MD17G1114400.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000498
Physical Location & Seq
Forward (+)
9805432 .. 9810065
4634 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1114400.v1.1.491

Sequence Viewer

Length: 1734 bp
ATGATCGTTTTGGAACGCTGCTTGGAGATTACATTGTTGCAATCTGAGATGGATTTTTCTGAGTCCACAAAAGTTGTGTACAATAGGATCCAGAAGATAGAGCCTGAAAATGTGTCCAAGATTATCGGTTATCTTCTGTTGCAAGACCATGGCGAGCGTGACATGATCCGACTAGCTTTCAGCCCTGATAATTTGATCCAGTCTCTGATTAACAAAGCGAAAGCTGAGCTCGGGTTATGCAAACTGGCAGTGTCTCCTTCAATCTCACCTCAGATGAACCAAGGTCCTGTTTCCGACCTGCCTTTACAATTCACCCCATACAGTCCACGACCGGTTTCATCTCCCGTGACCATTGGGGCAGCAAATCCATATAGGGAACTGTCTGATGATCAGCAACCACTGCAAGCCGTAGAGTTTGCTTCATCAGGGTACTCAGATTCAGTGATTGAAAATTATCAACTCCAAAATCGAATGCAGTTTCTGCCTGAGTTTTCAAGCAATTACTGTTATCATGAACCTGCATTGAGTATGAGAACCACTCGAAGGTCTCCAAGCTTGCCTGAATTTCCTGTTAAGGTTTGCCATTACTTCAATAAGGGGTTCTGTAAGCATGGAAGCAACTGCCGGTACTTCCATGGGCATCCCATGCCAGAAAGCTTTTCTCAGTTTTTCAGCCAAAACTCGAATGAGCTTTCAAATGATGATCACGTTGTCTCCCCTGGCTCCCTTGAAAAGCTAAAGATGGAAATAATTGAGCTTTTGAAATCTAGGAGAGGGTTCCCGATATCAATTGCCTCTTTGCCGATGACGTACTATGAGAAATATGGGAGGACTCTTCAAGCTGAGGGATACCTCACAGAGAGCCAGAGACATGGTAAAGCTGGCTACAGCCTGACCAAGCTTCTTGCTCGATTGAAGAACAGCATTCGCCTTATTGACAGGCCTCACGGACAGCACTCAGTTATATTGGCAGAAGATATCCCAAAATATTTAGAGTATACTGGTGAGAAAACTGAACCTGGTGGCAGTGTTGCTGGTTCTCGACAGATATATCTTACCTTTCCAGCCGAGAGTAATTTCACGGAGCAAGATGTTTCCAACTACTTCAACAAATATGGGCTAGTTCAAGATGTACGCATCCCATGTCAACAAAAGAGGATGTTTGGTTTTGTCACCTTTGTTTATGCAGAGACGGTGAGGCAGATTTTGTCAAAAGGGAATCCTCATTTTGTATGCGGGGCTCGTGTGCTAGTGAAACCTTACAGGGAAAAGTCTAGGCTTGTTGACTGGAAGCATTCGGATACGATGCAGCATTCCATGTGCTACCATTCACATTTAATGGATGGAGATTCGGAGCTTCAAGCAATGCCCAGAGTTTGCGATAGCGCAAGATTTCTAAGGAAGCAGTTCATAGAGGAAAATGAGCAAGCACTCGAACTTGAGAGAAGGCGTCTCTCGGAGATGAATTTAGCAGTTAAGCCGTTGTCCCATCATTTCTATCATGGCTACTCGATAGATGACTTCAAGCATCCAGAAGCCCATGTAGAGCAAGCTGAGTTCCCATCCACCGAGGAATTTGACTATTTTCTGGATGTTTTGAATAATGGTTCCACCAGTGATGACAAAATCAGTCACATTAACACTAATTACAATGATCAAGATAGTCAAGGAATTAACCTTCCAGAGAGCCCATTCGCGACTCAAATGGCGAGTGGCATATCAACAGTTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST-HTH RRM_1 zf-CCCH

Protein Analysis

578

Amino Acids

65.85

Weight (kDa)

6.04

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PABC_AtC3H46 PF23182 17 - 80 2.6e-34 AtC3H46 PABC domain
RRM_1 PF00076 359 - 408 4.7e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05160 AT2G05160 AT2G05160
fragaria_vesca FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_3g24070 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900 FvH4_6g40900
malus_domestica MD03G1188600.v1.1 MD09G1123600.v1.1 MD17G1114400.v1.1
prunus_persica Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.3G200500_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1 Prupe.4G234600_v2.0.a1
pyrus_communis pycom03g14150 pycom09g04760 pycom17g10570
rosa_chinensis RchiOBHm_Chr2g0156481 RchiOBHm_Chr5g0042651
rosa_laevigata RLG00000020916 RLG00000034148
rosa_multiflora Rmu_sc0004355.1_g000004 Rmu_sc0005392.1_g000010
rosa_roxburghii Rroxscaffold_1G00037990 Rroxscaffold_2G00093000
rosa_rugosa Rorug02G0453300 Rorug02G0453400 Rorug02G0453500 Rorug02G0453600 Rorug05G0203500 Rorug05G0203500 Rorug05G0203600.1 Rorug05G0203700
rosa_samantha Rh2AG519700 Rh2BG532000 Rh2CG504700 Rh2DG541000 Rh5AG288800 Rh5BG292900 Rh5CG325300 Rh5DG302800
rosa_wichuraiana Rw2G042840 Rw5G026790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 306, 526
AccI GTMKAC 1 cut(s) 998
AccII CGCG 1 cut(s) 1697
AciI CCGC 1 cut(s) 1236
AclWI GGATC 4 cut(s) 82, 95, 160, 190
AcsI RAATTY 3 cut(s) 563, 1465, 1574
AcyI GRCGYC 1 cut(s) 1450
AfaI GTAC 5 cut(s) 80, 431, 629, 812, 1134
AfiI CCNNNNNNNGG 1 cut(s) 543
AgeI ACCGGT 1 cut(s) 331
AjnI CCWGG 2 cut(s) 718, 1018
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 7 cut(s) 207, 258, 552, 718, 862, 1184, 1457
AlwI GGATC 4 cut(s) 82, 95, 160, 190
AlwNI CAGNNNCTG 2 cut(s) 205, 481
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 1 cut(s) 941
ApeKI GCWGC 3 cut(s) 18, 359, 1309
ApoI RAATTY 3 cut(s) 563, 1465, 1574
AsiGI ACCGGT 1 cut(s) 331
Asp700I GAANNNNTTC 1 cut(s) 1406
AspLEI GCGC 1 cut(s) 1388
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 5 cut(s) 258, 304, 1016, 1165, 1207
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 284
BamHI GGATCC 1 cut(s) 87
BanII GRGCYC 3 cut(s) 231, 1243, 1691
BauI CACGAG 1 cut(s) 1242
Bbv12I GWGCWC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 843
BbvI GCAGC 3 cut(s) 5, 371, 1321
BccI CCATC 5 cut(s) 43, 736, 1337, 1497, 1570
BceAI ACGGC 2 cut(s) 392, 1465
BciT130I CCWGG 2 cut(s) 720, 1020
BciVI GTATCC 2 cut(s) 842, 1294
BclI TGATCA 3 cut(s) 388, 703, 1654
BcoDI GTCTC 7 cut(s) 207, 258, 552, 718, 862, 1184, 1457
BfaI CTAG 5 cut(s) 173, 768, 1121, 1250, 1275
BfmI CTRYAG 1 cut(s) 886
BfuAI ACCTGC 2 cut(s) 306, 526
BfuI GTATCC 2 cut(s) 842, 1294
BisI GCNGC 3 cut(s) 19, 360, 1310
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 3 cut(s) 20, 361, 1311
Bme1390I CCNGG 2 cut(s) 720, 1020
Bme18I GGWCC 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 4 cut(s) 89, 724, 779, 1609
BmrFI CCNGG 2 cut(s) 720, 1020
BmsI GCATC 4 cut(s) 649, 1146, 1296, 1537
BplI GAGNNNNNCTC 2 cut(s) 523, 555
Bpu10I CCTNAGC 1 cut(s) 843
Bpu1102I GCTNAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 1460
BsaHI GRCGYC 1 cut(s) 1450
BsaI GGTCTC 1 cut(s) 552
BsaJI CCNNGG 5 cut(s) 148, 280, 634, 718, 1569
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 698, 728
Bsc4I CCNNNNNNNGG 1 cut(s) 543
Bse118I RCCGGY 2 cut(s) 331, 624
Bse1I ACTGG 5 cut(s) 199, 249, 1006, 1292, 1614
Bse3DI GCAATG 1 cut(s) 1371
BseBI CCWGG 2 cut(s) 720, 1020
BseDI CCNNGG 5 cut(s) 148, 280, 634, 718, 1569
BseGI GGATG 7 cut(s) 640, 1137, 1164, 1348, 1528, 1562, 1597
BseLI CCNNNNNNNGG 1 cut(s) 543
BseMI GCAATG 1 cut(s) 1371
BseNI ACTGG 5 cut(s) 199, 249, 1006, 1292, 1614
BseXI GCAGC 3 cut(s) 5, 371, 1321
Bsh1236I CGCG 1 cut(s) 1697
Bsh1285I CGRYCG 1 cut(s) 332
BshFI GGCC 1 cut(s) 943
BshTI ACCGGT 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 2 cut(s) 332, 625
BslFI GGGAC 1 cut(s) 1471
BslI CCNNNNNNNGG 1 cut(s) 543
BsmAI GTCTC 7 cut(s) 207, 258, 552, 718, 862, 1184, 1457
BsmBI CGTCTC 2 cut(s) 1184, 1457
BsmFI GGGAC 1 cut(s) 1471
BsmI GAATGC 4 cut(s) 477, 924, 1294, 1312
BsnI GGCC 1 cut(s) 943
Bso31I GGTCTC 1 cut(s) 552
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 3 cut(s) 231, 1243, 1691
Bsp1407I TGTACA 1 cut(s) 78
Bsp143I GATC 7 cut(s) 3, 87, 165, 195, 388, 703, 1654
Bsp1720I GCTNAGC 1 cut(s) 225
Bsp19I CCATGG 2 cut(s) 148, 634
Bsp68I TCGCGA 1 cut(s) 1697
BspACI CCGC 1 cut(s) 1236
BspANI GGCC 1 cut(s) 943
BspFNI CGCG 1 cut(s) 1697
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 4 cut(s) 89, 724, 779, 1609
BspMI ACCTGC 2 cut(s) 306, 526
BspPI GGATC 4 cut(s) 82, 95, 160, 190
BspTNI GGTCTC 1 cut(s) 552
BsrDI GCAATG 1 cut(s) 1371
BsrFI RCCGGY 2 cut(s) 331, 624
BsrGI TGTACA 1 cut(s) 78
BsrI ACTGG 5 cut(s) 199, 249, 1006, 1292, 1614
BssAI RCCGGY 2 cut(s) 331, 624
BssECI CCNNGG 5 cut(s) 148, 280, 634, 718, 1569
BssMI GATC 7 cut(s) 3, 87, 165, 195, 388, 703, 1654
BssNAI GTATAC 1 cut(s) 999
BssNI GRCGYC 1 cut(s) 1450
BssSI CACGAG 1 cut(s) 1242
BssT1I CCWWGG 3 cut(s) 148, 280, 634
Bst1107I GTATAC 1 cut(s) 999
Bst2BI CACGAG 1 cut(s) 1242
Bst2UI CCWGG 2 cut(s) 720, 1020
Bst4CI ACNGT 5 cut(s) 323, 381, 506, 1195, 1726
Bst6I CTCTTC 1 cut(s) 840
BstACI GRCGYC 1 cut(s) 1450
BstAPI GCANNNNNTGC 3 cut(s) 400, 481, 646
BstAUI TGTACA 1 cut(s) 78
BstC8I GCNNGC 6 cut(s) 155, 405, 557, 883, 1428, 1551
BstDSI CCRYGG 2 cut(s) 148, 634
BstF5I GGATG 7 cut(s) 640, 1137, 1164, 1348, 1528, 1562, 1597
BstFNI CGCG 1 cut(s) 1697
BstHHI GCGC 1 cut(s) 1388
BstKTI GATC 7 cut(s) 6, 90, 168, 198, 391, 706, 1657
BstMAI GTCTC 7 cut(s) 207, 258, 552, 718, 862, 1184, 1457
BstMBI GATC 7 cut(s) 3, 87, 165, 195, 388, 703, 1654
BstMCI CGRYCG 1 cut(s) 332
BstMWI GCNNNNNNNGC 3 cut(s) 400, 481, 646
BstNI CCWGG 2 cut(s) 720, 1020
BstSCI CCNGG 2 cut(s) 718, 1018
BstSFI CTRYAG 1 cut(s) 886
BstUI CGCG 1 cut(s) 1697
BstV1I GCAGC 3 cut(s) 5, 371, 1321
BstX2I RGATCY 1 cut(s) 87
BstXI CCANNNNNNTGG 1 cut(s) 872
BstYI RGATCY 1 cut(s) 87
BstZ17I GTATAC 1 cut(s) 999
BsuI GTATCC 2 cut(s) 842, 1294
BsuRI GGCC 1 cut(s) 943
BtgI CCRYGG 2 cut(s) 148, 634
BtsCI GGATG 7 cut(s) 640, 1137, 1164, 1348, 1528, 1562, 1597
BtsI GCAGTG 3 cut(s) 255, 398, 1033
BtsIMutI CAGTG 5 cut(s) 255, 398, 447, 1033, 1621
BtuMI TCGCGA 1 cut(s) 1697
BveI ACCTGC 2 cut(s) 306, 526
Cac8I GCNNGC 6 cut(s) 155, 405, 557, 883, 1428, 1551
CaiI CAGNNNCTG 2 cut(s) 205, 481
CciI TCATGA 1 cut(s) 511
CfoI GCGC 1 cut(s) 1388
Cfr10I RCCGGY 2 cut(s) 331, 624
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 1439
CsiI ACCWGGT 1 cut(s) 1018
Csp6I GTAC 5 cut(s) 79, 430, 628, 811, 1133
CspAI ACCGGT 1 cut(s) 331
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviQI GTAC 5 cut(s) 79, 430, 628, 811, 1133
DpnI GATC 7 cut(s) 5, 89, 167, 197, 390, 705, 1656
DpnII GATC 7 cut(s) 3, 87, 165, 195, 388, 703, 1654
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 3 cut(s) 148, 280, 634
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 3 cut(s) 231, 1243, 1691
Eco31I GGTCTC 1 cut(s) 552
Eco32I GATATC 2 cut(s) 786, 979
Eco47I GGWCC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 718, 1018
EcoRV GATATC 2 cut(s) 786, 979
EcoT14I CCWWGG 3 cut(s) 148, 280, 634
EcoT38I GRGCYC 3 cut(s) 231, 1243, 1691
ErhI CCWWGG 3 cut(s) 148, 280, 634
Esp3I CGTCTC 2 cut(s) 1184, 1457
FaqI GGGAC 1 cut(s) 1471
FauI CCCGC 1 cut(s) 1229
FbaI TGATCA 3 cut(s) 388, 703, 1654
FblI GTMKAC 1 cut(s) 998
Fnu4HI GCNGC 3 cut(s) 19, 360, 1310
FokI GGATG 7 cut(s) 627, 1124, 1171, 1355, 1515, 1549, 1604
FriOI GRGCYC 3 cut(s) 231, 1243, 1691
Fsp4HI GCNGC 3 cut(s) 19, 360, 1310
FspBI CTAG 5 cut(s) 173, 768, 1121, 1250, 1275
GlaI GCGC 1 cut(s) 1387
GluI GCNGC 3 cut(s) 19, 360, 1310
HaeIII GGCC 1 cut(s) 943
HapII CCGG 2 cut(s) 332, 625
HgaI GACGC 1 cut(s) 1439
HhaI GCGC 1 cut(s) 1388
Hin1I GRCGYC 1 cut(s) 1450
Hin6I GCGC 1 cut(s) 1386
HinP1I GCGC 1 cut(s) 1386
HincII GTYRAC 2 cut(s) 1148, 1285
HindII GTYRAC 2 cut(s) 1148, 1285
HindIII AAGCTT 3 cut(s) 553, 655, 899
HinfI GANTC 6 cut(s) 62, 437, 832, 1219, 1349, 1699
HpaII CCGG 2 cut(s) 332, 625
HphI GGTGA 5 cut(s) 258, 304, 1016, 1165, 1207
Hpy166II GTNNAC 6 cut(s) 66, 79, 326, 999, 1148, 1285
Hpy8I GTNNAC 6 cut(s) 66, 79, 326, 999, 1148, 1285
HpyAV CCTTC 4 cut(s) 267, 537, 1440, 1688
HpyCH4III ACNGT 5 cut(s) 323, 381, 506, 1195, 1726
HpyCH4IV ACGT 2 cut(s) 708, 809
HpyCH4V TGCA 8 cut(s) 40, 142, 240, 403, 475, 521, 1187, 1309
HpyF10VI GCNNNNNNNGC 3 cut(s) 400, 481, 646
HpySE526I ACGT 2 cut(s) 708, 809
Hsp92I GRCGYC 1 cut(s) 1450
HspAI GCGC 1 cut(s) 1386
Ksp22I TGATCA 3 cut(s) 388, 703, 1654
Kzo9I GATC 7 cut(s) 3, 87, 165, 195, 388, 703, 1654
LmnI GCTCC 3 cut(s) 728, 1084, 1354
Lsp1109I GCAGC 3 cut(s) 5, 371, 1321
LweI GCATC 4 cut(s) 649, 1146, 1296, 1537
MabI ACCWGGT 1 cut(s) 1018
MaeI CTAG 5 cut(s) 173, 768, 1121, 1250, 1275
MaeII ACGT 2 cut(s) 708, 809
MaeIII GTNAC 5 cut(s) 158, 346, 1171, 1631, 1726
MalI GATC 7 cut(s) 5, 89, 167, 197, 390, 705, 1656
MboI GATC 7 cut(s) 3, 87, 165, 195, 388, 703, 1654
MboII GAAGA 5 cut(s) 106, 125, 827, 928, 986
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 3 cut(s) 231, 1243, 1691
MlyI GAGTC 3 cut(s) 71, 826, 1693
MmeI TCCRAC 3 cut(s) 193, 318, 1122
MroXI GAANNNNTTC 1 cut(s) 1406
MseI TTAA 6 cut(s) 210, 573, 1337, 1476, 1638, 1674
MspI CCGG 2 cut(s) 332, 625
MspR9I CCNGG 2 cut(s) 720, 1020
MunI CAATTG 1 cut(s) 789
Mva1269I GAATGC 4 cut(s) 477, 924, 1294, 1312
MvaI CCWGG 2 cut(s) 720, 1020
MvnI CGCG 1 cut(s) 1697
MwoI GCNNNNNNNGC 3 cut(s) 400, 481, 646
NcoI CCATGG 2 cut(s) 148, 634
NdeII GATC 7 cut(s) 3, 87, 165, 195, 388, 703, 1654
NlaIV GGNNCC 4 cut(s) 89, 724, 779, 1609
NmeAIII GCCGAG 1 cut(s) 1093
NmuCI GTSAC 4 cut(s) 158, 346, 1171, 1631
NruI TCGCGA 1 cut(s) 1697
PagI TCATGA 1 cut(s) 511
PceI AGGCCT 1 cut(s) 943
PctI GAATGC 4 cut(s) 477, 924, 1294, 1312
PdmI GAANNNNTTC 1 cut(s) 1406
PfeI GAWTC 3 cut(s) 437, 1219, 1349
PinAI ACCGGT 1 cut(s) 331
PkrI GCNGC 3 cut(s) 20, 361, 1311
PleI GAGTC 3 cut(s) 70, 826, 1693
PpsI GAGTC 3 cut(s) 70, 826, 1693
PpuMI RGGWCCY 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 284
Psp6I CCWGG 2 cut(s) 718, 1018
PspGI CCWGG 2 cut(s) 718, 1018
PspN4I GGNNCC 4 cut(s) 89, 724, 779, 1609
PspPI GGNCC 1 cut(s) 284
PspPPI RGGWCCY 1 cut(s) 284
PstNI CAGNNNCTG 2 cut(s) 205, 481
PsuI RGATCY 1 cut(s) 87
RruI TCGCGA 1 cut(s) 1697
RsaI GTAC 5 cut(s) 80, 431, 629, 812, 1134
RsaNI GTAC 5 cut(s) 79, 430, 628, 811, 1133
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 6 cut(s) 210, 573, 1337, 1476, 1638, 1674
SatI GCNGC 3 cut(s) 19, 360, 1310
Sau3AI GATC 7 cut(s) 3, 87, 165, 195, 388, 703, 1654
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 3 cut(s) 71, 826, 1693
ScrFI CCNGG 2 cut(s) 720, 1020
SduI GDGCHC 3 cut(s) 231, 1243, 1691
SexAI ACCWGGT 1 cut(s) 1018
SfaNI GCATC 4 cut(s) 649, 1146, 1296, 1537
SfcI CTRYAG 1 cut(s) 886
SinI GGWCC 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 1439
SmoI CTYRAG 1 cut(s) 1439
SseBI AGGCCT 1 cut(s) 943
SsiI CCGC 1 cut(s) 1236
SspI AATATT 1 cut(s) 989
SspMI CTAG 5 cut(s) 173, 768, 1121, 1250, 1275
SstI GAGCTC 1 cut(s) 231
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 2 cut(s) 718, 1018
StyI CCWWGG 3 cut(s) 148, 280, 634
TaaI ACNGT 5 cut(s) 323, 381, 506, 1195, 1726
TaiI ACGT 2 cut(s) 711, 812
TaqI TCGA 7 cut(s) 469, 541, 683, 910, 1042, 1434, 1511
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 3 cut(s) 437, 1219, 1349
Tru1I TTAA 6 cut(s) 210, 573, 1337, 1476, 1638, 1674
Tru9I TTAA 6 cut(s) 210, 573, 1337, 1476, 1638, 1674
TscAI CASTG 5 cut(s) 255, 405, 447, 1033, 1621
TseFI GTSAC 4 cut(s) 158, 346, 1171, 1631
TseI GCWGC 3 cut(s) 18, 359, 1309
Tsp45I GTSAC 4 cut(s) 158, 346, 1171, 1631
TspDTI ATGAA 6 cut(s) 290, 327, 411, 528, 1399, 1478
TspGWI ACGGA 2 cut(s) 963, 1097
TspRI CASTG 5 cut(s) 255, 405, 447, 1033, 1621
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 3 cut(s) 563, 1465, 1574
XmiI GTMKAC 1 cut(s) 998
XmnI GAANNNNTTC 1 cut(s) 1406
XspI CTAG 5 cut(s) 173, 768, 1121, 1250, 1275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.