Rw2G042840

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000498
Physical Location & Seq
Reverse (-)
69174460 .. 69178825
4366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G042840.1

Sequence Viewer

Length: 1698 bp
ATGGATTTTTCAGAGTCCACAAAAGTAGTGTACAATAGGATCCAGAAGCTAGAGCCTGAAAATGTCTCTAAGATAATTGGCTATCTTCTGTTGCAAGACAATGGGGAGCGTGACATGATCCGGCTGGCTTTCAGCCCCGATAATTTGATCCAGTCTTTGATTAATAAGGCGAAAACCGAGCTATGCAAACATGCAGTGTCGTCTCCAATCTCACCTTCTCAGATGAACCAAGTGGCTGTCTCAGACCTGCCTTTGCAATTCACTCCCTACTCTCCGAGTTTAACAAGACCGATTTCATGTCCCACAACTCTTGGAGCGGCAAATCCATTCAGTAGGGAGGCCCAAGTGCCTGGTGATCAGCAACCACTGCAAGCTGTAGACTTTATTCCACCAGGGTACTCAGATTCCGCTGCTGAAGATTATTGCCTCCAGAGTCAACAAATGCAGTTTCTGCCAGACTTTTCAAGCAATTTCTGCTATCATGAACCTGCATTGGGTGTGAGGAGTCGAAGGTCTCCGAGCTTGCCTGAGTTTCCTCTTAAGGTTTGCCATTACTTCAGTAAGGGCTTTTGCAAGCATGGAAACAACTGCAGATACTTCCATGGCCACCCCATGCCAGAGAGCTTTTCACAGTTTTTCTGCCCAAATTCAAATGTGCTTCAAAGCGATGACCATGTTGTCTCTCCTGGATCCCTTGAGAAGCTAGAGTATGAAATAATTGAGCTTCTGAAATCTCGAAGAGGGTTTCCAATATCTATTGCCTCTTTGCCAATGATGTATTATGAGAAATATGGGAGGACTCTTCAGGCCGAAGGGTACCTTACTGAGAGCCAGAGACATGGTAAGGCTGGCTATAGCCTCACAAAGCTTCTTGCTAGATTGAAAAACAGCATTCGTCTCATTGATCGGCCTCATGGACAGCACTCGGTTATATTGGCTGAAGATATTCCAAAATACTTGGAGTATACTGGCGAGAAAACTGAACCTGGTGGAATTATTGCTGGTTCTCGACAGATTTATCTCACTTTTCCAGCTGAGAGTAATTTCACTGAGCAAGATGTTTCCAACTATTTCAACAAATATGGGCCAGTTCAAGATGTGCGCATCCCATGCCAGCAGAAGAGGATGTTTGGGTTTGTCACCTTTCTTTATGCAGACACGGTGAGACATATTTTGTCGAAAGGGAATCCTCATTTTGTATGCGGGGCTCGAGTTCTGGTGAAACCTTACAGGGAGAAGTCTAGGCTTGTTGACAGGAAGTTTTCAGACAAGATGCAGCATTCTCCATGCTACAATTCACATTACATTGATGCGGATGCAGAGCTTCACTCAATGCCAAGAGTTTGTGACAGTTCAAGATTGCTAAGAAAGCAATTCATAGAAGAGCATGAGCAGGCACTTGAGTGTGAGAGAAGACGTCGCTCGGAAATGCACTTAGCAGCCAAGCCCTTGTCCCATCATCATCATCTCTATTATGGCTACTCCATGGATGAATTCAATCATCCAGAAGCTCATGCAGAACAAGCTGAGTTCCCATCTGCGAAGGAATTTAACATTTTGCTGGATGCTTGGAATAATGGTTCCACCAGTGAGGACAAAATTCGACACATAAACACTAATTACATTGACCACCAGGATAGCCAAGGTATTATCCTCCCAGAGAGCCCATTCGCATCTGCAATATCAACAGTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST-HTH RRM_1 zf-CCCH

Protein Analysis

565

Amino Acids

64.42

Weight (kDa)

6.58

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PABC_AtC3H46 PF23182 1 - 61 4e-33 AtC3H46 PABC domain
RRM_1 PF00076 348 - 396 1.5e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05160 AT2G05160 AT2G05160
fragaria_vesca FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900
malus_domestica MD03G1188600.v1.1 MD09G1123600.v1.1 MD17G1114400.v1.1
prunus_persica Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1
pyrus_communis pycom03g14150 pycom09g04760 pycom17g10570
rosa_chinensis RchiOBHm_Chr2g0156481 RchiOBHm_Chr5g0042651
rosa_laevigata RLG00000020916 RLG00000034148
rosa_multiflora Rmu_sc0004355.1_g000004 Rmu_sc0005392.1_g000010
rosa_roxburghii Rroxscaffold_1G00037990 Rroxscaffold_2G00093000
rosa_rugosa Rorug02G0453300 Rorug02G0453400 Rorug02G0453500 Rorug02G0453600 Rorug05G0203500 Rorug05G0203500 Rorug05G0203600.1 Rorug05G0203700
rosa_samantha Rh2AG519700 Rh2BG532000 Rh2CG504700 Rh2DG541000 Rh5AG288800 Rh5BG292900 Rh5CG325300 Rh5DG302800
rosa_wichuraiana Rw2G042840 Rw5G026790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 677
AatII GACGTC 1 cut(s) 1420
Acc16I TGCGCA 1 cut(s) 1103
Acc36I ACCTGC 2 cut(s) 255, 496
Acc65I GGTACC 1 cut(s) 816
AccB1I GGYRCC 1 cut(s) 816
AccBSI CCGCTC 1 cut(s) 317
AccI GTMKAC 2 cut(s) 378, 965
AciI CCGC 4 cut(s) 317, 408, 1203, 1313
AclWI GGATC 6 cut(s) 34, 47, 112, 142, 684, 697
AcoI YGGCCR 1 cut(s) 604
AcsI RAATTY 4 cut(s) 646, 1493, 1547, 1599
AcuI CTGAAG 4 cut(s) 435, 541, 788, 960
AcyI GRCGYC 1 cut(s) 1417
AfaI GTAC 3 cut(s) 32, 398, 818
AfiI CCNNNNNNNGG 1 cut(s) 494
AflII CTTAAG 1 cut(s) 539
AgsI TTSAA 8 cut(s) 465, 651, 662, 883, 1075, 1094, 1356, 1498
AjnI CCWGG 5 cut(s) 349, 391, 685, 985, 1632
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AleI CACNNNNGTG 1 cut(s) 1402
AloI GAACNNNNNNTCC 2 cut(s) 1564, 1596
Alw26I GTCTC 8 cut(s) 70, 207, 244, 519, 685, 829, 902, 1159
AlwI GGATC 6 cut(s) 34, 47, 112, 142, 684, 697
AlwNI CAGNNNCTG 1 cut(s) 451
Ama87I CYCGRG 1 cut(s) 1209
AoxI GGCC 5 cut(s) 339, 604, 807, 908, 1085
ApeKI GCWGC 3 cut(s) 410, 1276, 1439
ApoI RAATTY 4 cut(s) 646, 1493, 1547, 1599
AseI ATTAAT 1 cut(s) 162
Asp700I GAANNNNTTC 1 cut(s) 945
Asp718I GGTACC 1 cut(s) 816
AspLEI GCGC 1 cut(s) 1104
AspS9I GGNCC 2 cut(s) 340, 1085
AsuHPI GGTGA 5 cut(s) 204, 365, 1132, 1174, 1231
AvaI CYCGRG 1 cut(s) 1209
BalI TGGCCA 1 cut(s) 606
BamHI GGATCC 2 cut(s) 39, 689
BanI GGYRCC 1 cut(s) 816
BanII GRGCYC 2 cut(s) 1210, 1667
BbsI GAAGAC 1 cut(s) 1420
BbvI GCAGC 3 cut(s) 397, 1288, 1451
BccI CCATC 2 cut(s) 1464, 1543
BciT130I CCWGG 5 cut(s) 351, 393, 687, 987, 1634
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 8 cut(s) 70, 207, 244, 519, 685, 829, 902, 1159
BfaI CTAG 4 cut(s) 50, 704, 876, 1242
BfmI CTRYAG 3 cut(s) 375, 589, 853
BfrI CTTAAG 1 cut(s) 539
BfuAI ACCTGC 2 cut(s) 255, 496
BisI GCNGC 4 cut(s) 318, 411, 1277, 1440
BlsI GCNGC 4 cut(s) 319, 412, 1278, 1441
Bme1390I CCNGG 5 cut(s) 351, 393, 687, 987, 1634
BmeT110I CYCGRG 1 cut(s) 1209
BmgT120I GGNCC 2 cut(s) 340, 1085
BmiI GGNNCC 4 cut(s) 41, 691, 818, 1582
BmrFI CCNGG 5 cut(s) 351, 393, 687, 987, 1634
BmsI GCATC 6 cut(s) 1113, 1263, 1300, 1306, 1555, 1682
BpiI GAAGAC 1 cut(s) 1420
BplI GAGNNNNNCTC 2 cut(s) 1313, 1345
BpmI CTGGAG 1 cut(s) 413
BpuEI CTTGAG 2 cut(s) 716, 1421
BsaHI GRCGYC 1 cut(s) 1417
BsaI GGTCTC 1 cut(s) 519
BsaJI CCNNGG 4 cut(s) 392, 601, 1485, 1642
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse1I ACTGG 4 cut(s) 151, 973, 1088, 1587
BseBI CCWGG 5 cut(s) 351, 393, 687, 987, 1634
BseDI CCNNGG 4 cut(s) 392, 601, 1485, 1642
BseGI GGATG 6 cut(s) 1104, 1131, 1321, 1495, 1501, 1570
BseLI CCNNNNNNNGG 1 cut(s) 494
BseMII CTCAG 8 cut(s) 233, 255, 414, 519, 816, 1026, 1041, 1518
BseNI ACTGG 4 cut(s) 151, 973, 1088, 1587
BseRI GAGGAG 1 cut(s) 517
BseXI GCAGC 3 cut(s) 397, 1288, 1451
BshFI GGCC 5 cut(s) 341, 606, 809, 910, 1087
BshNI GGYRCC 1 cut(s) 816
BsiHKCI CYCGRG 1 cut(s) 1209
BsiSI CCGG 1 cut(s) 121
BslFI GGGAC 2 cut(s) 285, 1438
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 8 cut(s) 70, 207, 244, 519, 685, 829, 902, 1159
BsmBI CGTCTC 2 cut(s) 207, 902
BsmFI GGGAC 2 cut(s) 285, 1438
BsmI GAATGC 2 cut(s) 891, 1279
BsnI GGCC 5 cut(s) 341, 606, 809, 910, 1087
Bso31I GGTCTC 1 cut(s) 519
BsoBI CYCGRG 1 cut(s) 1209
Bsp1286I GDGCHC 2 cut(s) 1210, 1667
Bsp1407I TGTACA 1 cut(s) 30
Bsp143I GATC 6 cut(s) 39, 117, 147, 355, 689, 904
Bsp19I CCATGG 2 cut(s) 601, 1485
BspACI CCGC 4 cut(s) 317, 408, 1203, 1313
BspANI GGCC 5 cut(s) 341, 606, 809, 910, 1087
BspCNI CTCAG 8 cut(s) 232, 254, 413, 520, 817, 1027, 1042, 1519
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 4 cut(s) 41, 691, 818, 1582
BspMAI CTGCAG 1 cut(s) 593
BspMI ACCTGC 2 cut(s) 255, 496
BspPI GGATC 6 cut(s) 34, 47, 112, 142, 684, 697
BspQI GCTCTTC 1 cut(s) 1377
BspT107I GGYRCC 1 cut(s) 816
BspTI CTTAAG 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 519
BsrBI CCGCTC 1 cut(s) 317
BsrGI TGTACA 1 cut(s) 30
BsrI ACTGG 4 cut(s) 151, 973, 1088, 1587
BssECI CCNNGG 4 cut(s) 392, 601, 1485, 1642
BssMI GATC 6 cut(s) 39, 117, 147, 355, 689, 904
BssNAI GTATAC 1 cut(s) 966
BssNI GRCGYC 1 cut(s) 1417
BssT1I CCWWGG 3 cut(s) 601, 1485, 1642
Bst1107I GTATAC 1 cut(s) 966
Bst2UI CCWGG 5 cut(s) 351, 393, 687, 987, 1634
Bst4CI ACNGT 4 cut(s) 633, 1162, 1352, 1690
Bst6I CTCTTC 4 cut(s) 733, 807, 1115, 1377
BstACI GRCGYC 1 cut(s) 1417
BstAFI CTTAAG 1 cut(s) 539
BstAPI GCANNNNNTGC 4 cut(s) 367, 451, 474, 1110
BstAUI TGTACA 1 cut(s) 30
BstC8I GCNNGC 7 cut(s) 126, 372, 524, 575, 850, 1115, 1395
BstDSI CCRYGG 2 cut(s) 601, 1485
BstF5I GGATG 6 cut(s) 1104, 1131, 1321, 1495, 1501, 1570
BstHHI GCGC 1 cut(s) 1104
BstKTI GATC 6 cut(s) 42, 120, 150, 358, 692, 907
BstMAI GTCTC 8 cut(s) 70, 207, 244, 519, 685, 829, 902, 1159
BstMBI GATC 6 cut(s) 39, 117, 147, 355, 689, 904
BstMWI GCNNNNNNNGC 6 cut(s) 367, 451, 474, 1110, 1369, 1523
BstNI CCWGG 5 cut(s) 351, 393, 687, 987, 1634
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 5 cut(s) 349, 391, 685, 985, 1632
BstSFI CTRYAG 3 cut(s) 375, 589, 853
BstV1I GCAGC 3 cut(s) 397, 1288, 1451
BstV2I GAAGAC 1 cut(s) 1420
BstX2I RGATCY 2 cut(s) 39, 689
BstXI CCANNNNNNTGG 2 cut(s) 350, 839
BstYI RGATCY 2 cut(s) 39, 689
BstZ17I GTATAC 1 cut(s) 966
BsuRI GGCC 5 cut(s) 341, 606, 809, 910, 1087
BtgI CCRYGG 2 cut(s) 601, 1485
BtgZI GCGATG 1 cut(s) 681
BtsCI GGATG 6 cut(s) 1104, 1131, 1321, 1495, 1501, 1570
BtsI GCAGTG 2 cut(s) 201, 365
BtsIMutI CAGTG 4 cut(s) 201, 365, 1047, 1594
BveI ACCTGC 2 cut(s) 255, 496
Cac8I GCNNGC 7 cut(s) 126, 372, 524, 575, 850, 1115, 1395
CaiI CAGNNNCTG 1 cut(s) 451
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 1104
Cfr13I GGNCC 2 cut(s) 340, 1085
CsiI ACCWGGT 1 cut(s) 985
Csp6I GTAC 3 cut(s) 31, 397, 817
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviQI GTAC 3 cut(s) 31, 397, 817
DpnI GATC 6 cut(s) 41, 119, 149, 357, 691, 906
DpnII GATC 6 cut(s) 39, 117, 147, 355, 689, 904
DrdI GACNNNNNNGTC 1 cut(s) 677
DseDI GACNNNNNNGTC 1 cut(s) 677
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 4 cut(s) 733, 807, 1115, 1377
EarI CTCTTC 4 cut(s) 733, 807, 1115, 1377
Eco130I CCWWGG 3 cut(s) 601, 1485, 1642
Eco24I GRGCYC 2 cut(s) 1210, 1667
Eco31I GGTCTC 1 cut(s) 519
Eco57I CTGAAG 4 cut(s) 435, 541, 788, 960
Eco88I CYCGRG 1 cut(s) 1209
EcoRI GAATTC 1 cut(s) 1493
EcoRII CCWGG 5 cut(s) 349, 391, 685, 985, 1632
EcoT14I CCWWGG 3 cut(s) 601, 1485, 1642
EcoT38I GRGCYC 2 cut(s) 1210, 1667
ErhI CCWWGG 3 cut(s) 601, 1485, 1642
Esp3I CGTCTC 2 cut(s) 207, 902
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FaqI GGGAC 2 cut(s) 285, 1438
FauI CCCGC 1 cut(s) 1196
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 2 cut(s) 378, 965
Fnu4HI GCNGC 4 cut(s) 318, 411, 1277, 1440
FokI GGATG 6 cut(s) 1091, 1138, 1328, 1488, 1502, 1577
FriOI GRGCYC 2 cut(s) 1210, 1667
Fsp4HI GCNGC 4 cut(s) 318, 411, 1277, 1440
FspAI RTGCGCAY 1 cut(s) 1103
FspBI CTAG 4 cut(s) 50, 704, 876, 1242
FspI TGCGCA 1 cut(s) 1103
GlaI GCGC 1 cut(s) 1103
GluI GCNGC 4 cut(s) 318, 411, 1277, 1440
GsuI CTGGAG 1 cut(s) 413
HaeIII GGCC 5 cut(s) 341, 606, 809, 910, 1087
HapII CCGG 1 cut(s) 121
HhaI GCGC 1 cut(s) 1104
Hin1I GRCGYC 1 cut(s) 1417
Hin6I GCGC 1 cut(s) 1102
HinP1I GCGC 1 cut(s) 1102
HincII GTYRAC 2 cut(s) 437, 1252
HindII GTYRAC 2 cut(s) 437, 1252
HindIII AAGCTT 1 cut(s) 866
HinfI GANTC 6 cut(s) 14, 404, 433, 505, 799, 1186
HpaII CCGG 1 cut(s) 121
HphI GGTGA 5 cut(s) 204, 365, 1132, 1174, 1231
Hpy166II GTNNAC 6 cut(s) 18, 31, 379, 437, 966, 1252
Hpy188I TCNGA 9 cut(s) 13, 222, 244, 276, 403, 519, 729, 1267, 1426
Hpy188III TCNNGA 8 cut(s) 43, 430, 482, 735, 1008, 1094, 1356, 1505
Hpy8I GTNNAC 6 cut(s) 18, 31, 379, 437, 966, 1252
Hpy99I CGWCG 1 cut(s) 1422
HpyAV CCTTC 4 cut(s) 225, 504, 806, 1537
HpyCH4III ACNGT 4 cut(s) 633, 1162, 1352, 1690
HpyCH4IV ACGT 1 cut(s) 1417
HpyF10VI GCNNNNNNNGC 6 cut(s) 367, 451, 474, 1110, 1369, 1523
HpySE526I ACGT 1 cut(s) 1417
Hsp92I GRCGYC 1 cut(s) 1417
HspAI GCGC 1 cut(s) 1102
KpnI GGTACC 1 cut(s) 820
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 6 cut(s) 39, 117, 147, 355, 689, 904
LguI GCTCTTC 1 cut(s) 1377
LmnI GCTCC 2 cut(s) 106, 314
Lsp1109I GCAGC 3 cut(s) 397, 1288, 1451
LweI GCATC 6 cut(s) 1113, 1263, 1300, 1306, 1555, 1682
MabI ACCWGGT 1 cut(s) 985
MaeI CTAG 4 cut(s) 50, 704, 876, 1242
MaeII ACGT 1 cut(s) 1417
MaeIII GTNAC 3 cut(s) 110, 1138, 1346
MalI GATC 6 cut(s) 41, 119, 149, 357, 691, 906
MbiI CCGCTC 1 cut(s) 317
MboI GATC 6 cut(s) 39, 117, 147, 355, 689, 904
MboII GAAGA 8 cut(s) 77, 428, 750, 794, 953, 1132, 1394, 1425
MflI RGATCY 2 cut(s) 39, 689
MhlI GDGCHC 2 cut(s) 1210, 1667
MlsI TGGCCA 1 cut(s) 606
MluNI TGGCCA 1 cut(s) 606
MlyI GAGTC 4 cut(s) 23, 442, 514, 793
MmeI TCCRAC 1 cut(s) 1089
Mox20I TGGCCA 1 cut(s) 606
MroXI GAANNNNTTC 1 cut(s) 945
MscI TGGCCA 1 cut(s) 606
MseI TTAA 4 cut(s) 162, 281, 540, 1551
MslI CAYNNNNRTG 1 cut(s) 1402
Msp20I TGGCCA 1 cut(s) 606
MspA1I CMGCKG 2 cut(s) 410, 1034
MspCI CTTAAG 1 cut(s) 539
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 5 cut(s) 351, 393, 687, 987, 1634
Mva1269I GAATGC 2 cut(s) 891, 1279
MvaI CCWGG 5 cut(s) 351, 393, 687, 987, 1634
MwoI GCNNNNNNNGC 6 cut(s) 367, 451, 474, 1110, 1369, 1523
NcoI CCATGG 2 cut(s) 601, 1485
NdeII GATC 6 cut(s) 39, 117, 147, 355, 689, 904
NlaIV GGNNCC 4 cut(s) 41, 691, 818, 1582
NmuCI GTSAC 3 cut(s) 110, 1138, 1346
NsbI TGCGCA 1 cut(s) 1103
NspI RCATGY 1 cut(s) 194
OliI CACNNNNGTG 1 cut(s) 1402
PaeR7I CTCGAG 1 cut(s) 1209
PagI TCATGA 1 cut(s) 481
PciSI GCTCTTC 1 cut(s) 1377
PctI GAATGC 2 cut(s) 891, 1279
PdmI GAANNNNTTC 1 cut(s) 945
PfeI GAWTC 2 cut(s) 404, 1186
PfoI TCCNGGA 1 cut(s) 685
PkrI GCNGC 4 cut(s) 319, 412, 1278, 1441
PleI GAGTC 4 cut(s) 22, 441, 513, 793
PpsI GAGTC 4 cut(s) 22, 441, 513, 793
PshBI ATTAAT 1 cut(s) 162
Psp6I CCWGG 5 cut(s) 349, 391, 685, 985, 1632
PspGI CCWGG 5 cut(s) 349, 391, 685, 985, 1632
PspN4I GGNNCC 4 cut(s) 41, 691, 818, 1582
PspPI GGNCC 2 cut(s) 340, 1085
PspXI VCTCGAGB 1 cut(s) 1209
PstI CTGCAG 1 cut(s) 593
PstNI CAGNNNCTG 1 cut(s) 451
PsuI RGATCY 2 cut(s) 39, 689
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 3 cut(s) 32, 398, 818
RsaNI GTAC 3 cut(s) 31, 397, 817
RseI CAYNNNNRTG 1 cut(s) 1402
SapI GCTCTTC 1 cut(s) 1377
SaqAI TTAA 4 cut(s) 162, 281, 540, 1551
SatI GCNGC 4 cut(s) 318, 411, 1277, 1440
Sau3AI GATC 6 cut(s) 39, 117, 147, 355, 689, 904
Sau96I GGNCC 2 cut(s) 340, 1085
SchI GAGTC 4 cut(s) 23, 442, 514, 793
ScrFI CCNGG 5 cut(s) 351, 393, 687, 987, 1634
SduI GDGCHC 2 cut(s) 1210, 1667
SexAI ACCWGGT 1 cut(s) 985
SfaNI GCATC 6 cut(s) 1113, 1263, 1300, 1306, 1555, 1682
SfcI CTRYAG 3 cut(s) 375, 589, 853
Sfr274I CTCGAG 1 cut(s) 1209
SlaI CTCGAG 1 cut(s) 1209
SmiMI CAYNNNNRTG 1 cut(s) 1402
SmlI CTYRAG 4 cut(s) 539, 695, 1209, 1400
SmoI CTYRAG 4 cut(s) 539, 695, 1209, 1400
SsiI CCGC 4 cut(s) 317, 408, 1203, 1313
SspMI CTAG 4 cut(s) 50, 704, 876, 1242
StyD4I CCNGG 5 cut(s) 349, 391, 685, 985, 1632
StyI CCWWGG 3 cut(s) 601, 1485, 1642
TaaI ACNGT 4 cut(s) 633, 1162, 1352, 1690
TaiI ACGT 1 cut(s) 1420
TaqI TCGA 6 cut(s) 508, 736, 1009, 1178, 1210, 1603
TaqII GACCGA 1 cut(s) 304
TatI WGTACW 1 cut(s) 30
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 2 cut(s) 404, 1186
Tru1I TTAA 4 cut(s) 162, 281, 540, 1551
Tru9I TTAA 4 cut(s) 162, 281, 540, 1551
TscAI CASTG 4 cut(s) 201, 372, 1054, 1594
TseFI GTSAC 3 cut(s) 110, 1138, 1346
TseI GCWGC 3 cut(s) 410, 1276, 1439
Tsp45I GTSAC 3 cut(s) 110, 1138, 1346
TspDTI ATGAA 6 cut(s) 239, 285, 498, 726, 1366, 1506
TspRI CASTG 4 cut(s) 201, 372, 1054, 1594
Vha464I CTTAAG 1 cut(s) 539
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 4 cut(s) 646, 1493, 1547, 1599
XceI RCATGY 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 1209
XmiI GTMKAC 2 cut(s) 378, 965
XmnI GAANNNNTTC 1 cut(s) 945
XspI CTAG 4 cut(s) 50, 704, 876, 1242
ZraI GACGTC 1 cut(s) 1418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.