RLG00000020916

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000498
Physical Location & Seq
Reverse (-)
70109163 .. 70113130
3968 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020916

Sequence Viewer

Length: 1785 bp
ATGGGTATGGAGGAAGAAAAATTAAAATGGTTCAGCTTTCTGAAGAATTGTTTCCCAGGGAAGAACATGTCTTCTGGGTTGCGATCTGAAATGGATTTTTCAGAGTCCACAAAAGTAGTGTACAATAGGATCCAGAAGCTAGAGCCTGAAAATGTCTCTAAGATAATTGGCTATCTTCTGCTGCAAGACAATGGGGAGCGTGACATGATCCGGCTGGCTTTCAGCCCCGATAATTTGATCCAGTCTTTGATTAATAAGGCGAAAACCGAGCTATGCAAACATGCAGTGTCGTCTCCAATCTCACCTCCTCAGGTGAACCAAGTGGCTGTCTCGGACCTGCCTTTGCAATTCACTCCCTACTCTCCGAGTTTAACAAGACCGATTTCATGTCCCACAACTCTTGGAGCAGCAAATCCATTTAGTAGGGAGGCCCAAGTGCCTGGTGATCAGCAACCACTGCAAGCTGTAGACTTTATTCCACCAGGGTACTCAGATTCAGCTGCTGAAGATTATTGCCTCCAGAGTCAACAAATGCAGTTTCTGCCAGACTTTTCAAGCAATTTCTGCTATCATGAACCTGCATTGGGTGTGAGGAGTCGAAGGTCTCCGAGCTTGCCTGAGTTTCCTCTTAAGGTTTGCCATTACTTCAGTAAGGGCTTTTGCAAGCATGGAAACAACTGCAGATACTTCCATGGCCACCCCATGCCAGAGAGCTTTTCACAGTTTTTCTGCCCAAATTCAAATGTGCATCAAAGCGATGACCATGTTGTCTCTCCTGGCTCCCTTGAGAAGCTAGAGTATGAAATAATTGAGCTTCTGAAATCTCGAAGAGGGTTTCCAATATCTATTGCCTCTTTGCCAATGATGTATTATGAGAAATATGGGAGGACTCTTCAGGCCGAGGGGTACCTTACTGAGAGCCAGAGACATGGTAAGGCTGGCTATAGCCTCACAAAGCTTCTTGCTAGATTGAAAAACAGCATTCGTCTCATTGATCGGCCTCATGGACAGCACTCAGTTATATTGGCTGAAGATATTCCAAAATACTTGGAGTATACTGGCGAGAAAACTGAACCTGGTGGAATTATCGCTGGTTCTCGACAGATTTATCTCACTTTTCCAGCTGAGAGTAATTTCACTGAGCAAGATGTTTCTAACTATTTCAACAAATATGGGCCAGTTCAAGATGTGCGCATCCCATGCCAGCAGAAGAGGATGTTTGGGTTTGTCACCTTTCTTTATGCAGACACGGTGAGACATATTTTGTCAAAAGGGAATCCTCATTTTGTATGCGGGGCTCGAGTTCTGGTGAAACCTTACAGGGAAAAGTCTAGGCTTGTTGACAGGAAGTTTTCAGACAAGATGCAGCATTCTCCATGCTACAATTCACATTACATTGATGCGGATGCAGAGCTTCACTCCATGCCAAGAGTTTGTGACAGTTCAAGATTGCTAAGAAAGCAATTCATAGAAGAGCATGAGCAGGCACTTGAGTGTGAGAGAAGACGTCGCTCAGAAATGCACTTAGCAGCCAAGCCCTTGTCCCATCATCATCTCTATTATGGCTACTCCATGGATGAATTCAATCATCCAGAAGCTCATGCAGAACAAGCTGATTTCGCATCCGCGAAGGAATTTAACATTTTGCTGGATGCTTGGAATAATGGTTCCACCAGTGAGGACAAAATTCGACACATAAACACTAATTACATTGACCACCAGGATAGCCAAGGTATTATCCTCCCAGAGAGCCCATTCGCATCTGCAATATCAACAGTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST-HTH RRM_1 zf-CCCH

Protein Analysis

595

Amino Acids

67.74

Weight (kDa)

6.68

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PABC_AtC3H46 PF23182 31 - 91 4.3e-33 AtC3H46 PABC domain
RRM_1 PF00076 378 - 426 1.6e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05160 AT2G05160 AT2G05160
fragaria_vesca FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900
malus_domestica MD03G1188600.v1.1 MD09G1123600.v1.1 MD17G1114400.v1.1
prunus_persica Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1
pyrus_communis pycom03g14150 pycom09g04760 pycom17g10570
rosa_chinensis RchiOBHm_Chr2g0156481 RchiOBHm_Chr5g0042651
rosa_laevigata RLG00000020916 RLG00000034148
rosa_multiflora Rmu_sc0004355.1_g000004 Rmu_sc0005392.1_g000010
rosa_roxburghii Rroxscaffold_1G00037990 Rroxscaffold_2G00093000
rosa_rugosa Rorug02G0453300 Rorug02G0453400 Rorug02G0453500 Rorug02G0453600 Rorug05G0203500 Rorug05G0203500 Rorug05G0203600.1 Rorug05G0203700
rosa_samantha Rh2AG519700 Rh2BG532000 Rh2CG504700 Rh2DG541000 Rh5AG288800 Rh5BG292900 Rh5CG325300 Rh5DG302800
rosa_wichuraiana Rw2G042840 Rw5G026790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 767
AatII GACGTC 1 cut(s) 1510
Acc16I TGCGCA 1 cut(s) 1193
Acc36I ACCTGC 2 cut(s) 345, 586
Acc65I GGTACC 1 cut(s) 906
AccB1I GGYRCC 1 cut(s) 906
AccI GTMKAC 2 cut(s) 468, 1055
AccII CGCG 1 cut(s) 1628
AciI CCGC 3 cut(s) 1293, 1403, 1626
AclWI GGATC 4 cut(s) 124, 137, 202, 232
AcoI YGGCCR 1 cut(s) 694
AcsI RAATTY 4 cut(s) 736, 1580, 1634, 1686
AcuI CTGAAG 5 cut(s) 62, 525, 631, 878, 1050
AcyI GRCGYC 1 cut(s) 1507
AfaI GTAC 3 cut(s) 122, 488, 908
AfiI CCNNNNNNNGG 1 cut(s) 584
AflII CTTAAG 1 cut(s) 629
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 7 cut(s) 555, 741, 973, 1165, 1184, 1446, 1585
AjnI CCWGG 6 cut(s) 55, 439, 481, 775, 1075, 1719
AleI CACNNNNGTG 1 cut(s) 1492
AloI GAACNNNNNNTCC 2 cut(s) 1651, 1683
Alw26I GTCTC 8 cut(s) 160, 297, 334, 609, 775, 919, 992, 1249
AlwI GGATC 4 cut(s) 124, 137, 202, 232
AlwNI CAGNNNCTG 2 cut(s) 503, 541
Ama87I CYCGRG 1 cut(s) 1299
AoxI GGCC 5 cut(s) 429, 694, 897, 998, 1175
ApeKI GCWGC 5 cut(s) 181, 407, 500, 1366, 1529
ApoI RAATTY 4 cut(s) 736, 1580, 1634, 1686
AseI ATTAAT 1 cut(s) 252
Asp700I GAANNNNTTC 2 cut(s) 50, 1035
Asp718I GGTACC 1 cut(s) 906
AspLEI GCGC 1 cut(s) 1194
AspS9I GGNCC 3 cut(s) 334, 430, 1175
AsuHPI GGTGA 6 cut(s) 294, 325, 455, 1222, 1264, 1321
AvaI CYCGRG 1 cut(s) 1299
AvaII GGWCC 1 cut(s) 334
AxyI CCTNAGG 1 cut(s) 309
BalI TGGCCA 1 cut(s) 696
BamHI GGATCC 1 cut(s) 129
BanI GGYRCC 1 cut(s) 906
BanII GRGCYC 2 cut(s) 1300, 1754
BbsI GAAGAC 2 cut(s) 63, 1510
BbvI GCAGC 5 cut(s) 168, 419, 487, 1378, 1541
BccI CCATC 1 cut(s) 1554
BciT130I CCWGG 6 cut(s) 57, 441, 483, 777, 1077, 1721
BclI TGATCA 1 cut(s) 445
BcoDI GTCTC 8 cut(s) 160, 297, 334, 609, 775, 919, 992, 1249
BfaI CTAG 4 cut(s) 140, 794, 966, 1332
BfmI CTRYAG 3 cut(s) 465, 679, 943
BfrI CTTAAG 1 cut(s) 629
BfuAI ACCTGC 2 cut(s) 345, 586
BisI GCNGC 5 cut(s) 182, 408, 501, 1367, 1530
BlsI GCNGC 5 cut(s) 183, 409, 502, 1368, 1531
Bme1390I CCNGG 6 cut(s) 57, 441, 483, 777, 1077, 1721
Bme18I GGWCC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 1299
BmgT120I GGNCC 3 cut(s) 334, 430, 1175
BmiI GGNNCC 4 cut(s) 131, 781, 908, 1669
BmrFI CCNGG 6 cut(s) 57, 441, 483, 777, 1077, 1721
BmsI GCATC 8 cut(s) 757, 1203, 1353, 1390, 1396, 1631, 1642, 1769
BpiI GAAGAC 2 cut(s) 63, 1510
BplI GAGNNNNNCTC 2 cut(s) 1403, 1435
BpmI CTGGAG 1 cut(s) 503
BpuEI CTTGAG 2 cut(s) 806, 1511
BsaHI GRCGYC 1 cut(s) 1507
BsaI GGTCTC 1 cut(s) 609
BsaJI CCNNGG 7 cut(s) 55, 56, 482, 691, 900, 1572, 1729
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse1I ACTGG 4 cut(s) 241, 1063, 1178, 1674
Bse21I CCTNAGG 1 cut(s) 309
BseBI CCWGG 6 cut(s) 57, 441, 483, 777, 1077, 1721
BseDI CCNNGG 7 cut(s) 55, 56, 482, 691, 900, 1572, 1729
BseGI GGATG 7 cut(s) 1194, 1221, 1411, 1582, 1588, 1622, 1657
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMII CTCAG 8 cut(s) 323, 504, 609, 906, 1029, 1116, 1131, 1527
BseNI ACTGG 4 cut(s) 241, 1063, 1178, 1674
BseRI GAGGAG 2 cut(s) 297, 607
BseXI GCAGC 5 cut(s) 168, 419, 487, 1378, 1541
Bsh1236I CGCG 1 cut(s) 1628
BshFI GGCC 5 cut(s) 431, 696, 899, 1000, 1177
BshNI GGYRCC 1 cut(s) 906
BsiHKCI CYCGRG 1 cut(s) 1299
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 2 cut(s) 375, 1528
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 8 cut(s) 160, 297, 334, 609, 775, 919, 992, 1249
BsmBI CGTCTC 2 cut(s) 297, 992
BsmFI GGGAC 2 cut(s) 375, 1528
BsmI GAATGC 2 cut(s) 981, 1369
BsnI GGCC 5 cut(s) 431, 696, 899, 1000, 1177
Bso31I GGTCTC 1 cut(s) 609
BsoBI CYCGRG 1 cut(s) 1299
Bsp1286I GDGCHC 2 cut(s) 1300, 1754
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 6 cut(s) 83, 129, 207, 237, 445, 994
Bsp19I CCATGG 2 cut(s) 691, 1572
BspACI CCGC 3 cut(s) 1293, 1403, 1626
BspANI GGCC 5 cut(s) 431, 696, 899, 1000, 1177
BspCNI CTCAG 8 cut(s) 322, 503, 610, 907, 1028, 1117, 1132, 1526
BspFNI CGCG 1 cut(s) 1628
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 4 cut(s) 131, 781, 908, 1669
BspMAI CTGCAG 1 cut(s) 683
BspMI ACCTGC 2 cut(s) 345, 586
BspPI GGATC 4 cut(s) 124, 137, 202, 232
BspQI GCTCTTC 1 cut(s) 1467
BspT107I GGYRCC 1 cut(s) 906
BspTI CTTAAG 1 cut(s) 629
BspTNI GGTCTC 1 cut(s) 609
BsrGI TGTACA 1 cut(s) 120
BsrI ACTGG 4 cut(s) 241, 1063, 1178, 1674
BssECI CCNNGG 7 cut(s) 55, 56, 482, 691, 900, 1572, 1729
BssMI GATC 6 cut(s) 83, 129, 207, 237, 445, 994
BssNAI GTATAC 1 cut(s) 1056
BssNI GRCGYC 1 cut(s) 1507
BssT1I CCWWGG 3 cut(s) 691, 1572, 1729
Bst1107I GTATAC 1 cut(s) 1056
Bst2UI CCWGG 6 cut(s) 57, 441, 483, 777, 1077, 1721
Bst4CI ACNGT 4 cut(s) 723, 1252, 1442, 1777
Bst6I CTCTTC 4 cut(s) 823, 897, 1205, 1467
BstACI GRCGYC 1 cut(s) 1507
BstAFI CTTAAG 1 cut(s) 629
BstAPI GCANNNNNTGC 4 cut(s) 457, 541, 564, 1200
BstAUI TGTACA 1 cut(s) 120
BstC8I GCNNGC 7 cut(s) 216, 462, 614, 665, 940, 1205, 1485
BstDSI CCRYGG 2 cut(s) 691, 1572
BstF5I GGATG 7 cut(s) 1194, 1221, 1411, 1582, 1588, 1622, 1657
BstFNI CGCG 1 cut(s) 1628
BstHHI GCGC 1 cut(s) 1194
BstKTI GATC 6 cut(s) 86, 132, 210, 240, 448, 997
BstMAI GTCTC 8 cut(s) 160, 297, 334, 609, 775, 919, 992, 1249
BstMBI GATC 6 cut(s) 83, 129, 207, 237, 445, 994
BstMWI GCNNNNNNNGC 7 cut(s) 457, 541, 564, 1200, 1459, 1610, 1619
BstNI CCWGG 6 cut(s) 57, 441, 483, 777, 1077, 1721
BstNSI RCATGY 2 cut(s) 70, 284
BstSCI CCNGG 6 cut(s) 55, 439, 481, 775, 1075, 1719
BstSFI CTRYAG 3 cut(s) 465, 679, 943
BstUI CGCG 1 cut(s) 1628
BstV1I GCAGC 5 cut(s) 168, 419, 487, 1378, 1541
BstV2I GAAGAC 2 cut(s) 63, 1510
BstX2I RGATCY 1 cut(s) 129
BstXI CCANNNNNNTGG 2 cut(s) 440, 929
BstYI RGATCY 1 cut(s) 129
BstZ17I GTATAC 1 cut(s) 1056
Bsu36I CCTNAGG 1 cut(s) 309
BsuRI GGCC 5 cut(s) 431, 696, 899, 1000, 1177
BtgI CCRYGG 2 cut(s) 691, 1572
BtgZI GCGATG 1 cut(s) 771
BtsCI GGATG 7 cut(s) 1194, 1221, 1411, 1582, 1588, 1622, 1657
BtsI GCAGTG 2 cut(s) 291, 455
BtsIMutI CAGTG 4 cut(s) 291, 455, 1137, 1681
BveI ACCTGC 2 cut(s) 345, 586
Cac8I GCNNGC 7 cut(s) 216, 462, 614, 665, 940, 1205, 1485
CaiI CAGNNNCTG 2 cut(s) 503, 541
CciI TCATGA 1 cut(s) 571
CfoI GCGC 1 cut(s) 1194
Cfr13I GGNCC 3 cut(s) 334, 430, 1175
CsiI ACCWGGT 1 cut(s) 1075
Csp6I GTAC 3 cut(s) 121, 487, 907
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviQI GTAC 3 cut(s) 121, 487, 907
DpnI GATC 6 cut(s) 85, 131, 209, 239, 447, 996
DpnII GATC 6 cut(s) 83, 129, 207, 237, 445, 994
DrdI GACNNNNNNGTC 1 cut(s) 767
DseDI GACNNNNNNGTC 1 cut(s) 767
EaeI YGGCCR 1 cut(s) 694
Eam1104I CTCTTC 4 cut(s) 823, 897, 1205, 1467
EarI CTCTTC 4 cut(s) 823, 897, 1205, 1467
Eco130I CCWWGG 3 cut(s) 691, 1572, 1729
Eco24I GRGCYC 2 cut(s) 1300, 1754
Eco31I GGTCTC 1 cut(s) 609
Eco47I GGWCC 1 cut(s) 334
Eco57I CTGAAG 5 cut(s) 62, 525, 631, 878, 1050
Eco81I CCTNAGG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 1299
EcoRI GAATTC 1 cut(s) 1580
EcoRII CCWGG 6 cut(s) 55, 439, 481, 775, 1075, 1719
EcoT14I CCWWGG 3 cut(s) 691, 1572, 1729
EcoT38I GRGCYC 2 cut(s) 1300, 1754
ErhI CCWWGG 3 cut(s) 691, 1572, 1729
Esp3I CGTCTC 2 cut(s) 297, 992
FaqI GGGAC 2 cut(s) 375, 1528
FauI CCCGC 1 cut(s) 1286
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 2 cut(s) 468, 1055
Fnu4HI GCNGC 5 cut(s) 182, 408, 501, 1367, 1530
FokI GGATG 7 cut(s) 1181, 1228, 1418, 1575, 1589, 1609, 1664
FriOI GRGCYC 2 cut(s) 1300, 1754
Fsp4HI GCNGC 5 cut(s) 182, 408, 501, 1367, 1530
FspAI RTGCGCAY 1 cut(s) 1193
FspBI CTAG 4 cut(s) 140, 794, 966, 1332
FspI TGCGCA 1 cut(s) 1193
GlaI GCGC 1 cut(s) 1193
GluI GCNGC 5 cut(s) 182, 408, 501, 1367, 1530
GsuI CTGGAG 1 cut(s) 503
HaeIII GGCC 5 cut(s) 431, 696, 899, 1000, 1177
HapII CCGG 1 cut(s) 211
HhaI GCGC 1 cut(s) 1194
Hin1I GRCGYC 1 cut(s) 1507
Hin6I GCGC 1 cut(s) 1192
HinP1I GCGC 1 cut(s) 1192
HincII GTYRAC 2 cut(s) 527, 1342
HindII GTYRAC 2 cut(s) 527, 1342
HindIII AAGCTT 1 cut(s) 956
HinfI GANTC 6 cut(s) 104, 494, 523, 595, 889, 1276
HpaII CCGG 1 cut(s) 211
HphI GGTGA 6 cut(s) 294, 325, 455, 1222, 1264, 1321
Hpy166II GTNNAC 7 cut(s) 108, 121, 316, 469, 527, 1056, 1342
Hpy188III TCNNGA 8 cut(s) 133, 520, 572, 825, 1098, 1184, 1446, 1592
Hpy8I GTNNAC 7 cut(s) 108, 121, 316, 469, 527, 1056, 1342
Hpy99I CGWCG 1 cut(s) 1512
HpyAV CCTTC 2 cut(s) 594, 1624
HpyCH4III ACNGT 4 cut(s) 723, 1252, 1442, 1777
HpyCH4IV ACGT 1 cut(s) 1507
HpyF10VI GCNNNNNNNGC 7 cut(s) 457, 541, 564, 1200, 1459, 1610, 1619
HpySE526I ACGT 1 cut(s) 1507
Hsp92I GRCGYC 1 cut(s) 1507
HspAI GCGC 1 cut(s) 1192
KpnI GGTACC 1 cut(s) 910
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 6 cut(s) 83, 129, 207, 237, 445, 994
LguI GCTCTTC 1 cut(s) 1467
LmnI GCTCC 3 cut(s) 196, 404, 785
Lsp1109I GCAGC 5 cut(s) 168, 419, 487, 1378, 1541
LweI GCATC 8 cut(s) 757, 1203, 1353, 1390, 1396, 1631, 1642, 1769
MabI ACCWGGT 1 cut(s) 1075
MaeI CTAG 4 cut(s) 140, 794, 966, 1332
MaeII ACGT 1 cut(s) 1507
MaeIII GTNAC 3 cut(s) 200, 1228, 1436
MalI GATC 6 cut(s) 85, 131, 209, 239, 447, 996
MboI GATC 6 cut(s) 83, 129, 207, 237, 445, 994
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 2 cut(s) 1300, 1754
MlsI TGGCCA 1 cut(s) 696
MluNI TGGCCA 1 cut(s) 696
MlyI GAGTC 4 cut(s) 113, 532, 604, 883
Mox20I TGGCCA 1 cut(s) 696
MroXI GAANNNNTTC 2 cut(s) 50, 1035
MscI TGGCCA 1 cut(s) 696
MseI TTAA 5 cut(s) 23, 252, 371, 630, 1638
MslI CAYNNNNRTG 1 cut(s) 1492
Msp20I TGGCCA 1 cut(s) 696
MspA1I CMGCKG 2 cut(s) 500, 1124
MspCI CTTAAG 1 cut(s) 629
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 6 cut(s) 57, 441, 483, 777, 1077, 1721
Mva1269I GAATGC 2 cut(s) 981, 1369
MvaI CCWGG 6 cut(s) 57, 441, 483, 777, 1077, 1721
MvnI CGCG 1 cut(s) 1628
MwoI GCNNNNNNNGC 7 cut(s) 457, 541, 564, 1200, 1459, 1610, 1619
NcoI CCATGG 2 cut(s) 691, 1572
NdeII GATC 6 cut(s) 83, 129, 207, 237, 445, 994
NlaIV GGNNCC 4 cut(s) 131, 781, 908, 1669
NmeAIII GCCGAG 1 cut(s) 925
NmuCI GTSAC 3 cut(s) 200, 1228, 1436
NsbI TGCGCA 1 cut(s) 1193
NspI RCATGY 2 cut(s) 70, 284
OliI CACNNNNGTG 1 cut(s) 1492
PaeR7I CTCGAG 1 cut(s) 1299
PagI TCATGA 1 cut(s) 571
PasI CCCWGGG 1 cut(s) 56
PciI ACATGT 1 cut(s) 66
PciSI GCTCTTC 1 cut(s) 1467
PctI GAATGC 2 cut(s) 981, 1369
PdmI GAANNNNTTC 2 cut(s) 50, 1035
PfeI GAWTC 2 cut(s) 494, 1276
PkrI GCNGC 5 cut(s) 183, 409, 502, 1368, 1531
PleI GAGTC 4 cut(s) 112, 531, 603, 883
PpsI GAGTC 4 cut(s) 112, 531, 603, 883
PscI ACATGT 1 cut(s) 66
PshBI ATTAAT 1 cut(s) 252
Psp6I CCWGG 6 cut(s) 55, 439, 481, 775, 1075, 1719
PspGI CCWGG 6 cut(s) 55, 439, 481, 775, 1075, 1719
PspN4I GGNNCC 4 cut(s) 131, 781, 908, 1669
PspPI GGNCC 3 cut(s) 334, 430, 1175
PspXI VCTCGAGB 1 cut(s) 1299
PstI CTGCAG 1 cut(s) 683
PstNI CAGNNNCTG 2 cut(s) 503, 541
PsuI RGATCY 1 cut(s) 129
PvuII CAGCTG 2 cut(s) 500, 1124
RsaI GTAC 3 cut(s) 122, 488, 908
RsaNI GTAC 3 cut(s) 121, 487, 907
RseI CAYNNNNRTG 1 cut(s) 1492
SapI GCTCTTC 1 cut(s) 1467
SaqAI TTAA 5 cut(s) 23, 252, 371, 630, 1638
SatI GCNGC 5 cut(s) 182, 408, 501, 1367, 1530
Sau3AI GATC 6 cut(s) 83, 129, 207, 237, 445, 994
Sau96I GGNCC 3 cut(s) 334, 430, 1175
SchI GAGTC 4 cut(s) 113, 532, 604, 883
ScrFI CCNGG 6 cut(s) 57, 441, 483, 777, 1077, 1721
SduI GDGCHC 2 cut(s) 1300, 1754
SexAI ACCWGGT 1 cut(s) 1075
SfaNI GCATC 8 cut(s) 757, 1203, 1353, 1390, 1396, 1631, 1642, 1769
SfcI CTRYAG 3 cut(s) 465, 679, 943
Sfr274I CTCGAG 1 cut(s) 1299
SinI GGWCC 1 cut(s) 334
SlaI CTCGAG 1 cut(s) 1299
SmiMI CAYNNNNRTG 1 cut(s) 1492
SmlI CTYRAG 4 cut(s) 629, 785, 1299, 1490
SmoI CTYRAG 4 cut(s) 629, 785, 1299, 1490
SsiI CCGC 3 cut(s) 1293, 1403, 1626
SspMI CTAG 4 cut(s) 140, 794, 966, 1332
StyD4I CCNGG 6 cut(s) 55, 439, 481, 775, 1075, 1719
StyI CCWWGG 3 cut(s) 691, 1572, 1729
TaaI ACNGT 4 cut(s) 723, 1252, 1442, 1777
TaiI ACGT 1 cut(s) 1510
TaqI TCGA 5 cut(s) 598, 826, 1099, 1300, 1690
TaqII GACCGA 1 cut(s) 394
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 2 cut(s) 494, 1276
Tru1I TTAA 5 cut(s) 23, 252, 371, 630, 1638
Tru9I TTAA 5 cut(s) 23, 252, 371, 630, 1638
TscAI CASTG 4 cut(s) 291, 462, 1144, 1681
TseFI GTSAC 3 cut(s) 200, 1228, 1436
TseI GCWGC 5 cut(s) 181, 407, 500, 1366, 1529
Tsp45I GTSAC 3 cut(s) 200, 1228, 1436
TspDTI ATGAA 5 cut(s) 375, 588, 816, 1456, 1593
TspRI CASTG 4 cut(s) 291, 462, 1144, 1681
Vha464I CTTAAG 1 cut(s) 629
VpaK11BI GGWCC 1 cut(s) 334
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 4 cut(s) 736, 1580, 1634, 1686
XceI RCATGY 2 cut(s) 70, 284
XhoI CTCGAG 1 cut(s) 1299
XmiI GTMKAC 2 cut(s) 468, 1055
XmnI GAANNNNTTC 2 cut(s) 50, 1035
XspI CTAG 4 cut(s) 140, 794, 966, 1332
ZraI GACGTC 1 cut(s) 1508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.