cut(s) 23, 110, 119, 323
TscAI CASTG 4 cut(s) 187, 358, 393, 443
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 2 cut(s) 238, 256
Tsp45I GTSAC 1 cut(s) 559
TspRI CASTG 4 cut(s) 187, 358, 393, 443
XapI RAATTY 2 cut(s) 382, 471
XmnI GAANNNNTTC 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.