Rorug02G0453300

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000498
Physical Location & Seq
Reverse (-)
58277548 .. 58278333
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0453300.1

Sequence Viewer

Length: 615 bp
ATGGCGAACGTGTTTGGCGACCCCATAACCGACTTGAACATAACCGCAGTTGACAGGGCACGCGTGGCAATTCACAAGAAAAACGCCGACATGAAGGATAAAAACGCCCGCACTTACTTGGAGAAACTGAAGGACGAGTGGGAGAAGGAGTTTCCCAATAGAGTATGCACACTTGTCCTCATTTACAATGCTACTGGGAGCACTATGGCTCTGGCTCATGTTACAGATCATGATGGGCACATTGGAGAAGCCCCGTACCCGATAGAAATTCAAAATGGCCAGTGGGGTGCATTTTTGCATGTCCAAGACCAAGAAAGTGGAGCATCTGCGGCACGTATGGTGTATAACAGCGAGGACCAGCTGGTTTGCCACAAGCTGGCGTGGTTCAGCTCAACAGCTTGTCACTGGGTCTGGGCGGCGACCCGTGAAAACACTGATGATACAAGGGACAGCATAAATGAAAATAGTCAAAATACTACTCAGCGTTGCAGCCGCTACTACTACACTGATTCATGGAATGGATGGCTGTCAACTATAACAACTGGTGGTACCACTACACCAGTAGTGGAAGCAACATTCACTTTAAAAAATCCCGTACCTGCCAACAGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST-HTH RRM_1 zf-CCCH

Protein Analysis

204

Amino Acids

22.86

Weight (kDa)

5.44

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 20 - 131 2.4e-23 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05160 AT2G05160 AT2G05160
fragaria_vesca FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900
malus_domestica MD03G1188600.v1.1 MD09G1123600.v1.1 MD17G1114400.v1.1
prunus_persica Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1
pyrus_communis pycom03g14150 pycom09g04760 pycom17g10570
rosa_chinensis RchiOBHm_Chr2g0156481 RchiOBHm_Chr5g0042651
rosa_laevigata RLG00000020916 RLG00000034148
rosa_multiflora Rmu_sc0004355.1_g000004 Rmu_sc0005392.1_g000010
rosa_roxburghii Rroxscaffold_1G00037990 Rroxscaffold_2G00093000
rosa_rugosa Rorug02G0453300 Rorug02G0453400 Rorug02G0453500 Rorug02G0453600 Rorug05G0203500 Rorug05G0203500 Rorug05G0203600.1 Rorug05G0203700
rosa_samantha Rh2AG519700 Rh2BG532000 Rh2CG504700 Rh2DG541000 Rh5AG288800 Rh5BG292900 Rh5CG325300 Rh5DG302800
rosa_wichuraiana Rw2G042840 Rw5G026790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 607
Acc65I GGTACC 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 548
AccB7I CCANNNNNTGG 1 cut(s) 376
AccII CGCG 1 cut(s) 63
AciI CCGC 5 cut(s) 45, 109, 329, 416, 493
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 3 cut(s) 257, 550, 597
AfiI CCNNNNNNNGG 1 cut(s) 376
AflIII ACRYGT 2 cut(s) 9, 61
AgsI TTSAA 2 cut(s) 37, 272
AluBI AGCT 4 cut(s) 361, 376, 390, 398
AluI AGCT 4 cut(s) 361, 376, 390, 398
Alw21I GWGCWC 1 cut(s) 203
AlwNI CAGNNNCTG 1 cut(s) 612
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 489
ApoI RAATTY 1 cut(s) 267
Asp718I GGTACC 1 cut(s) 548
AspS9I GGNCC 1 cut(s) 355
AvaII GGWCC 1 cut(s) 355
BaeGI GKGCMC 2 cut(s) 61, 240
BalI TGGCCA 1 cut(s) 279
BanI GGYRCC 1 cut(s) 548
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 501
BccI CCATC 2 cut(s) 227, 516
BfuAI ACCTGC 1 cut(s) 607
BisI GCNGC 4 cut(s) 330, 417, 490, 493
BlsI GCNGC 4 cut(s) 331, 418, 491, 494
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 550
BmrI ACTGGG 2 cut(s) 204, 415
BmsI GCATC 1 cut(s) 332
BmuI ACTGGG 2 cut(s) 204, 415
BsaAI YACGTR 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 5 cut(s) 199, 280, 410, 547, 560
BseGI GGATG 1 cut(s) 527
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 5 cut(s) 199, 280, 410, 547, 560
BseSI GKGCMC 2 cut(s) 61, 240
BseXI GCAGC 1 cut(s) 501
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 548
BsiHKAI GWGCWC 1 cut(s) 203
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 461
BsnI GGCC 1 cut(s) 279
Bsp1286I GDGCHC 3 cut(s) 61, 203, 240
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 5 cut(s) 45, 109, 329, 416, 493
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 493
BspFNI CGCG 1 cut(s) 63
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 550
BspMI ACCTGC 1 cut(s) 607
BspT107I GGYRCC 1 cut(s) 548
BsrI ACTGG 5 cut(s) 199, 280, 410, 547, 560
BssMI GATC 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 608
BstBAI YACGTR 1 cut(s) 335
BstC8I GCNNGC 3 cut(s) 61, 109, 378
BstDEI CTNAG 1 cut(s) 480
BstF5I GGATG 1 cut(s) 527
BstFNI CGCG 1 cut(s) 63
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 3 cut(s) 65, 329, 608
BstNSI RCATGY 1 cut(s) 302
BstSLI GKGCMC 2 cut(s) 61, 240
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 501
BstXI CCANNNNNNTGG 1 cut(s) 317
BsuRI GGCC 1 cut(s) 279
BtsCI GGATG 1 cut(s) 527
BtsIMutI CAGTG 5 cut(s) 287, 403, 432, 504, 613
BveI ACCTGC 1 cut(s) 607
Cac8I GCNNGC 3 cut(s) 61, 109, 378
CaiI CAGNNNCTG 1 cut(s) 612
CciI TCATGA 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 355
Csp6I GTAC 3 cut(s) 256, 549, 596
CviAII CATG 5 cut(s) 91, 218, 230, 299, 513
CviQI GTAC 3 cut(s) 256, 549, 596
DdeI CTNAG 1 cut(s) 480
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DraI TTTAAA 1 cut(s) 585
EaeI YGGCCR 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 149
FaeI CATG 5 cut(s) 94, 221, 233, 302, 516
FaqI GGGAC 1 cut(s) 461
FatI CATG 5 cut(s) 90, 217, 229, 298, 512
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 4 cut(s) 330, 417, 490, 493
FokI GGATG 1 cut(s) 534
Fsp4HI GCNGC 4 cut(s) 330, 417, 490, 493
GluI GCNGC 4 cut(s) 330, 417, 490, 493
HaeIII GGCC 1 cut(s) 279
Hin1II CATG 5 cut(s) 94, 221, 233, 302, 516
HincII GTYRAC 2 cut(s) 52, 531
HindII GTYRAC 2 cut(s) 52, 531
HinfI GANTC 1 cut(s) 509
Hpy166II GTNNAC 2 cut(s) 52, 531
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 2 cut(s) 52, 531
HpyAV CCTTC 3 cut(s) 88, 124, 139
HpyCH4III ACNGT 1 cut(s) 608
HpyCH4IV ACGT 2 cut(s) 9, 334
HpyCH4V TGCA 4 cut(s) 168, 290, 298, 489
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 329, 608
HpyF3I CTNAG 1 cut(s) 480
HpySE526I ACGT 2 cut(s) 9, 334
Hsp92II CATG 5 cut(s) 94, 221, 233, 302, 516
KpnI GGTACC 1 cut(s) 552
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 198, 320
Lsp1109I GCAGC 1 cut(s) 501
LweI GCATC 1 cut(s) 332
MaeII ACGT 2 cut(s) 9, 334
MaeIII GTNAC 2 cut(s) 220, 401
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MhlI GDGCHC 3 cut(s) 61, 203, 240
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 2 cut(s) 69, 267
MluI ACGCGT 1 cut(s) 61
MluNI TGGCCA 1 cut(s) 279
MnlI CCTC 2 cut(s) 188, 346
Mox20I TGGCCA 1 cut(s) 279
MscI TGGCCA 1 cut(s) 279
MseI TTAA 1 cut(s) 584
Msp20I TGGCCA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 361
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 3 cut(s) 65, 329, 608
NdeII GATC 1 cut(s) 226
NlaIII CATG 5 cut(s) 94, 221, 233, 302, 516
NlaIV GGNNCC 1 cut(s) 550
NmuCI GTSAC 1 cut(s) 401
NspI RCATGY 1 cut(s) 302
PagI TCATGA 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PfeI GAWTC 1 cut(s) 509
PflMI CCANNNNNTGG 1 cut(s) 376
PkrI GCNGC 4 cut(s) 331, 418, 491, 494
Ppu21I YACGTR 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 550
PspPI GGNCC 1 cut(s) 355
PstNI CAGNNNCTG 1 cut(s) 612
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 3 cut(s) 257, 550, 597
RsaNI GTAC 3 cut(s) 256, 549, 596
SaqAI TTAA 1 cut(s) 584
SatI GCNGC 4 cut(s) 330, 417, 490, 493
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 355
SduI GDGCHC 3 cut(s) 61, 203, 240
SetI ASST 7 cut(s) 12, 337, 363, 378, 392, 400, 601
SfaNI GCATC 1 cut(s) 332
SinI GGWCC 1 cut(s) 355
Sse9I AATT 2 cut(s) 69, 267
SsiI CCGC 5 cut(s) 45, 109, 329, 416, 493
TaaI ACNGT 1 cut(s) 608
TaiI ACGT 2 cut(s) 12, 337
TasI AATT 2 cut(s) 69, 267
TauI GCSGC 3 cut(s) 332, 419, 495
TfiI GAWTC 1 cut(s) 509
Tru1I TTAA 1 cut(s) 584
Tru9I TTAA 1 cut(s) 584
TscAI CASTG 5 cut(s) 287, 410, 439, 511, 613
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 1 cut(s) 489
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 3 cut(s) 107, 474, 501
TspRI CASTG 5 cut(s) 287, 410, 439, 511, 613
Van91I CCANNNNNTGG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 1 cut(s) 267
XceI RCATGY 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.