MD09G1123600.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000498
Physical Location & Seq
Forward (+)
9560124 .. 9565478
5355 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1123600.v1.1.491

Sequence Viewer

Length: 1575 bp
ATGATCCGACTGGCTTTCAGCCCTGATAATTTGATCCAGTCTTTGATTAACAAAGCGAAAGCTGAGCTCGGGTTATGCAAACTGGCAGTGTCTGCTTCAATCTCACCTCAGGTGAACCAAGTTCCTGTTTCCGACTTACCTTTACAATTCACTCCATACAGTCCACGACCGGTTTCATCTCCCACAACCATCGGAGCAGCAAATCCATATAGGGAACTGTCTGGTGATCAGCAACCACTGCAAGCCATAGAGTTTGTTCCACCAGGGTACTCAGATTCAGCGATTGAAGATTATCGCCTCCAAAATCAAATGCAGTTTCTGCCCGAGTTTTCAAGCAATTACTGTTATCATGAACCTGCATTGAGTGTGAGAACCAGTCGAAGGTCTCCAAGCTTGCCTGAATTTCCCCTTAAGGTATGCCATTATTTCAATAAGGGGTTCTGTAAGCATGGAAGCAACTGCAGGTACTTCCATGGCCATCCCATGCCAGAAAGCTTTTCACAGTTTTGCAGCCAAAACTCAAATGAGCTTTCAAACGATGATCACGTTGTCTCCCCTGGCTCCCTTGAAAAGCTAGAGATTGAAATAATTGAGCTTTTGAAATCTAGAAGAGGGTTCCCAATATCAATTGCCTCTTTGCCGATGATGTACTATGAGAAATATGGGAGAACTCTTCAGGCCGAGGGATACCTCACTGAGAGCCAGAGACATGGTAAAGCTGGCTACAGCCTGACAAAGCTTCTTGCTCGATTGAAGAACAGCATTCGCCTTATTGACAGGCCTCACGGACAGCACTCAGTTATATTGGCAGAAGATATCCCAAAATACTTAGAGTATGCTGGTGAGAAAACAGAACCTGGTGGGATTATTGCTGGTTCTCGACAGATATATCTGACCTTTCCAGCCGAGAGTAATTTCACGGAGCAAGATGTTTCCAACTACTTCAACAAATATGGGCCAGTTCAAGATGTACGCATCCCGTGTCAACAGAAGAGGATGTTTGGTTTTGTCACCTTTGTTTATGCAGAGACGGTGAGGCATATTTTGTCAAAAGGGAATCCTCATTTTGTATGCGGGGCTCGTGTGCTGGTGAAACCTTACAGGGAAAAGTCTAGGCTTGTTGACAGGAAGTTTTCGGAGAAGATGCAGCACTCCACGTGCTACAATTCACATTTTATGGATGGAGATTCAGAGCTTCACCCAATGCCCAGAGTTTGTGATAGCGCAAGATTTCTAAGGAAGCAGTTCATAGAGGAAAATGAGCAAGCACTCGAACTTGAGAGAAGGCGCCTCTCGGAGATGCATTTAGCAGCTAAGCCCTTATCCCATCATTTCTATTATGGCTACTCGATGGATGAGCTTAAGCATCCAGAAGCCCATGCAGAGCAAGTGGAATTCCCATCCTCAAAGGAATTTAATTATTTTCTGGATGTTTTGAATAATGGTTCCACCAGTGAGGACAAAATCAGGCACATTAATACTAATTACAGTGGTCAGGATAGCGGTCAAGGAATTAACCTTCCAGAGAGCCCATTCGCGACTCAAATGGCGAGTGGCATATCAACAGTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST-HTH RRM_1 zf-CCCH

Protein Analysis

525

Amino Acids

59.54

Weight (kDa)

6.86

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PABC_AtC3H46 PF23182 1 - 26 1.4e-07 AtC3H46 PABC domain
RRM_1 PF00076 305 - 354 3.7e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05160 AT2G05160 AT2G05160
fragaria_vesca FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900
malus_domestica MD03G1188600.v1.1 MD09G1123600.v1.1 MD17G1114400.v1.1
prunus_persica Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1
pyrus_communis pycom03g14150 pycom09g04760 pycom17g10570
rosa_chinensis RchiOBHm_Chr2g0156481 RchiOBHm_Chr5g0042651
rosa_laevigata RLG00000020916 RLG00000034148
rosa_multiflora Rmu_sc0004355.1_g000004 Rmu_sc0005392.1_g000010
rosa_roxburghii Rroxscaffold_1G00037990 Rroxscaffold_2G00093000
rosa_rugosa Rorug02G0453300 Rorug02G0453400 Rorug02G0453500 Rorug02G0453600 Rorug05G0203500 Rorug05G0203500 Rorug05G0203600.1 Rorug05G0203700
rosa_samantha Rh2AG519700 Rh2BG532000 Rh2CG504700 Rh2DG541000 Rh5AG288800 Rh5BG292900 Rh5CG325300 Rh5DG302800
rosa_wichuraiana Rw2G042840 Rw5G026790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 364, 453
AccB1I GGYRCC 1 cut(s) 1287
AccII CGCG 1 cut(s) 1538
AciI CCGC 2 cut(s) 1074, 1503
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 475
AcsI RAATTY 3 cut(s) 401, 1394, 1412
AcuI CTGAAG 1 cut(s) 659
AcvI CACGTG 1 cut(s) 1158
AcyI GRCGYC 1 cut(s) 1288
AfaI GTAC 4 cut(s) 269, 467, 650, 972
AfiI CCNNNNNNNGG 1 cut(s) 381
AflII CTTAAG 2 cut(s) 410, 1361
AgeI ACCGGT 1 cut(s) 169
AjnI CCWGG 3 cut(s) 262, 556, 856
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 4 cut(s) 390, 556, 700, 1022
AlwI GGATC 1 cut(s) 28
AlwNI CAGNNNCTG 3 cut(s) 92, 319, 857
Ama87I CYCGRG 2 cut(s) 68, 323
AoxI GGCC 4 cut(s) 475, 678, 779, 956
ApeKI GCWGC 4 cut(s) 197, 510, 1147, 1310
ApoI RAATTY 3 cut(s) 401, 1394, 1412
AseI ATTAAT 1 cut(s) 1476
AsiGI ACCGGT 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 1244
AspLEI GCGC 2 cut(s) 1226, 1290
AspS9I GGNCC 1 cut(s) 956
AsuHPI GGTGA 8 cut(s) 96, 124, 236, 854, 1003, 1045, 1102, 1190
AvaI CYCGRG 2 cut(s) 68, 323
AxyI CCTNAGG 1 cut(s) 108
BalI TGGCCA 1 cut(s) 477
BanI GGYRCC 1 cut(s) 1287
BanII GRGCYC 3 cut(s) 69, 1081, 1532
BauI CACGAG 1 cut(s) 1080
BbrPI CACGTG 1 cut(s) 1158
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 4 cut(s) 209, 522, 1159, 1322
BccI CCATC 6 cut(s) 197, 486, 1175, 1335, 1345, 1408
BciT130I CCWGG 3 cut(s) 264, 558, 858
BciVI GTATCC 1 cut(s) 680
BclI TGATCA 2 cut(s) 226, 541
BcoDI GTCTC 4 cut(s) 390, 556, 700, 1022
BfaI CTAG 3 cut(s) 575, 606, 1113
BfmI CTRYAG 2 cut(s) 460, 724
BfoI RGCGCY 1 cut(s) 1291
BfrI CTTAAG 2 cut(s) 410, 1361
BfuAI ACCTGC 2 cut(s) 364, 453
BfuI GTATCC 1 cut(s) 680
BisI GCNGC 4 cut(s) 198, 511, 1148, 1311
BlpI GCTNAGC 2 cut(s) 63, 1314
BlsI GCNGC 4 cut(s) 199, 512, 1149, 1312
Bme1390I CCNGG 3 cut(s) 264, 558, 858
BmeT110I CYCGRG 2 cut(s) 68, 323
BmgT120I GGNCC 1 cut(s) 956
BmiI GGNNCC 4 cut(s) 562, 617, 1289, 1447
BmrFI CCNGG 3 cut(s) 264, 558, 858
BmsI GCATC 4 cut(s) 984, 1134, 1290, 1375
Bpu1102I GCTNAGC 2 cut(s) 63, 1314
BpuEI CTTGAG 1 cut(s) 1298
BsaAI YACGTR 1 cut(s) 1158
BsaHI GRCGYC 1 cut(s) 1288
BsaI GGTCTC 1 cut(s) 390
BsaJI CCNNGG 4 cut(s) 263, 472, 556, 681
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 6 cut(s) 15, 37, 87, 375, 959, 1452
Bse21I CCTNAGG 1 cut(s) 108
BseBI CCWGG 3 cut(s) 264, 558, 858
BseDI CCNNGG 4 cut(s) 263, 472, 556, 681
BseGI GGATG 8 cut(s) 478, 975, 1002, 1186, 1360, 1366, 1400, 1435
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMII CTCAG 5 cut(s) 54, 122, 285, 687, 810
BseNI ACTGG 6 cut(s) 15, 37, 87, 375, 959, 1452
BseXI GCAGC 4 cut(s) 209, 522, 1159, 1322
Bsh1236I CGCG 1 cut(s) 1538
Bsh1285I CGRYCG 1 cut(s) 170
BshFI GGCC 4 cut(s) 477, 680, 781, 958
BshNI GGYRCC 1 cut(s) 1287
BshTI ACCGGT 1 cut(s) 169
BsiEI CGRYCG 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 2 cut(s) 68, 323
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 4 cut(s) 390, 556, 700, 1022
BsmBI CGTCTC 1 cut(s) 1022
BsmI GAATGC 1 cut(s) 762
BsnI GGCC 4 cut(s) 477, 680, 781, 958
Bso31I GGTCTC 1 cut(s) 390
BsoBI CYCGRG 2 cut(s) 68, 323
Bsp1286I GDGCHC 3 cut(s) 69, 1081, 1532
Bsp143I GATC 4 cut(s) 3, 33, 226, 541
Bsp1720I GCTNAGC 2 cut(s) 63, 1314
Bsp19I CCATGG 1 cut(s) 472
Bsp68I TCGCGA 1 cut(s) 1538
BspACI CCGC 2 cut(s) 1074, 1503
BspANI GGCC 4 cut(s) 477, 680, 781, 958
BspCNI CTCAG 5 cut(s) 55, 121, 284, 688, 809
BspFNI CGCG 1 cut(s) 1538
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 4 cut(s) 562, 617, 1289, 1447
BspMAI CTGCAG 1 cut(s) 464
BspMI ACCTGC 2 cut(s) 364, 453
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 1287
BspTI CTTAAG 2 cut(s) 410, 1361
BspTNI GGTCTC 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 6 cut(s) 15, 37, 87, 375, 959, 1452
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 4 cut(s) 263, 472, 556, 681
BssMI GATC 4 cut(s) 3, 33, 226, 541
BssNI GRCGYC 1 cut(s) 1288
BssSI CACGAG 1 cut(s) 1080
BssT1I CCWWGG 1 cut(s) 472
Bst2BI CACGAG 1 cut(s) 1080
Bst2UI CCWGG 3 cut(s) 264, 558, 858
Bst4CI ACNGT 7 cut(s) 161, 219, 344, 504, 1033, 1490, 1567
Bst6I CTCTTC 3 cut(s) 604, 678, 986
BstACI GRCGYC 1 cut(s) 1288
BstAFI CTTAAG 2 cut(s) 410, 1361
BstAPI GCANNNNNTGC 3 cut(s) 92, 238, 319
BstBAI YACGTR 1 cut(s) 1158
BstC8I GCNNGC 4 cut(s) 243, 395, 721, 1266
BstDEI CTNAG 8 cut(s) 63, 108, 271, 696, 796, 829, 1235, 1314
BstDSI CCRYGG 1 cut(s) 472
BstF5I GGATG 8 cut(s) 478, 975, 1002, 1186, 1360, 1366, 1400, 1435
BstFNI CGCG 1 cut(s) 1538
BstH2I RGCGCY 1 cut(s) 1291
BstHHI GCGC 2 cut(s) 1226, 1290
BstKTI GATC 4 cut(s) 6, 36, 229, 544
BstMAI GTCTC 4 cut(s) 390, 556, 700, 1022
BstMBI GATC 4 cut(s) 3, 33, 226, 541
BstMCI CGRYCG 1 cut(s) 170
BstMWI GCNNNNNNNGC 3 cut(s) 92, 238, 319
BstNI CCWGG 3 cut(s) 264, 558, 858
BstSCI CCNGG 3 cut(s) 262, 556, 856
BstSFI CTRYAG 2 cut(s) 460, 724
BstUI CGCG 1 cut(s) 1538
BstV1I GCAGC 4 cut(s) 209, 522, 1159, 1322
BstXI CCANNNNNNTGG 1 cut(s) 710
Bsu36I CCTNAGG 1 cut(s) 108
BsuI GTATCC 1 cut(s) 680
BsuRI GGCC 4 cut(s) 477, 680, 781, 958
BtgI CCRYGG 1 cut(s) 472
BtsCI GGATG 8 cut(s) 478, 975, 1002, 1186, 1360, 1366, 1400, 1435
BtsI GCAGTG 2 cut(s) 93, 236
BtsIMutI CAGTG 5 cut(s) 93, 236, 693, 1459, 1495
BtuMI TCGCGA 1 cut(s) 1538
BveI ACCTGC 2 cut(s) 364, 453
Cac8I GCNNGC 4 cut(s) 243, 395, 721, 1266
CaiI CAGNNNCTG 3 cut(s) 92, 319, 857
CciI TCATGA 1 cut(s) 349
CfoI GCGC 2 cut(s) 1226, 1290
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 956
CsiI ACCWGGT 1 cut(s) 856
Csp6I GTAC 4 cut(s) 268, 466, 649, 971
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 6 cut(s) 350, 449, 473, 484, 710, 1379
CviQI GTAC 4 cut(s) 268, 466, 649, 971
DdeI CTNAG 8 cut(s) 63, 108, 271, 696, 796, 829, 1235, 1314
DinI GGCGCC 1 cut(s) 1289
DpnI GATC 4 cut(s) 5, 35, 228, 543
DpnII GATC 4 cut(s) 3, 33, 226, 541
EaeI YGGCCR 1 cut(s) 475
Eam1104I CTCTTC 3 cut(s) 604, 678, 986
EarI CTCTTC 3 cut(s) 604, 678, 986
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 472
Eco147I AGGCCT 1 cut(s) 781
Eco24I GRGCYC 3 cut(s) 69, 1081, 1532
Eco31I GGTCTC 1 cut(s) 390
Eco32I GATATC 1 cut(s) 817
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 659
Eco72I CACGTG 1 cut(s) 1158
Eco81I CCTNAGG 1 cut(s) 108
Eco88I CYCGRG 2 cut(s) 68, 323
EcoICRI GAGCTC 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 1394
EcoRII CCWGG 3 cut(s) 262, 556, 856
EcoRV GATATC 1 cut(s) 817
EcoT14I CCWWGG 1 cut(s) 472
EcoT22I ATGCAT 1 cut(s) 1305
EcoT38I GRGCYC 3 cut(s) 69, 1081, 1532
EgeI GGCGCC 1 cut(s) 1289
EheI GGCGCC 1 cut(s) 1289
ErhI CCWWGG 1 cut(s) 472
Esp3I CGTCTC 1 cut(s) 1022
FaeI CATG 6 cut(s) 353, 452, 476, 487, 713, 1382
FatI CATG 6 cut(s) 349, 448, 472, 483, 709, 1378
FauI CCCGC 1 cut(s) 1067
FbaI TGATCA 2 cut(s) 226, 541
Fnu4HI GCNGC 4 cut(s) 198, 511, 1148, 1311
FokI GGATG 8 cut(s) 465, 962, 1009, 1193, 1353, 1367, 1387, 1442
FriOI GRGCYC 3 cut(s) 69, 1081, 1532
Fsp4HI GCNGC 4 cut(s) 198, 511, 1148, 1311
FspBI CTAG 3 cut(s) 575, 606, 1113
GlaI GCGC 2 cut(s) 1225, 1289
GluI GCNGC 4 cut(s) 198, 511, 1148, 1311
HaeII RGCGCY 1 cut(s) 1291
HaeIII GGCC 4 cut(s) 477, 680, 781, 958
HapII CCGG 1 cut(s) 170
HhaI GCGC 2 cut(s) 1226, 1290
Hin1I GRCGYC 1 cut(s) 1288
Hin1II CATG 6 cut(s) 353, 452, 476, 487, 713, 1382
Hin6I GCGC 2 cut(s) 1224, 1288
HinP1I GCGC 2 cut(s) 1224, 1288
HincII GTYRAC 2 cut(s) 986, 1123
HindII GTYRAC 2 cut(s) 986, 1123
HindIII AAGCTT 3 cut(s) 391, 493, 737
HinfI GANTC 4 cut(s) 275, 1057, 1187, 1540
HpaII CCGG 1 cut(s) 170
HphI GGTGA 8 cut(s) 96, 124, 236, 854, 1003, 1045, 1102, 1190
Hpy166II GTNNAC 4 cut(s) 115, 164, 986, 1123
Hpy188I TCNGA 8 cut(s) 8, 133, 194, 274, 894, 1138, 1192, 1297
Hpy188III TCNNGA 9 cut(s) 350, 606, 879, 965, 1370, 1427, 1496, 1523, 1537
Hpy8I GTNNAC 4 cut(s) 115, 164, 986, 1123
HpyAV CCTTC 3 cut(s) 375, 1278, 1529
HpyCH4III ACNGT 7 cut(s) 161, 219, 344, 504, 1033, 1490, 1567
HpyCH4IV ACGT 2 cut(s) 546, 1157
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 238, 319
HpyF3I CTNAG 8 cut(s) 63, 108, 271, 696, 796, 829, 1235, 1314
HpySE526I ACGT 2 cut(s) 546, 1157
Hsp92I GRCGYC 1 cut(s) 1288
Hsp92II CATG 6 cut(s) 353, 452, 476, 487, 713, 1382
HspAI GCGC 2 cut(s) 1224, 1288
KasI GGCGCC 1 cut(s) 1287
Ksp22I TGATCA 2 cut(s) 226, 541
Kzo9I GATC 4 cut(s) 3, 33, 226, 541
LmnI GCTCC 3 cut(s) 194, 566, 922
Lsp1109I GCAGC 4 cut(s) 209, 522, 1159, 1322
LweI GCATC 4 cut(s) 984, 1134, 1290, 1375
MabI ACCWGGT 1 cut(s) 856
MaeI CTAG 3 cut(s) 575, 606, 1113
MaeII ACGT 2 cut(s) 546, 1157
MaeIII GTNAC 1 cut(s) 1009
MalI GATC 4 cut(s) 5, 35, 228, 543
MboI GATC 4 cut(s) 3, 33, 226, 541
MboII GAAGA 7 cut(s) 299, 621, 665, 766, 824, 1003, 1153
MfeI CAATTG 1 cut(s) 627
MhlI GDGCHC 3 cut(s) 69, 1081, 1532
MlsI TGGCCA 1 cut(s) 477
MluNI TGGCCA 1 cut(s) 477
Mly113I GGCGCC 1 cut(s) 1288
MlyI GAGTC 1 cut(s) 1534
MmeI TCCRAC 3 cut(s) 31, 156, 960
Mox20I TGGCCA 1 cut(s) 477
Mph1103I ATGCAT 1 cut(s) 1305
MroXI GAANNNNTTC 1 cut(s) 1244
MscI TGGCCA 1 cut(s) 477
MseI TTAA 6 cut(s) 48, 411, 1362, 1416, 1476, 1515
Msp20I TGGCCA 1 cut(s) 477
MspCI CTTAAG 2 cut(s) 410, 1361
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 3 cut(s) 264, 558, 858
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 1 cut(s) 762
MvaI CCWGG 3 cut(s) 264, 558, 858
MvnI CGCG 1 cut(s) 1538
MwoI GCNNNNNNNGC 3 cut(s) 92, 238, 319
NarI GGCGCC 1 cut(s) 1288
NcoI CCATGG 1 cut(s) 472
NdeII GATC 4 cut(s) 3, 33, 226, 541
NlaIII CATG 6 cut(s) 353, 452, 476, 487, 713, 1382
NlaIV GGNNCC 4 cut(s) 562, 617, 1289, 1447
NmeAIII GCCGAG 2 cut(s) 706, 931
NmuCI GTSAC 1 cut(s) 1009
NruI TCGCGA 1 cut(s) 1538
NsiI ATGCAT 1 cut(s) 1305
PagI TCATGA 1 cut(s) 349
PceI AGGCCT 1 cut(s) 781
PcsI WCGNNNNNNNCGW 1 cut(s) 543
PctI GAATGC 1 cut(s) 762
PdmI GAANNNNTTC 1 cut(s) 1244
PfeI GAWTC 3 cut(s) 275, 1057, 1187
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 4 cut(s) 199, 512, 1149, 1312
PleI GAGTC 1 cut(s) 1534
PluTI GGCGCC 1 cut(s) 1291
PmaCI CACGTG 1 cut(s) 1158
PmlI CACGTG 1 cut(s) 1158
PpsI GAGTC 1 cut(s) 1534
Ppu21I YACGTR 1 cut(s) 1158
PshBI ATTAAT 1 cut(s) 1476
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 3 cut(s) 262, 556, 856
PspCI CACGTG 1 cut(s) 1158
PspGI CCWGG 3 cut(s) 262, 556, 856
PspN4I GGNNCC 4 cut(s) 562, 617, 1289, 1447
PspPI GGNCC 1 cut(s) 956
PstI CTGCAG 1 cut(s) 464
PstNI CAGNNNCTG 3 cut(s) 92, 319, 857
RruI TCGCGA 1 cut(s) 1538
RsaI GTAC 4 cut(s) 269, 467, 650, 972
RsaNI GTAC 4 cut(s) 268, 466, 649, 971
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 6 cut(s) 48, 411, 1362, 1416, 1476, 1515
SatI GCNGC 4 cut(s) 198, 511, 1148, 1311
Sau3AI GATC 4 cut(s) 3, 33, 226, 541
Sau96I GGNCC 1 cut(s) 956
SchI GAGTC 1 cut(s) 1534
ScrFI CCNGG 3 cut(s) 264, 558, 858
SduI GDGCHC 3 cut(s) 69, 1081, 1532
SexAI ACCWGGT 1 cut(s) 856
SfaNI GCATC 4 cut(s) 984, 1134, 1290, 1375
SfcI CTRYAG 2 cut(s) 460, 724
SfoI GGCGCC 1 cut(s) 1289
SmlI CTYRAG 3 cut(s) 410, 1277, 1361
SmoI CTYRAG 3 cut(s) 410, 1277, 1361
SseBI AGGCCT 1 cut(s) 781
SsiI CCGC 2 cut(s) 1074, 1503
SspDI GGCGCC 1 cut(s) 1287
SspMI CTAG 3 cut(s) 575, 606, 1113
SstI GAGCTC 1 cut(s) 69
StuI AGGCCT 1 cut(s) 781
StyD4I CCNGG 3 cut(s) 262, 556, 856
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 7 cut(s) 161, 219, 344, 504, 1033, 1490, 1567
TaiI ACGT 2 cut(s) 549, 1160
TaqI TCGA 5 cut(s) 379, 748, 880, 1272, 1349
TatI WGTACW 1 cut(s) 648
TfiI GAWTC 3 cut(s) 275, 1057, 1187
Tru1I TTAA 6 cut(s) 48, 411, 1362, 1416, 1476, 1515
Tru9I TTAA 6 cut(s) 48, 411, 1362, 1416, 1476, 1515
TscAI CASTG 5 cut(s) 93, 243, 700, 1459, 1495
TseFI GTSAC 1 cut(s) 1009
TseI GCWGC 4 cut(s) 197, 510, 1147, 1310
Tsp45I GTSAC 1 cut(s) 1009
TspDTI ATGAA 3 cut(s) 165, 366, 1237
TspGWI ACGGA 2 cut(s) 801, 935
TspRI CASTG 5 cut(s) 93, 243, 700, 1459, 1495
Vha464I CTTAAG 2 cut(s) 410, 1361
VspI ATTAAT 1 cut(s) 1476
XapI RAATTY 3 cut(s) 401, 1394, 1412
XbaI TCTAGA 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 1244
XspI CTAG 3 cut(s) 575, 606, 1113
Zsp2I ATGCAT 1 cut(s) 1305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.