Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004150

Physical Location & Seq

Genomic Coordinates Forward (+)

17093532 .. 17097781

Gene Structure 4250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24060.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGTACCCTTCTCTCTCTGCCCCTCTCACCCCTCCTCTTCTCCCCAACTCTATCTCTCCCACTTCACCGTCACTACTCTCTCCGACCTCTCTGGCCGTAAACGACGAGCAGGTTCCTGCCGTTTTGTGGTGCTCTCCACCCACTCCAACCCCAAAATCCTCAAGTCCAACCGGAGGTCCCGCTACGGCCAGCCTCTCTCCCCCTACGACGACCAAGATGAGGCCTATCATTTTGCTGACGTGTCCGATGATGACTGGCTCCTCAATGATGACTTTGCGGAGGTTTCAGATTTTGTTGCTAATAGGAAGAAGTCCAAACCGCACAATGGTTTCGCCAATGGCCATTTGAATGGCGAAAATGCAAAGGGTGTTGCTGAGAAGAGTTTCGTAAGAAACTATGATCATGATTCAAAGAAAGCAAGGGAAACCGCCTTGGATGTAGCTCGCAAGGGAAAGCGCTCTACAAGGAAGAATATGGAGGATAGATTCCCTCGCCTATCGGAGGAAATTGATATGGATGAGAAGTGGTTGCCCCTTATTGATTATCTAAGCACATTTGGGTTTAAGGAATCACACTTTATTCAAATGTATGAGAGGCACATGCCTTCTCTCCAAATAAATGTGTGCTCCGCTCAAGAAAGGTTGGAATATTTGCTGAGTGTTGGTGTCAAGCAGAGAGACATAAGAAGAATGGTTTTGAGACAGCCACAAATTCTCGAATATACAGTTGAGAATAATTTGAAGTCGCATGTTGCTTTCCTGATGAACTTGGGTATTCCAAGTTCCAGAATCGGGCGGATTATTGCTGCTACTCCTTCTCTCTTTTCTTATAGTGTTGAGAATTCTTTGAAACCGACTGTAAGATACTTGGTTGAAGAGGTAGGGATTAAGGAAAAAGATCTAGGCAAAGTGGTGCAGTTAAGCCCTCAAATTCTGGTCCAGCGAATTGATATATCATGGAATGCTCGCTGTACTTTTCTTTCAAATGAGATAGGAGCACCCAGAGAAAGTATTGTGAAGATGGTTAAGAAACATCCTCAGTTCCTTCATTATAGCATTGATGATGGACTGCTGCCTAGGATTAATTTTCTTAGGAGCATTGGGATGTGTAATTCTGACATCTTGAAAGTTTTAACTAGTCTCACTCAGGTACTATCTTTGTCACTAGAGGATAATTTGAAACCCAAGTACATGTACTTGGTCAATGAACTGAATAATGAAGTGCATTCTTTGACCAAATATCCTATGTACCTAAGCTTGTCTTTAGACCAGAGAATTCGCCCTCGACATAGATTCTTGGTCTCCTTGAAGAAAGCTCCTAAGGGACCATTTCCACTGAGTTCATTTGTTCCAACAGATGAATCCTTCTGTCAGCAGTGGGCTGGAACAAGCGTAGATAAATATCTTGCTTTCAGGCAGAGATTACTGCTTAGGGAGTTTGCTGAAAAATATGAAAGAAAGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

489

Amino Acids

56.19

Weight (kDa)

9.36

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	172 - 438	4.7e-46	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55580 AT5G55580 AT5G55580
fragaria_vesca	FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060 FvH4_3g24060
malus_domestica	MD03G1188700.v1.1 MD11G1204700.v1.1
prunus_persica	Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234100_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1 Prupe.4G234400_v2.0.a1
pyrus_communis	pycom03g14160 pycom11g17740
rosa_chinensis	RchiOBHm_Chr5g0042641
rosa_laevigata	RLG00000034147
rosa_multiflora	Rmu_sc0004355.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038000
rosa_rugosa	Rorug05G0203500 Rorug05G0203500
rosa_samantha	Rh5AG288700 Rh5BG292800 Rh5CG325200 Rh5DG302700
rosa_wichuraiana	Rw5G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	101
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	632
AciI	CCGC	6 cut(s)	181, 278, 320, 429, 630, 796
AcoI	YGGCCR	3 cut(s)	94, 187, 340
AcsI	RAATTY	4 cut(s)	711, 841, 930, 1275
AfaI	GTAC	6 cut(s)	6, 973, 1152, 1190, 1196, 1250
AfeI	AGCGCT	1 cut(s)	458
AfiI	CCNNNNNNNGG	6 cut(s)	127, 174, 220, 326, 502, 792
AflIII	ACRYGT	2 cut(s)	240, 1191
AhlI	ACTAGT	1 cut(s)	1136
AjiI	CACGTC	1 cut(s)	241
AluBI	AGCT	3 cut(s)	443, 1257, 1316
AluI	AGCT	3 cut(s)	443, 1257, 1316
Alw21I	GWGCWC	3 cut(s)	135, 629, 1000
Alw26I	GTCTC	4 cut(s)	672, 694, 1145, 1306
Aor51HI	AGCGCT	1 cut(s)	458
AoxI	GGCC	4 cut(s)	94, 187, 222, 340
ApeKI	GCWGC	2 cut(s)	806, 1072
ApoI	RAATTY	4 cut(s)	711, 841, 930, 1275
AseI	ATTAAT	1 cut(s)	1083
Asp700I	GAANNNNTTC	1 cut(s)	383
Asp718I	GGTACC	1 cut(s)	4
AspA2I	CCTAGG	1 cut(s)	1076
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	3 cut(s)	177, 937, 1325
AsuHPI	GGTGA	2 cut(s)	20, 58
AvaII	GGWCC	3 cut(s)	177, 937, 1325
AvrII	CCTAGG	1 cut(s)	1076
AxyI	CCTNAGG	1 cut(s)	1320
BalI	TGGCCA	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	3 cut(s)	135, 629, 1000
BbvI	GCAGC	2 cut(s)	793, 1059
BccI	CCATC	2 cut(s)	1015, 1058
BceAI	ACGGC	3 cut(s)	81, 105, 202
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	4 cut(s)	672, 694, 1145, 1306
BcuI	ACTAGT	1 cut(s)	1136
BfaI	CTAG	4 cut(s)	902, 1077, 1137, 1166
BfoI	RGCGCY	1 cut(s)	460
BfuAI	ACCTGC	1 cut(s)	101
BglII	AGATCT	1 cut(s)	898
BisI	GCNGC	2 cut(s)	807, 1073
BlnI	CCTAGG	1 cut(s)	1076
BlsI	GCNGC	2 cut(s)	808, 1074
Bme18I	GGWCC	3 cut(s)	177, 937, 1325
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	3 cut(s)	177, 937, 1325
BmiI	GGNNCC	5 cut(s)	6, 115, 179, 260, 1326
Bpu10I	CCTNAGC	2 cut(s)	1253, 1430
BpuEI	CTTGAG	2 cut(s)	146, 618
BsaBI	GATNNNNATC	1 cut(s)	1401
BsaI	GGTCTC	1 cut(s)	1306
BsaJI	CCNNGG	2 cut(s)	432, 1076
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	6 cut(s)	127, 174, 220, 326, 502, 792
Bse1I	ACTGG	1 cut(s)	260
Bse21I	CCTNAGG	1 cut(s)	1320
Bse8I	GATNNNNATC	1 cut(s)	1401
BseDI	CCNNGG	2 cut(s)	432, 1076
BseGI	GGATG	4 cut(s)	442, 523, 1033, 1110
BseJI	GATNNNNATC	1 cut(s)	1401
BseLI	CCNNNNNNNGG	6 cut(s)	127, 174, 220, 326, 502, 792
BseMII	CTCAG	5 cut(s)	366, 647, 1052, 1160, 1328
BseNI	ACTGG	1 cut(s)	260
BseRI	GAGGAG	2 cut(s)	25, 251
BseXI	GCAGC	2 cut(s)	793, 1059
BsgI	GTGCAG	1 cut(s)	935
BshFI	GGCC	4 cut(s)	96, 189, 224, 342
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	3 cut(s)	135, 629, 1000
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	2 cut(s)	163, 1338
BslI	CCNNNNNNNGG	6 cut(s)	127, 174, 220, 326, 502, 792
BsmAI	GTCTC	4 cut(s)	672, 694, 1145, 1306
BsmFI	GGGAC	2 cut(s)	163, 1338
BsmI	GAATGC	2 cut(s)	967, 1225
BsnI	GGCC	4 cut(s)	96, 189, 224, 342
Bso31I	GGTCTC	1 cut(s)	1306
Bsp1286I	GDGCHC	3 cut(s)	135, 629, 1000
Bsp143I	GATC	2 cut(s)	400, 898
BspACI	CCGC	6 cut(s)	181, 278, 320, 429, 630, 796
BspANI	GGCC	4 cut(s)	96, 189, 224, 342
BspCNI	CTCAG	5 cut(s)	367, 648, 1051, 1159, 1329
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	5 cut(s)	6, 115, 179, 260, 1326
BspMI	ACCTGC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	1306
BsrBI	CCGCTC	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	432, 1076
BssMI	GATC	2 cut(s)	400, 898
BssT1I	CCWWGG	2 cut(s)	432, 1076
Bst4CI	ACNGT	3 cut(s)	70, 727, 859
Bst6I	CTCTTC	3 cut(s)	43, 374, 870
BstC8I	GCNNGC	3 cut(s)	191, 445, 967
BstENI	CCTNNNNNAGG	1 cut(s)	500
BstF5I	GGATG	4 cut(s)	442, 523, 1033, 1110
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	2 cut(s)	403, 901
BstMAI	GTCTC	4 cut(s)	672, 694, 1145, 1306
BstMBI	GATC	2 cut(s)	400, 898
BstNSI	RCATGY	3 cut(s)	604, 752, 1195
BstV1I	GCAGC	2 cut(s)	793, 1059
BstX2I	RGATCY	1 cut(s)	898
BstXI	CCANNNNNNTGG	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	898
Bsu36I	CCTNAGG	1 cut(s)	1320
BsuRI	GGCC	4 cut(s)	96, 189, 224, 342
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	4 cut(s)	442, 523, 1033, 1110
BtsI	GCAGTG	1 cut(s)	1382
BtsIMutI	CAGTG	2 cut(s)	1334, 1382
BveI	ACCTGC	1 cut(s)	101
Cac8I	GCNNGC	3 cut(s)	191, 445, 967
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	3 cut(s)	177, 937, 1325
Csp6I	GTAC	6 cut(s)	5, 972, 1151, 1189, 1195, 1249
CviAII	CATG	5 cut(s)	404, 601, 749, 957, 1192
CviQI	GTAC	6 cut(s)	5, 972, 1151, 1189, 1195, 1249
DpnI	GATC	2 cut(s)	402, 900
DpnII	GATC	2 cut(s)	400, 898
EaeI	YGGCCR	3 cut(s)	94, 187, 340
Eam1104I	CTCTTC	3 cut(s)	43, 374, 870
EarI	CTCTTC	3 cut(s)	43, 374, 870
EciI	GGCGGA	1 cut(s)	811
Eco130I	CCWWGG	2 cut(s)	432, 1076
Eco147I	AGGCCT	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	1306
Eco47I	GGWCC	3 cut(s)	177, 937, 1325
Eco47III	AGCGCT	1 cut(s)	458
Eco81I	CCTNAGG	1 cut(s)	1320
EcoNI	CCTNNNNNAGG	1 cut(s)	500
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRI	GAATTC	2 cut(s)	841, 1275
EcoT14I	CCWWGG	2 cut(s)	432, 1076
ErhI	CCWWGG	2 cut(s)	432, 1076
FaeI	CATG	5 cut(s)	407, 604, 752, 960, 1195
FalI	AAGNNNNNCTT	2 cut(s)	1246, 1278
FaqI	GGGAC	2 cut(s)	163, 1338
FatI	CATG	5 cut(s)	403, 600, 748, 956, 1191
FauI	CCCGC	1 cut(s)	188
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	807, 1073
FokI	GGATG	4 cut(s)	449, 530, 1020, 1117
Fsp4HI	GCNGC	2 cut(s)	807, 1073
FspBI	CTAG	4 cut(s)	902, 1077, 1137, 1166
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	2 cut(s)	807, 1073
HaeII	RGCGCY	1 cut(s)	460
HaeIII	GGCC	4 cut(s)	96, 189, 224, 342
HapII	CCGG	1 cut(s)	172
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	5 cut(s)	407, 604, 752, 960, 1195
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	1255
HinfI	GANTC	6 cut(s)	407, 486, 569, 789, 1293, 1361
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	2 cut(s)	20, 58
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	5 cut(s)	85, 247, 289, 502, 1117
Hpy188III	TCNNGA	6 cut(s)	404, 635, 716, 760, 786, 1123
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	2 cut(s)	108, 212
HpyAV	CCTTC	5 cut(s)	19, 615, 825, 1055, 1375
HpyCH4III	ACNGT	3 cut(s)	70, 727, 859
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	362, 916, 1225
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	407, 604, 752, 960, 1195
HspAI	GCGC	1 cut(s)	457
KpnI	GGTACC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	400, 898
LmnI	GCTCC	5 cut(s)	264, 632, 995, 1095, 1321
Lsp1109I	GCAGC	2 cut(s)	793, 1059
MaeI	CTAG	4 cut(s)	902, 1077, 1137, 1166
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	70, 1161
MalI	GATC	2 cut(s)	402, 900
MbiI	CCGCTC	1 cut(s)	632
MboI	GATC	2 cut(s)	400, 898
MboII	GAAGA	8 cut(s)	30, 319, 391, 481, 699, 887, 1030, 1321
MflI	RGATCY	1 cut(s)	898
MhlI	GDGCHC	3 cut(s)	135, 629, 1000
MlsI	TGGCCA	1 cut(s)	342
MluNI	TGGCCA	1 cut(s)	342
MmeI	TCCRAC	5 cut(s)	108, 171, 192, 624, 1376
Mox20I	TGGCCA	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	6 cut(s)	564, 888, 920, 1026, 1083, 1133
MslI	CAYNNNNRTG	2 cut(s)	348, 1103
Msp20I	TGGCCA	1 cut(s)	342
MspI	CCGG	1 cut(s)	172
Mva1269I	GAATGC	2 cut(s)	967, 1225
NdeII	GATC	2 cut(s)	400, 898
NlaIII	CATG	5 cut(s)	407, 604, 752, 960, 1195
NlaIV	GGNNCC	5 cut(s)	6, 115, 179, 260, 1326
NmuCI	GTSAC	2 cut(s)	70, 1161
NspI	RCATGY	3 cut(s)	604, 752, 1195
PagI	TCATGA	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	224
PciI	ACATGT	1 cut(s)	1191
PctI	GAATGC	2 cut(s)	967, 1225
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	6 cut(s)	407, 486, 569, 789, 1293, 1361
PkrI	GCNGC	2 cut(s)	808, 1074
PpuMI	RGGWCCY	1 cut(s)	177
PscI	ACATGT	1 cut(s)	1191
PshBI	ATTAAT	1 cut(s)	1083
Psp5II	RGGWCCY	1 cut(s)	177
PspN4I	GGNNCC	5 cut(s)	6, 115, 179, 260, 1326
PspPI	GGNCC	3 cut(s)	177, 937, 1325
PspPPI	RGGWCCY	1 cut(s)	177
PsrI	GAACNNNNNNTAC	2 cut(s)	766, 798
PsuI	RGATCY	1 cut(s)	898
RsaI	GTAC	6 cut(s)	6, 973, 1152, 1190, 1196, 1250
RsaNI	GTAC	6 cut(s)	5, 972, 1151, 1189, 1195, 1249
RseI	CAYNNNNRTG	2 cut(s)	348, 1103
SaqAI	TTAA	6 cut(s)	564, 888, 920, 1026, 1083, 1133
SatI	GCNGC	2 cut(s)	807, 1073
Sau3AI	GATC	2 cut(s)	400, 898
Sau96I	GGNCC	3 cut(s)	177, 937, 1325
SduI	GDGCHC	3 cut(s)	135, 629, 1000
SinI	GGWCC	3 cut(s)	177, 937, 1325
SmiMI	CAYNNNNRTG	2 cut(s)	348, 1103
SmlI	CTYRAG	2 cut(s)	161, 633
SmoI	CTYRAG	2 cut(s)	161, 633
SpeI	ACTAGT	1 cut(s)	1136
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	6 cut(s)	181, 278, 320, 429, 630, 796
SspI	AATATT	1 cut(s)	650
SspMI	CTAG	4 cut(s)	902, 1077, 1137, 1166
StuI	AGGCCT	1 cut(s)	224
StyI	CCWWGG	2 cut(s)	432, 1076
TaaI	ACNGT	3 cut(s)	70, 727, 859
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	717, 1285
TatI	WGTACW	3 cut(s)	971, 1188, 1194
TfiI	GAWTC	6 cut(s)	407, 486, 569, 789, 1293, 1361
Tru1I	TTAA	6 cut(s)	564, 888, 920, 1026, 1083, 1133
Tru9I	TTAA	6 cut(s)	564, 888, 920, 1026, 1083, 1133
TscAI	CASTG	2 cut(s)	1341, 1382
TseFI	GTSAC	2 cut(s)	70, 1161
TseI	GCWGC	2 cut(s)	806, 1072
Tsp45I	GTSAC	2 cut(s)	70, 1161
TspDTI	ATGAA	7 cut(s)	779, 1037, 1221, 1233, 1332, 1374, 1467
TspRI	CASTG	2 cut(s)	1341, 1382
VpaK11BI	GGWCC	3 cut(s)	177, 937, 1325
VspI	ATTAAT	1 cut(s)	1083
XagI	CCTNNNNNAGG	1 cut(s)	500
XapI	RAATTY	4 cut(s)	711, 841, 930, 1275
XceI	RCATGY	3 cut(s)	604, 752, 1195
XmaJI	CCTAGG	1 cut(s)	1076
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	4 cut(s)	902, 1077, 1137, 1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.