AT2G05160

zinc finger (CCCH-type) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000498
Physical Location & Seq
Reverse (-)
1858543 .. 1862064
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G05160.2

Sequence Viewer

Length: 1611 bp
ATGAATTTCACAGAATCAATGAACGTTGTGCACGCCAGAATCCAACAACTTGAACCAGAGAATGCAGCAAAGATCTTTGGTTATCTCTTGTTGATGCAAGAAAATGGCAACCGCGACATGATCCGTCTCGCGTTCTGTCCTGATTCTGTTATGTGTTCTGTCATCAATTGCGTTAAATACGAGTTAGCTAGGAATTCTCATCATTACCACAGCCCTCCTTCTGATCACATTCCTACTCCCAAATTTGGATCATTCACCGGTTCATCGCCTCTTTCGGTTTCGGTTTCTCCTCCCATGAAAACCGGTTTTTGGGAGAATTCAACCGAGATGGATACCTTGCAGAACAATCTTCAGTTCTTGAATTTTGAGGATCCTTTGACCAGCCCTGAATTCTCTAACGGGTTCTTCTCTCAAGAACGTCAATGTTTGCCTTTGCGAACTAGCCGAAGATCCCCGAGTTTACCCGAGTTCCCGGTAAAAATCTGCCATTACTTCAACAAAGGGTTCTGCAAACACGGCAACAACTGTAGGTACTTCCACGGGCAGATTATACCGGAGAGGGAGAGTTTTGCTCAGATGTTTAATCCAAACAACAACCTAAGTGACGAAGAGCATGTTGTTTCCCCTGTATCTCTTGAGAAGCTAGAAGGTGAGATCATTGAGTTACTCAAGTTAAGAAGAGGAGCTCCAATCTCCATAGCTTCATTGCCAATGATGTACTACGAAAAATACGGTAGGACTCTTCAAGCTGAAGGATATCTCACTGAGTCACAAAGACATGGCAAAGCTGGCTATAGTCTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACAGGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGTGGAATACACTGGAGAGAGAAATGAACATGGAGCAATCCTTGCTGGTTCTAGACAGATTTACTTAACGTTTCCGGCAGAGAGTAGTTTCACTGAACATGATGTCTCAATCTACTTCACCTCATATGGACATGTGGAAGATGTGAGGATTCCTTGCCAGCAGAAAAGAATGTATGGATTTGTAACATTTGCTTCCTCAGAAACAGTTAAACACATTCTTGCTAAAGGCAATCCTCATTTCATTTGCAATGCACGTGTTCTAGTCAAGCCTTACCGGGAAAAATCACGCTCTAGTCGATACCTCGACAATTACAAGCCTCTACACGGCATGCGATATGGCTCTAAATTTATTGAGAGAGACATAGAGATGAACACATTGCCACCGCGGGTTAGTGAGAGCTCAAGAATGAGGAAGCCATTTCTTAGTGAGCCTGAACAATCAGTTTCTAAGTCCTTACCTACTAATTACTCCTACCTCGGCTTCTCCTCGGATGACTTCAAGTTAACATCAAATGCGGAGCAAGAGGAACAAGCAGAACGGTTGAGCTACCTACTGGACTATTTGAACACGGAAGATAATGTCATGAACATAACCACTAACTACAGAGACAATGATCGGAGAACTCATTGTGAATCGTTGGACAGTCAAGTCCTGAATCTACCCGAGAGTCCGTTTTCTTCCCTTTCGGGGAAGGAGATTTCAACGGTTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST-HTH RRM_1 zf-CCCH

Protein Analysis

536

Amino Acids

61.35

Weight (kDa)

6.56

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PABC_AtC3H46 PF23182 1 - 65 4.9e-25 AtC3H46 PABC domain
RRM_1 PF00076 328 - 381 5.4e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05160 AT2G05160 AT2G05160
fragaria_vesca FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900
malus_domestica MD03G1188600.v1.1 MD09G1123600.v1.1 MD17G1114400.v1.1
prunus_persica Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1
pyrus_communis pycom03g14150 pycom09g04760 pycom17g10570
rosa_chinensis RchiOBHm_Chr2g0156481 RchiOBHm_Chr5g0042651
rosa_laevigata RLG00000020916 RLG00000034148
rosa_multiflora Rmu_sc0004355.1_g000004 Rmu_sc0005392.1_g000010
rosa_roxburghii Rroxscaffold_1G00037990 Rroxscaffold_2G00093000
rosa_rugosa Rorug02G0453300 Rorug02G0453400 Rorug02G0453500 Rorug02G0453600 Rorug05G0203500 Rorug05G0203500 Rorug05G0203600.1 Rorug05G0203700
rosa_samantha Rh2AG519700 Rh2BG532000 Rh2CG504700 Rh2DG541000 Rh5AG288800 Rh5BG292900 Rh5CG325300 Rh5DG302800
rosa_wichuraiana Rw2G042840 Rw5G026790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1544
AccI GTMKAC 1 cut(s) 843
AccII CGCG 3 cut(s) 114, 131, 1282
AciI CCGC 4 cut(s) 112, 1280, 1282, 1412
AclI AACGTT 2 cut(s) 24, 965
AclWI GGATC 5 cut(s) 115, 256, 365, 378, 444
AcsI RAATTY 7 cut(s) 4, 193, 242, 316, 361, 389, 1241
AcuI CTGAAG 2 cut(s) 335, 771
AcvI CACGTG 1 cut(s) 1151
AfaI GTAC 2 cut(s) 533, 719
AfiI CCNNNNNNNGG 4 cut(s) 245, 309, 1220, 1584
AflIII ACRYGT 2 cut(s) 1027, 1150
AgeI ACCGGT 2 cut(s) 257, 302
AgsI TTSAA 9 cut(s) 53, 321, 361, 496, 746, 823, 1396, 1462, 1599
AluBI AGCT 9 cut(s) 188, 643, 686, 701, 749, 788, 808, 1296, 1443
AluI AGCT 9 cut(s) 188, 643, 686, 701, 749, 788, 808, 1296, 1443
Alw21I GWGCWC 3 cut(s) 33, 688, 1298
Alw26I GTCTC 5 cut(s) 131, 803, 1006, 1248, 1497
Alw44I GTGCAC 1 cut(s) 29
AlwI GGATC 5 cut(s) 115, 256, 365, 378, 444
Ama87I CYCGRG 3 cut(s) 454, 464, 1559
AoxI GGCC 1 cut(s) 848
ApaLI GTGCAC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 7 cut(s) 4, 193, 242, 316, 361, 389, 1241
AsiGI ACCGGT 2 cut(s) 257, 302
AsuC2I CCSGG 2 cut(s) 473, 1172
AsuHPI GGTGA 4 cut(s) 247, 662, 793, 1006
AvaI CYCGRG 3 cut(s) 454, 464, 1559
BaeGI GKGCMC 1 cut(s) 33
BamHI GGATCC 1 cut(s) 370
BanII GRGCYC 2 cut(s) 688, 1298
BbrPI CACGTG 1 cut(s) 1151
Bbv12I GWGCWC 3 cut(s) 33, 688, 1298
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 322
BceAI ACGGC 2 cut(s) 532, 1237
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 1 cut(s) 223
BcnI CCSGG 2 cut(s) 473, 1172
BcoDI GTCTC 5 cut(s) 131, 803, 1006, 1248, 1497
BfaI CTAG 6 cut(s) 189, 441, 644, 948, 1157, 1188
BfmI CTRYAG 3 cut(s) 526, 793, 1498
BfuI GTATCC 1 cut(s) 325
BglI GCCNNNNNGGC 1 cut(s) 856
BglII AGATCT 1 cut(s) 72
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 473, 1172
BmeT110I CYCGRG 3 cut(s) 454, 464, 1559
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 2 cut(s) 473, 1172
BmsI GCATC 3 cut(s) 84, 874, 896
BplI GAGNNNNNCTC 2 cut(s) 556, 588
BpmI CTGGAG 1 cut(s) 930
BpuEI CTTGAG 4 cut(s) 396, 653, 656, 1282
BpuMI CCSGG 2 cut(s) 473, 1172
BsaAI YACGTR 1 cut(s) 1151
BsaJI CCNNGG 4 cut(s) 538, 1280, 1372, 1383
BsaWI WCCGGW 3 cut(s) 257, 302, 553
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 309, 1220, 1584
Bse118I RCCGGY 2 cut(s) 257, 302
Bse1I ACTGG 2 cut(s) 913, 1455
Bse3DI GCAATG 3 cut(s) 704, 1150, 1271
BseDI CCNNGG 4 cut(s) 538, 1280, 1372, 1383
BseGI GGATG 2 cut(s) 889, 1393
BseLI CCNNNNNNNGG 4 cut(s) 245, 309, 1220, 1584
BseMI GCAATG 3 cut(s) 704, 1150, 1271
BseMII CTCAG 3 cut(s) 587, 756, 1107
BseNI ACTGG 2 cut(s) 913, 1455
BseRI GAGGAG 3 cut(s) 279, 696, 1372
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 1 cut(s) 77
Bsh1236I CGCG 3 cut(s) 114, 131, 1282
BshFI GGCC 1 cut(s) 850
BshTI ACCGGT 2 cut(s) 257, 302
BsiHKAI GWGCWC 3 cut(s) 33, 688, 1298
BsiHKCI CYCGRG 3 cut(s) 454, 464, 1559
BsiSI CCGG 6 cut(s) 258, 303, 473, 554, 971, 1171
BslI CCNNNNNNNGG 4 cut(s) 245, 309, 1220, 1584
BsmAI GTCTC 5 cut(s) 131, 803, 1006, 1248, 1497
BsmBI CGTCTC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 1 cut(s) 850
BsoBI CYCGRG 3 cut(s) 454, 464, 1559
Bsp1286I GDGCHC 3 cut(s) 33, 688, 1298
Bsp143I GATC 8 cut(s) 72, 120, 223, 248, 370, 449, 654, 1510
BspACI CCGC 4 cut(s) 112, 1280, 1282, 1412
BspANI GGCC 1 cut(s) 850
BspCNI CTCAG 3 cut(s) 586, 757, 1106
BspFNI CGCG 3 cut(s) 114, 131, 1282
BspHI TCATGA 1 cut(s) 1479
BspLI GGNNCC 1 cut(s) 372
BspPI GGATC 5 cut(s) 115, 256, 365, 378, 444
BspQI GCTCTTC 1 cut(s) 603
BsrDI GCAATG 3 cut(s) 704, 1150, 1271
BsrFI RCCGGY 2 cut(s) 257, 302
BsrI ACTGG 2 cut(s) 913, 1455
BssAI RCCGGY 2 cut(s) 257, 302
BssECI CCNNGG 4 cut(s) 538, 1280, 1372, 1383
BssMI GATC 8 cut(s) 72, 120, 223, 248, 370, 449, 654, 1510
Bst4CI ACNGT 6 cut(s) 527, 734, 1102, 1437, 1541, 1603
Bst6I CTCTTC 3 cut(s) 603, 673, 747
BstAPI GCANNNNNTGC 2 cut(s) 884, 938
BstBAI YACGTR 1 cut(s) 1151
BstC8I GCNNGC 5 cut(s) 33, 790, 817, 1055, 1226
BstDEI CTNAG 6 cut(s) 573, 599, 765, 1093, 1319, 1344
BstDSI CCRYGG 2 cut(s) 538, 1280
BstF5I GGATG 2 cut(s) 889, 1393
BstFNI CGCG 3 cut(s) 114, 131, 1282
BstKTI GATC 8 cut(s) 75, 123, 226, 251, 373, 452, 657, 1513
BstMAI GTCTC 5 cut(s) 131, 803, 1006, 1248, 1497
BstMBI GATC 8 cut(s) 72, 120, 223, 248, 370, 449, 654, 1510
BstMWI GCNNNNNNNGC 5 cut(s) 516, 789, 856, 884, 938
BstNSI RCATGY 3 cut(s) 617, 1031, 1228
BstSCI CCNGG 2 cut(s) 471, 1170
BstSFI CTRYAG 3 cut(s) 526, 793, 1498
BstSLI GKGCMC 1 cut(s) 33
BstUI CGCG 3 cut(s) 114, 131, 1282
BstV1I GCAGC 1 cut(s) 77
BstX2I RGATCY 3 cut(s) 72, 370, 449
BstYI RGATCY 3 cut(s) 72, 370, 449
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 850
BtgI CCRYGG 2 cut(s) 538, 1280
BtgZI GCGATG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 889, 1393
BtsIMutI CAGTG 3 cut(s) 762, 906, 987
Cac8I GCNNGC 5 cut(s) 33, 790, 817, 1055, 1226
CciI TCATGA 1 cut(s) 1479
Cfr10I RCCGGY 2 cut(s) 257, 302
Cfr42I CCGCGG 1 cut(s) 1283
Csp6I GTAC 2 cut(s) 532, 718
CspAI ACCGGT 2 cut(s) 257, 302
CspCI CAANNNNNGTGG 2 cut(s) 879, 914
CviQI GTAC 2 cut(s) 532, 718
DdeI CTNAG 6 cut(s) 573, 599, 765, 1093, 1319, 1344
DpnI GATC 8 cut(s) 74, 122, 225, 250, 372, 451, 656, 1512
DpnII GATC 8 cut(s) 72, 120, 223, 248, 370, 449, 654, 1510
DrdI GACNNNNNNGTC 1 cut(s) 1544
DseDI GACNNNNNNGTC 1 cut(s) 1544
Eam1104I CTCTTC 3 cut(s) 603, 673, 747
EarI CTCTTC 3 cut(s) 603, 673, 747
Ecl136II GAGCTC 2 cut(s) 686, 1296
Eco147I AGGCCT 1 cut(s) 850
Eco24I GRGCYC 2 cut(s) 688, 1298
Eco32I GATATC 1 cut(s) 758
Eco53kI GAGCTC 2 cut(s) 686, 1296
Eco57I CTGAAG 2 cut(s) 335, 771
Eco72I CACGTG 1 cut(s) 1151
Eco88I CYCGRG 3 cut(s) 454, 464, 1559
EcoICRI GAGCTC 2 cut(s) 686, 1296
EcoRI GAATTC 3 cut(s) 193, 316, 389
EcoRV GATATC 1 cut(s) 758
EcoT22I ATGCAT 1 cut(s) 889
EcoT38I GRGCYC 2 cut(s) 688, 1298
Esp3I CGTCTC 1 cut(s) 131
FauI CCCGC 1 cut(s) 1275
FauNDI CATATG 1 cut(s) 1021
FbaI TGATCA 1 cut(s) 223
FblI GTMKAC 1 cut(s) 843
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 2 cut(s) 896, 1400
FriOI GRGCYC 2 cut(s) 688, 1298
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 6 cut(s) 189, 441, 644, 948, 1157, 1188
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 930
HaeIII GGCC 1 cut(s) 850
HapII CCGG 6 cut(s) 258, 303, 473, 554, 971, 1171
HincII GTYRAC 2 cut(s) 844, 1401
HindII GTYRAC 2 cut(s) 844, 1401
HindIII AAGCTT 1 cut(s) 806
HpaI GTTAAC 1 cut(s) 1401
HpaII CCGG 6 cut(s) 258, 303, 473, 554, 971, 1171
HphI GGTGA 4 cut(s) 247, 662, 793, 1006
Hpy166II GTNNAC 4 cut(s) 31, 461, 844, 1401
Hpy188I TCNGA 5 cut(s) 223, 576, 1096, 1387, 1515
Hpy188III TCNNGA 8 cut(s) 140, 358, 413, 635, 948, 1299, 1480, 1549
Hpy8I GTNNAC 4 cut(s) 31, 461, 844, 1401
Hpy99I CGWCG 1 cut(s) 845
HpyAV CCTTC 4 cut(s) 228, 641, 746, 1582
HpyCH4III ACNGT 6 cut(s) 527, 734, 1102, 1437, 1541, 1603
HpyCH4IV ACGT 4 cut(s) 24, 418, 965, 1150
HpyCH4V TGCA 8 cut(s) 31, 65, 97, 340, 510, 887, 1143, 1148
HpyF10VI GCNNNNNNNGC 5 cut(s) 516, 789, 856, 884, 938
HpyF3I CTNAG 6 cut(s) 573, 599, 765, 1093, 1319, 1344
HpySE526I ACGT 4 cut(s) 24, 418, 965, 1150
Ksp22I TGATCA 1 cut(s) 223
KspAI GTTAAC 1 cut(s) 1401
KspI CCGCGG 1 cut(s) 1283
Kzo9I GATC 8 cut(s) 72, 120, 223, 248, 370, 449, 654, 1510
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 4 cut(s) 683, 691, 929, 1414
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 3 cut(s) 84, 874, 896
MaeI CTAG 6 cut(s) 189, 441, 644, 948, 1157, 1188
MaeII ACGT 4 cut(s) 24, 418, 965, 1150
MaeIII GTNAC 5 cut(s) 602, 663, 768, 1078, 1603
MalI GATC 8 cut(s) 74, 122, 225, 250, 372, 451, 656, 1512
MboI GATC 8 cut(s) 72, 120, 223, 248, 370, 449, 654, 1510
MfeI CAATTG 1 cut(s) 166
MflI RGATCY 3 cut(s) 72, 370, 449
MhlI GDGCHC 3 cut(s) 33, 688, 1298
MlyI GAGTC 3 cut(s) 733, 776, 1573
MmeI TCCRAC 2 cut(s) 67, 1515
Mph1103I ATGCAT 1 cut(s) 889
MseI TTAA 6 cut(s) 174, 582, 674, 962, 1104, 1400
MslI CAYNNNNRTG 1 cut(s) 1262
MspA1I CMGCKG 1 cut(s) 1282
MspI CCGG 6 cut(s) 258, 303, 473, 554, 971, 1171
MspR9I CCNGG 2 cut(s) 473, 1172
MunI CAATTG 1 cut(s) 166
Mva1269I GAATGC 1 cut(s) 67
MvnI CGCG 3 cut(s) 114, 131, 1282
MwoI GCNNNNNNNGC 5 cut(s) 516, 789, 856, 884, 938
NciI CCSGG 2 cut(s) 473, 1172
NdeI CATATG 1 cut(s) 1021
NdeII GATC 8 cut(s) 72, 120, 223, 248, 370, 449, 654, 1510
NlaIV GGNNCC 1 cut(s) 372
NmeAIII GCCGAG 1 cut(s) 1353
NmuCI GTSAC 2 cut(s) 602, 768
NsiI ATGCAT 1 cut(s) 889
NspI RCATGY 3 cut(s) 617, 1031, 1228
PaeI GCATGC 1 cut(s) 1228
PagI TCATGA 1 cut(s) 1479
PceI AGGCCT 1 cut(s) 850
PciI ACATGT 1 cut(s) 1027
PciSI GCTCTTC 1 cut(s) 603
PcsI WCGNNNNNNNCGW 1 cut(s) 1189
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 7 cut(s) 14, 39, 143, 832, 1045, 1529, 1552
PinAI ACCGGT 2 cut(s) 257, 302
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 3 cut(s) 733, 775, 1572
PmaCI CACGTG 1 cut(s) 1151
PmlI CACGTG 1 cut(s) 1151
PpsI GAGTC 3 cut(s) 733, 775, 1572
Ppu21I YACGTR 1 cut(s) 1151
PscI ACATGT 1 cut(s) 1027
Psp124BI GAGCTC 2 cut(s) 688, 1298
Psp1406I AACGTT 2 cut(s) 24, 965
PspCI CACGTG 1 cut(s) 1151
PspN4I GGNNCC 1 cut(s) 372
PsuI RGATCY 3 cut(s) 72, 370, 449
RsaI GTAC 2 cut(s) 533, 719
RsaNI GTAC 2 cut(s) 532, 718
RseI CAYNNNNRTG 1 cut(s) 1262
SacI GAGCTC 2 cut(s) 688, 1298
SacII CCGCGG 1 cut(s) 1283
SalI GTCGAC 1 cut(s) 842
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 6 cut(s) 174, 582, 674, 962, 1104, 1400
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 8 cut(s) 72, 120, 223, 248, 370, 449, 654, 1510
SchI GAGTC 3 cut(s) 733, 776, 1573
ScrFI CCNGG 2 cut(s) 473, 1172
SduI GDGCHC 3 cut(s) 33, 688, 1298
SfaNI GCATC 3 cut(s) 84, 874, 896
SfcI CTRYAG 3 cut(s) 526, 793, 1498
Sfr303I CCGCGG 1 cut(s) 1283
SgrBI CCGCGG 1 cut(s) 1283
SmiMI CAYNNNNRTG 1 cut(s) 1262
SmlI CTYRAG 4 cut(s) 411, 635, 668, 1297
SmoI CTYRAG 4 cut(s) 411, 635, 668, 1297
SphI GCATGC 1 cut(s) 1228
SseBI AGGCCT 1 cut(s) 850
SsiI CCGC 4 cut(s) 112, 1280, 1282, 1412
SspMI CTAG 6 cut(s) 189, 441, 644, 948, 1157, 1188
SstI GAGCTC 2 cut(s) 688, 1298
StuI AGGCCT 1 cut(s) 850
StyD4I CCNGG 2 cut(s) 471, 1170
TaaI ACNGT 6 cut(s) 527, 734, 1102, 1437, 1541, 1603
TaiI ACGT 4 cut(s) 27, 421, 968, 1153
TaqI TCGA 3 cut(s) 843, 1192, 1200
TatI WGTACW 1 cut(s) 717
TfiI GAWTC 7 cut(s) 14, 39, 143, 832, 1045, 1529, 1552
Tru1I TTAA 6 cut(s) 174, 582, 674, 962, 1104, 1400
Tru9I TTAA 6 cut(s) 174, 582, 674, 962, 1104, 1400
TscAI CASTG 3 cut(s) 769, 913, 994
TseFI GTSAC 2 cut(s) 602, 768
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 2 cut(s) 602, 768
TspDTI ATGAA 9 cut(s) 17, 35, 252, 311, 693, 936, 1126, 1280, 1496
TspGWI ACGGA 3 cut(s) 113, 1481, 1557
TspRI CASTG 3 cut(s) 769, 913, 994
VneI GTGCAC 1 cut(s) 29
XapI RAATTY 7 cut(s) 4, 193, 242, 316, 361, 389, 1241
XbaI TCTAGA 1 cut(s) 947
XceI RCATGY 3 cut(s) 617, 1031, 1228
XmiI GTMKAC 1 cut(s) 843
XspI CTAG 6 cut(s) 189, 441, 644, 948, 1157, 1188
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.