Rh5CG325300

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000498
Physical Location & Seq
Reverse (-)
36005776 .. 36010458
4683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG325300.1

Sequence Viewer

Length: 1788 bp
ATGATGGATTTTTCGGACTCCACGAAACTTGTTTTTGGTAGAATACAGGAGGTAGACCCAGAAAATGTTACAAAGATTATAGGTTATCTTCTTTTACAAGGTCATGGGGAACACGAAATGGCTCGCTTGGCCCTGGCTCCAGACCATCTGTTTCACCAAGTGGTGCTGAAAGCCAAGGCTGAACTTCAGCGGTTGGCTAACAAATCAGTGTCATCCCCAATCTCACCTTCCATAAATCCACCGACCGCTGCTTTCGCCCCATTTTCGCCTGTTTCTTCTAGGCCTCCTGCAGCCTTTCGGCTCCCAACCCCCTGTTGGGATCCCCAGCTTGTTTCTAAGCAGAACATGGATTTCATGCCATTCGGATTCTCCGATTCTACTGAGGAACTGCAAAACCAGGCTCGATTTTTGAGTTTTGAGGATCAAATGGAACCACTCAATTCCGGGATTTCAGGATACCCTGATGAGTACTATTATCGGGATGCTACACTCGGGGGAAGCTTAAGTCCTAGACCAGGTAGACGATTTTCAAGTCTAGAGTTTCCCGTTAAGATTTGTCACTACTTCAGTAAGGGCTTTTGTAAGCATGGAAGCAGCTGTAGGTATTACCATGGACAAGTGATTCCTGAGAGCTTCTCTCAGATGTATGGGAATGATGGCATTATTGATGATCATGTTATCTCGCCCATGTCTCTTGAGAAGTTGGAGTGGGAAATCGTCGAGCTGCTTAGATCAAGAAGGGGTACTCCTATTTCAATTGCTTCTCTGCCAATGATGTATTATGAGAAATATGGAAAATCTCTTCAAGCAGAAGGCTACCTCACCGAAAGCCAGAGACATGGGAAAGCTGGTTATAGTTTGACAAAGCTTCTTGCTCGGCTTGGAAGCAGTATACGGCTGATTGACAGGCCTCATGGGCAGCATGCAATAATTTTGGCAGAAGACTCATTAAAATACATGGACCATCGGAATGAGAGAGGTGATCCTGGTCCAATTGTTAGTGGTTCTCGGCAAATATATTTAACATTTCCAGCTGACAGCACCTTTAGTGAAGATGATGTCTCCAACTACTTCAACACCTTTGGCCCTGTTGAAGATGTAAGGATCCCCTGCCAACCGAAAAGGATGTTTGGGTTTGTAACCTTTGTTAATGCAGACACTGTGACAATGATTTTGTCAAAAGGAAATCCTCATTTTGTTTGTGGGGCTCGTGTTCTTGTGAAACCTTACAGGGAAAAATCAAAGCTTGCTGAAAGAAAGTACCAAGAGAGAATGGAGCCAGCTGATCATTATTCTCCACACTACTCAGACATGGAACCCGAGTTTCATTCGATGTCAAGATGGTGTCATAATTCTAGATTCCTGCAAAAGAAGCTGCTGGAAGAGCAAGAATTTGCACTTGAACTTGAGAGGAGTAGGCTGGCTGAGCTGCATTTTATGCAAAAGCCAGTTGCAAATCAGCCCTATTCTGGTTACTTAATGGATGGGCGAAAAGTCTCGGAAGGTTCTGTAGTTTCTATCGTTTTATTAACTCTGGTTGGAAAGAGTAATTTTTTTTTCCTTCACCTACAATATTTCTTATTTCCTGTAGTTCATGCAGATAATTTCAACGTCCCGCCTGCAGAATGTTTTGATTATCTGTTAGATGTTATAAACAATGGGTCCACAAGTGATAATAAACCCAAACATACAGGCACCAACTACACCGAGCAAGAGAGTCAAGGACTTAATCTCCCAGATAGCCCATTTGCAACTTCGATAGCTAGTGGCATTTCAGCTGTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST-HTH RRM_1 zf-CCCH

Protein Analysis

595

Amino Acids

67.28

Weight (kDa)

6.17

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PABC_AtC3H46 PF23182 2 - 66 5.9e-29 AtC3H46 PABC domain
RRM_1 PF00076 349 - 396 4.1e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05160 AT2G05160 AT2G05160
fragaria_vesca FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900
malus_domestica MD03G1188600.v1.1 MD09G1123600.v1.1 MD17G1114400.v1.1
prunus_persica Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1
pyrus_communis pycom03g14150 pycom09g04760 pycom17g10570
rosa_chinensis RchiOBHm_Chr2g0156481 RchiOBHm_Chr5g0042651
rosa_laevigata RLG00000020916 RLG00000034148
rosa_multiflora Rmu_sc0004355.1_g000004 Rmu_sc0005392.1_g000010
rosa_roxburghii Rroxscaffold_1G00037990 Rroxscaffold_2G00093000
rosa_rugosa Rorug02G0453300 Rorug02G0453400 Rorug02G0453500 Rorug02G0453600 Rorug05G0203500 Rorug05G0203500 Rorug05G0203600.1 Rorug05G0203700
rosa_samantha Rh2AG519700 Rh2BG532000 Rh2CG504700 Rh2DG541000 Rh5AG288800 Rh5BG292900 Rh5CG325300 Rh5DG302800
rosa_wichuraiana Rw2G042840 Rw5G026790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1652
AccB1I GGYRCC 1 cut(s) 1694
AccI GTMKAC 3 cut(s) 54, 520, 892
AciI CCGC 3 cut(s) 190, 246, 1616
AclWI GGATC 6 cut(s) 314, 327, 429, 977, 1099, 1112
AcsI RAATTY 1 cut(s) 1391
AcuI CTGAAG 2 cut(s) 170, 550
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 3 cut(s) 470, 745, 1262
AfiI CCNNNNNNNGG 4 cut(s) 315, 316, 515, 1469
AflII CTTAAG 1 cut(s) 502
AgsI TTSAA 7 cut(s) 531, 756, 806, 1075, 1094, 1403, 1609
AjnI CCWGG 4 cut(s) 132, 396, 514, 985
AjuI GAANNNNNNNTTGG 2 cut(s) 211, 243
Alw26I GTCTC 4 cut(s) 696, 829, 1066, 1501
AlwI GGATC 6 cut(s) 314, 327, 429, 977, 1099, 1112
AlwNI CAGNNNCTG 1 cut(s) 1160
Ama87I CYCGRG 2 cut(s) 491, 1319
AoxI GGCC 4 cut(s) 129, 281, 908, 1084
ApeKI GCWGC 7 cut(s) 248, 290, 594, 724, 919, 1375, 1429
ApoI RAATTY 1 cut(s) 1391
ArsI GACNNNNNNTTYG 2 cut(s) 1156, 1188
AspS9I GGNCC 5 cut(s) 130, 961, 989, 1085, 1662
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 5 cut(s) 146, 216, 814, 992, 1556
AvaI CYCGRG 2 cut(s) 491, 1319
AvaII GGWCC 3 cut(s) 961, 989, 1662
BamHI GGATCC 2 cut(s) 319, 1104
BanI GGYRCC 1 cut(s) 1694
BanII GRGCYC 1 cut(s) 1210
BauI CACGAG 1 cut(s) 1209
BbsI GAAGAC 1 cut(s) 948
BbvI GCAGC 7 cut(s) 235, 302, 606, 711, 931, 1362, 1416
BccI CCATC 5 cut(s) 153, 650, 972, 1335, 1478
BceAI ACGGC 1 cut(s) 911
BciT130I CCWGG 4 cut(s) 134, 398, 516, 987
BciVI GTATCC 1 cut(s) 449
BclI TGATCA 2 cut(s) 670, 1285
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 4 cut(s) 696, 829, 1066, 1501
BfaI CTAG 5 cut(s) 279, 510, 536, 1356, 1764
BfmI CTRYAG 5 cut(s) 288, 598, 1509, 1587, 1620
BfrI CTTAAG 1 cut(s) 502
BfuI GTATCC 1 cut(s) 449
BglI GCCNNNNNGGC 1 cut(s) 916
BisI GCNGC 7 cut(s) 249, 291, 595, 725, 920, 1376, 1430
BlpI GCTNAGC 1 cut(s) 1425
BlsI GCNGC 7 cut(s) 250, 292, 596, 726, 921, 1377, 1431
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 5 cut(s) 134, 398, 445, 516, 987
Bme18I GGWCC 3 cut(s) 961, 989, 1662
BmeT110I CYCGRG 2 cut(s) 491, 1319
BmgT120I GGNCC 5 cut(s) 130, 961, 989, 1085, 1662
BmiI GGNNCC 9 cut(s) 138, 302, 321, 432, 1106, 1278, 1317, 1663, 1696
BmrFI CCNGG 5 cut(s) 134, 398, 445, 516, 987
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 948
BplI GAGNNNNNCTC 4 cut(s) 620, 652, 622, 654
BpmI CTGGAG 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 1425
BpuEI CTTGAG 2 cut(s) 716, 1427
BpuMI CCSGG 1 cut(s) 445
BsaJI CCNNGG 3 cut(s) 132, 174, 610
BsaXI ACNNNNNCTCC 2 cut(s) 1716, 1746
Bsc4I CCNNNNNNNGG 4 cut(s) 315, 316, 515, 1469
Bse1I ACTGG 1 cut(s) 1448
BseBI CCWGG 4 cut(s) 134, 398, 516, 987
BseDI CCNNGG 3 cut(s) 132, 174, 610
BseGI GGATG 4 cut(s) 212, 487, 1131, 1489
BseLI CCNNNNNNNGG 4 cut(s) 315, 316, 515, 1469
BseMII CTCAG 5 cut(s) 372, 618, 653, 1320, 1416
BseNI ACTGG 1 cut(s) 1448
BseRI GAGGAG 1 cut(s) 1426
BseXI GCAGC 7 cut(s) 235, 302, 606, 711, 931, 1362, 1416
BseYI CCCAGC 1 cut(s) 324
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 4 cut(s) 131, 283, 910, 1086
BshNI GGYRCC 1 cut(s) 1694
BsiEI CGRYCG 1 cut(s) 246
BsiHKCI CYCGRG 2 cut(s) 491, 1319
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 1598
BslI CCNNNNNNNGG 4 cut(s) 315, 316, 515, 1469
BsmAI GTCTC 4 cut(s) 696, 829, 1066, 1501
BsmFI GGGAC 1 cut(s) 1598
BsnI GGCC 4 cut(s) 131, 283, 910, 1086
BsoBI CYCGRG 2 cut(s) 491, 1319
Bsp1286I GDGCHC 1 cut(s) 1210
Bsp143I GATC 7 cut(s) 319, 421, 670, 731, 982, 1104, 1285
Bsp1720I GCTNAGC 1 cut(s) 1425
Bsp19I CCATGG 1 cut(s) 610
BspACI CCGC 3 cut(s) 190, 246, 1616
BspANI GGCC 4 cut(s) 131, 283, 910, 1086
BspCNI CTCAG 5 cut(s) 373, 619, 652, 1319, 1417
BspLI GGNNCC 9 cut(s) 138, 302, 321, 432, 1106, 1278, 1317, 1663, 1696
BspMAI CTGCAG 2 cut(s) 292, 1624
BspPI GGATC 6 cut(s) 314, 327, 429, 977, 1099, 1112
BspQI GCTCTTC 1 cut(s) 1377
BspT107I GGYRCC 1 cut(s) 1694
BspTI CTTAAG 1 cut(s) 502
BsrI ACTGG 1 cut(s) 1448
BssECI CCNNGG 3 cut(s) 132, 174, 610
BssMI GATC 7 cut(s) 319, 421, 670, 731, 982, 1104, 1285
BssNAI GTATAC 1 cut(s) 893
BssSI CACGAG 1 cut(s) 1209
BssT1I CCWWGG 2 cut(s) 174, 610
Bst1107I GTATAC 1 cut(s) 893
Bst2BI CACGAG 1 cut(s) 1209
Bst2UI CCWGG 4 cut(s) 134, 398, 516, 987
Bst4CI ACNGT 1 cut(s) 1162
Bst6I CTCTTC 2 cut(s) 807, 1377
BstAFI CTTAAG 1 cut(s) 502
BstAPI GCANNNNNTGC 1 cut(s) 1438
BstC8I GCNNGC 6 cut(s) 124, 924, 1248, 1281, 1422, 1620
BstDEI CTNAG 7 cut(s) 336, 381, 627, 639, 728, 1306, 1425
BstDSI CCRYGG 1 cut(s) 610
BstENI CCTNNNNNAGG 1 cut(s) 513
BstF5I GGATG 4 cut(s) 212, 487, 1131, 1489
BstKTI GATC 7 cut(s) 322, 424, 673, 734, 985, 1107, 1288
BstMAI GTCTC 4 cut(s) 696, 829, 1066, 1501
BstMBI GATC 7 cut(s) 319, 421, 670, 731, 982, 1104, 1285
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 7 cut(s) 128, 254, 916, 1372, 1384, 1426, 1438
BstNI CCWGG 4 cut(s) 134, 398, 516, 987
BstNSI RCATGY 1 cut(s) 926
BstSCI CCNGG 5 cut(s) 132, 396, 443, 514, 985
BstSFI CTRYAG 5 cut(s) 288, 598, 1509, 1587, 1620
BstV1I GCAGC 7 cut(s) 235, 302, 606, 711, 931, 1362, 1416
BstV2I GAAGAC 1 cut(s) 948
BstX2I RGATCY 2 cut(s) 319, 1104
BstXI CCANNNNNNTGG 1 cut(s) 839
BstYI RGATCY 2 cut(s) 319, 1104
BstZ17I GTATAC 1 cut(s) 893
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 4 cut(s) 131, 283, 910, 1086
BtgI CCRYGG 1 cut(s) 610
BtsCI GGATG 4 cut(s) 212, 487, 1131, 1489
BtsIMutI CAGTG 2 cut(s) 213, 1158
Cac8I GCNNGC 6 cut(s) 124, 924, 1248, 1281, 1422, 1620
CaiI CAGNNNCTG 1 cut(s) 1160
Cfr13I GGNCC 5 cut(s) 130, 961, 989, 1085, 1662
CsiI ACCWGGT 1 cut(s) 514
Csp6I GTAC 3 cut(s) 469, 744, 1261
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CviQI GTAC 3 cut(s) 469, 744, 1261
DdeI CTNAG 7 cut(s) 336, 381, 627, 639, 728, 1306, 1425
DpnI GATC 7 cut(s) 321, 423, 672, 733, 984, 1106, 1287
DpnII GATC 7 cut(s) 319, 421, 670, 731, 982, 1104, 1285
DraIII CACNNNGTG 1 cut(s) 160
Eam1104I CTCTTC 2 cut(s) 807, 1377
EarI CTCTTC 2 cut(s) 807, 1377
Eco130I CCWWGG 2 cut(s) 174, 610
Eco147I AGGCCT 2 cut(s) 283, 910
Eco24I GRGCYC 1 cut(s) 1210
Eco47I GGWCC 3 cut(s) 961, 989, 1662
Eco57I CTGAAG 2 cut(s) 170, 550
Eco88I CYCGRG 2 cut(s) 491, 1319
EcoNI CCTNNNNNAGG 1 cut(s) 513
EcoRII CCWGG 4 cut(s) 132, 396, 514, 985
EcoT14I CCWWGG 2 cut(s) 174, 610
EcoT38I GRGCYC 1 cut(s) 1210
ErhI CCWWGG 2 cut(s) 174, 610
FaqI GGGAC 1 cut(s) 1598
FauI CCCGC 1 cut(s) 1623
FbaI TGATCA 2 cut(s) 670, 1285
FblI GTMKAC 3 cut(s) 54, 520, 892
Fnu4HI GCNGC 7 cut(s) 249, 291, 595, 725, 920, 1376, 1430
FokI GGATG 4 cut(s) 199, 494, 1138, 1496
FriOI GRGCYC 1 cut(s) 1210
Fsp4HI GCNGC 7 cut(s) 249, 291, 595, 725, 920, 1376, 1430
FspBI CTAG 5 cut(s) 279, 510, 536, 1356, 1764
GluI GCNGC 7 cut(s) 249, 291, 595, 725, 920, 1376, 1430
GsaI CCCAGC 1 cut(s) 328
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 4 cut(s) 131, 283, 910, 1086
HapII CCGG 1 cut(s) 444
HindIII AAGCTT 3 cut(s) 499, 866, 1244
HinfI GANTC 7 cut(s) 17, 366, 374, 622, 944, 1359, 1717
HpaII CCGG 1 cut(s) 444
HphI GGTGA 5 cut(s) 146, 216, 814, 992, 1556
Hpy166II GTNNAC 4 cut(s) 55, 521, 893, 1665
Hpy188I TCNGA 7 cut(s) 16, 365, 373, 642, 969, 1309, 1501
Hpy188III TCNNGA 9 cut(s) 140, 453, 479, 536, 626, 695, 735, 1338, 1356
Hpy8I GTNNAC 4 cut(s) 55, 521, 893, 1665
Hpy99I CGWCG 1 cut(s) 722
HpyAV CCTTC 5 cut(s) 237, 732, 806, 1496, 1571
HpyCH4III ACNGT 1 cut(s) 1162
HpyCH4IV ACGT 1 cut(s) 1611
HpyF10VI GCNNNNNNNGC 7 cut(s) 128, 254, 916, 1372, 1384, 1426, 1438
HpyF3I CTNAG 7 cut(s) 336, 381, 627, 639, 728, 1306, 1425
HpySE526I ACGT 1 cut(s) 1611
Ksp22I TGATCA 2 cut(s) 670, 1285
Kzo9I GATC 7 cut(s) 319, 421, 670, 731, 982, 1104, 1285
LguI GCTCTTC 1 cut(s) 1377
LmnI GCTCC 3 cut(s) 142, 306, 1276
Lsp1109I GCAGC 7 cut(s) 235, 302, 606, 711, 931, 1362, 1416
LweI GCATC 1 cut(s) 472
MabI ACCWGGT 1 cut(s) 514
MaeI CTAG 5 cut(s) 279, 510, 536, 1356, 1764
MaeII ACGT 1 cut(s) 1611
MaeIII GTNAC 5 cut(s) 67, 557, 1138, 1162, 1472
MalI GATC 7 cut(s) 321, 423, 672, 733, 984, 1106, 1287
MboI GATC 7 cut(s) 319, 421, 670, 731, 982, 1104, 1285
MboII GAAGA 7 cut(s) 80, 267, 794, 953, 1064, 1106, 1394
MfeI CAATTG 2 cut(s) 756, 993
MflI RGATCY 2 cut(s) 319, 1104
MhlI GDGCHC 1 cut(s) 1210
MluCI AATT 8 cut(s) 439, 756, 930, 993, 1351, 1391, 1549, 1603
MlyI GAGTC 3 cut(s) 11, 938, 1726
MmeI TCCRAC 3 cut(s) 684, 1089, 1519
MnlI CCTC 9 cut(s) 43, 294, 376, 412, 830, 921, 971, 1200, 1404
MseI TTAA 8 cut(s) 503, 549, 950, 1022, 1149, 1478, 1529, 1728
MslI CAYNNNNRTG 1 cut(s) 969
MspA1I CMGCKG 6 cut(s) 190, 248, 597, 1034, 1283, 1778
MspCI CTTAAG 1 cut(s) 502
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 5 cut(s) 134, 398, 445, 516, 987
MunI CAATTG 2 cut(s) 756, 993
MvaI CCWGG 4 cut(s) 134, 398, 516, 987
MwoI GCNNNNNNNGC 7 cut(s) 128, 254, 916, 1372, 1384, 1426, 1438
NciI CCSGG 1 cut(s) 445
NcoI CCATGG 1 cut(s) 610
NdeII GATC 7 cut(s) 319, 421, 670, 731, 982, 1104, 1285
NlaIV GGNNCC 9 cut(s) 138, 302, 321, 432, 1106, 1278, 1317, 1663, 1696
NmeAIII GCCGAG 2 cut(s) 856, 988
NmuCI GTSAC 2 cut(s) 557, 1162
NspI RCATGY 1 cut(s) 926
PaeI GCATGC 1 cut(s) 926
PceI AGGCCT 2 cut(s) 283, 910
PciSI GCTCTTC 1 cut(s) 1377
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 369
PfeI GAWTC 4 cut(s) 366, 374, 622, 1359
PfoI TCCNGGA 1 cut(s) 443
PkrI GCNGC 7 cut(s) 250, 292, 596, 726, 921, 1377, 1431
PleI GAGTC 3 cut(s) 11, 938, 1725
PpsI GAGTC 3 cut(s) 11, 938, 1725
PsiI TTATAA 1 cut(s) 1652
Psp6I CCWGG 4 cut(s) 132, 396, 514, 985
PspFI CCCAGC 1 cut(s) 324
PspGI CCWGG 4 cut(s) 132, 396, 514, 985
PspN4I GGNNCC 9 cut(s) 138, 302, 321, 432, 1106, 1278, 1317, 1663, 1696
PspPI GGNCC 5 cut(s) 130, 961, 989, 1085, 1662
PstI CTGCAG 2 cut(s) 292, 1624
PstNI CAGNNNCTG 1 cut(s) 1160
PsuI RGATCY 2 cut(s) 319, 1104
PvuII CAGCTG 4 cut(s) 597, 1034, 1283, 1778
RsaI GTAC 3 cut(s) 470, 745, 1262
RsaNI GTAC 3 cut(s) 469, 744, 1261
RseI CAYNNNNRTG 1 cut(s) 969
SapI GCTCTTC 1 cut(s) 1377
SaqAI TTAA 8 cut(s) 503, 549, 950, 1022, 1149, 1478, 1529, 1728
SatI GCNGC 7 cut(s) 249, 291, 595, 725, 920, 1376, 1430
Sau3AI GATC 7 cut(s) 319, 421, 670, 731, 982, 1104, 1285
Sau96I GGNCC 5 cut(s) 130, 961, 989, 1085, 1662
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 3 cut(s) 11, 938, 1726
ScrFI CCNGG 5 cut(s) 134, 398, 445, 516, 987
SduI GDGCHC 1 cut(s) 1210
SexAI ACCWGGT 1 cut(s) 514
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 5 cut(s) 288, 598, 1509, 1587, 1620
SinI GGWCC 3 cut(s) 961, 989, 1662
SmiMI CAYNNNNRTG 1 cut(s) 969
SmlI CTYRAG 3 cut(s) 502, 695, 1406
SmoI CTYRAG 3 cut(s) 502, 695, 1406
SphI GCATGC 1 cut(s) 926
Sse9I AATT 8 cut(s) 439, 756, 930, 993, 1351, 1391, 1549, 1603
SseBI AGGCCT 2 cut(s) 283, 910
SsiI CCGC 3 cut(s) 190, 246, 1616
SspI AATATT 1 cut(s) 1574
SspMI CTAG 5 cut(s) 279, 510, 536, 1356, 1764
StuI AGGCCT 2 cut(s) 283, 910
StyD4I CCNGG 5 cut(s) 132, 396, 443, 514, 985
StyI CCWWGG 2 cut(s) 174, 610
TaaI ACNGT 1 cut(s) 1162
TaiI ACGT 1 cut(s) 1614
TaqI TCGA 4 cut(s) 403, 720, 1331, 1757
TasI AATT 8 cut(s) 439, 756, 930, 993, 1351, 1391, 1549, 1603
TatI WGTACW 1 cut(s) 468
TfiI GAWTC 4 cut(s) 366, 374, 622, 1359
Tru1I TTAA 8 cut(s) 503, 549, 950, 1022, 1149, 1478, 1529, 1728
Tru9I TTAA 8 cut(s) 503, 549, 950, 1022, 1149, 1478, 1529, 1728
TscAI CASTG 2 cut(s) 213, 1165
TseFI GTSAC 2 cut(s) 557, 1162
TseI GCWGC 7 cut(s) 248, 290, 594, 724, 919, 1375, 1429
Tsp45I GTSAC 2 cut(s) 557, 1162
TspDTI ATGAA 3 cut(s) 343, 1316, 1583
TspRI CASTG 2 cut(s) 213, 1165
Vha464I CTTAAG 1 cut(s) 502
VpaK11BI GGWCC 3 cut(s) 961, 989, 1662
XagI CCTNNNNNAGG 1 cut(s) 513
XapI RAATTY 1 cut(s) 1391
XbaI TCTAGA 2 cut(s) 535, 1355
XceI RCATGY 1 cut(s) 926
XcmI CCANNNNNNNNNTGG 1 cut(s) 312
XmiI GTMKAC 3 cut(s) 54, 520, 892
XspI CTAG 5 cut(s) 279, 510, 536, 1356, 1764
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.