AT5G55950

Triose-phosphate Transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010952
Physical Location & Seq
Reverse (-)
22658112 .. 22660505
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55950.3

Sequence Viewer

Length: 1197 bp
ATGGGTCTGGTTGATTCTTTGTTAGGAAAAGATGCAAGAAAATTTCTCAAAAGGAAAGATAGTGATGCTGCAGAAGCAGGACGAGCTTTGGAAGAACTCAGAAGTTCTTTGTACAATGAGCTTAAAACATCAGAAGGAGCTAAAAGGCAACAACAGAGATTTTGTGGCCCTGTTGTTGCAATGTCCTTTAATTTCGTTGTTGCTGTTGGAATCATCCTTGCCAATAAATTAGTGATGGGAAGAGTTGGATTCAATTTCCCAATCTTTCTAACATTGATTCATTATACCGTGGCTTGGATTCTTTTAGCTTTCTTCAAGTCTCTCTCTTTGCTTCCAATGTCTCCTCCATCAAAGACAACACCTTTCTCATCTCTTTTCTCTCTTGGAGCTGTCATGGCCTTTGCTTCTGGACTCGCTAATACCAGTCTCAAACACAATAGCGTTGGATTCTATCAAATGGCTAAGATCGCAGTTACACCAACGATTGTTCTTGCCGAGTTTGTTCTCTTCAAGAAAACCATTTCTTCCACAAAGGTCATGGCATTAGCTGTAGTATCTCTAGGTGTGGCAATCGCGACAGTGACGGATCTAGAATTTAATTTGTTTGGTGCATTAGTTGCTGTTGCTTGGATTATTCCAAGTGCCATTAACAAAATACTCTGGTCTAATCTTCAGCAACAAGCTAATTGGACTGCCCTAGCATTGATGTGGAAGACAACACCGTTTACTGTCTTCTTCTTGTTGGCTCTCATGCCATGGCTTGACCCACCTGGAGTTTTGCTTTTCAAATGGGATTTAACTAACTCTTCCGCAATCCTCATCTCGGCTCTTCTCGGCTTTCTTCTCCAATGGTCTGGTGCACTCGCTCTCGGGGCAACATCAGCAACATCTCATGTAGTATTAGGGCAATTCAAGACATGTGTGATCTTGCTTGGAGGTTACGTTATCTTCGGCTCTGACCCTGGTTTCATCAGCATCTGCGGCGCTATCGCAGCTCTTGGAGGCATGTCTGTCTACACGTGGCTCAATCTTCCGGGGAAATCCATCGATCACATGTCAAACAAGCAGCTGCCAAAGCAAAACGTCACCGTTTCAAAACCTAAAGCCGAGGCTGACGACGGAGGAGGAGAGACCGGAGTAACCGTAGTTTCTGTTGACCCACTTCTCTCCAAGACGATAACTGCAAATATCGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

398

Amino Acids

42.64

Weight (kDa)

9.48

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 6 - 261 5e-13 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55950 AT5G55950 AT5G55950 AT5G55950
fragaria_vesca FvH4_3g42500 FvH4_3g42500
malus_domestica MD11G1035900.v1.1
prunus_persica Prupe.6G026800_v2.0.a1 Prupe.6G026800_v2.0.a1
pyrus_communis pycom11g02970
rosa_chinensis RchiOBHm_Chr5g0076161
rosa_laevigata RLG00000036606
rosa_multiflora Rmu_ssc0000123.1_g000002
rosa_roxburghii Rroxscaffold_1G00005650
rosa_rugosa Rorug05G0445200
rosa_samantha Rh5AG501300 Rh5BG522800 Rh5CG546600 Rh5DG535200
rosa_wichuraiana Rw5G046530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1014
AccII CGCG 1 cut(s) 575
AciI CCGC 2 cut(s) 810, 981
AclWI GGATC 1 cut(s) 594
AcsI RAATTY 2 cut(s) 41, 593
AcuI CTGAAG 1 cut(s) 656
AcvI CACGTG 1 cut(s) 1020
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 294, 823
AflIII ACRYGT 3 cut(s) 917, 1017, 1053
AgsI TTSAA 6 cut(s) 253, 316, 511, 787, 913, 1095
AjnI CCWGG 2 cut(s) 769, 961
AluBI AGCT 9 cut(s) 86, 121, 140, 308, 389, 548, 683, 995, 1069
AluI AGCT 9 cut(s) 86, 121, 140, 308, 389, 548, 683, 995, 1069
Alw21I GWGCWC 1 cut(s) 862
Alw26I GTCTC 4 cut(s) 324, 345, 431, 1124
Alw44I GTGCAC 1 cut(s) 858
AlwI GGATC 1 cut(s) 594
AlwNI CAGNNNCTG 1 cut(s) 978
Ama87I CYCGRG 1 cut(s) 869
AoxI GGCC 2 cut(s) 166, 396
ApaLI GTGCAC 1 cut(s) 858
ApeKI GCWGC 4 cut(s) 68, 992, 1066, 1069
ApoI RAATTY 2 cut(s) 41, 593
AspLEI GCGC 1 cut(s) 986
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 1035
AsuHPI GGTGA 1 cut(s) 1078
AvaI CYCGRG 1 cut(s) 869
BaeGI GKGCMC 1 cut(s) 862
BbrPI CACGTG 1 cut(s) 1020
BbsI GAAGAC 2 cut(s) 719, 724
Bbv12I GWGCWC 1 cut(s) 862
BbvI GCAGC 4 cut(s) 55, 1004, 1056, 1078
BccI CCATC 3 cut(s) 229, 355, 1052
BciT130I CCWGG 2 cut(s) 771, 963
BcnI CCSGG 1 cut(s) 1035
BcoDI GTCTC 4 cut(s) 324, 345, 431, 1124
BfaI CTAG 3 cut(s) 560, 590, 698
BfmI CTRYAG 2 cut(s) 69, 549
BfoI RGCGCY 1 cut(s) 987
BisI GCNGC 5 cut(s) 69, 982, 993, 1067, 1070
BlsI GCNGC 5 cut(s) 70, 983, 994, 1068, 1071
Bme1390I CCNGG 3 cut(s) 771, 963, 1035
BmeT110I CYCGRG 1 cut(s) 869
BmgT120I GGNCC 1 cut(s) 167
BmrFI CCNGG 3 cut(s) 771, 963, 1035
BmsI GCATC 3 cut(s) 22, 55, 984
BpiI GAAGAC 2 cut(s) 719, 724
BpmI CTGGAG 1 cut(s) 792
BpuMI CCSGG 1 cut(s) 1035
Bsa29I ATCGAT 1 cut(s) 1047
BsaAI YACGTR 1 cut(s) 1020
BsaI GGTCTC 1 cut(s) 1124
BsaJI CCNNGG 5 cut(s) 288, 755, 961, 1034, 1107
BsaWI WCCGGW 1 cut(s) 1133
BsaXI ACNNNNNCTCC 4 cut(s) 927, 957, 1128, 1158
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 823
Bse1I ACTGG 1 cut(s) 423
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 2 cut(s) 771, 963
BseCI ATCGAT 1 cut(s) 1047
BseDI CCNNGG 5 cut(s) 288, 755, 961, 1034, 1107
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 294, 823
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 423
BseRI GAGGAG 3 cut(s) 333, 1137, 1140
BseSI GKGCMC 1 cut(s) 862
BseXI GCAGC 4 cut(s) 55, 1004, 1056, 1078
Bsh1236I CGCG 1 cut(s) 575
BshFI GGCC 2 cut(s) 168, 398
BshVI ATCGAT 1 cut(s) 1047
BsiHKAI GWGCWC 1 cut(s) 862
BsiHKCI CYCGRG 1 cut(s) 869
BsiSI CCGG 2 cut(s) 1034, 1134
BslI CCNNNNNNNGG 2 cut(s) 294, 823
BsmAI GTCTC 4 cut(s) 324, 345, 431, 1124
BsnI GGCC 2 cut(s) 168, 398
Bso31I GGTCTC 1 cut(s) 1124
BsoBI CYCGRG 1 cut(s) 869
Bsp1286I GDGCHC 1 cut(s) 862
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 4 cut(s) 465, 586, 924, 1048
Bsp19I CCATGG 1 cut(s) 755
Bsp68I TCGCGA 1 cut(s) 575
BspACI CCGC 2 cut(s) 810, 981
BspANI GGCC 2 cut(s) 168, 398
BspCNI CTCAG 1 cut(s) 111
BspDI ATCGAT 1 cut(s) 1047
BspFNI CGCG 1 cut(s) 575
BspMAI CTGCAG 1 cut(s) 73
BspPI GGATC 1 cut(s) 594
BspQI GCTCTTC 1 cut(s) 834
BspTNI GGTCTC 1 cut(s) 1124
BsrDI GCAATG 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 5 cut(s) 288, 755, 961, 1034, 1107
BssMI GATC 4 cut(s) 465, 586, 924, 1048
BssT1I CCWWGG 1 cut(s) 755
Bst2UI CCWGG 2 cut(s) 771, 963
Bst4CI ACNGT 6 cut(s) 289, 580, 723, 730, 1090, 1144
Bst6I CTCTTC 4 cut(s) 235, 512, 811, 834
BstAPI GCANNNNNTGC 1 cut(s) 617
BstAUI TGTACA 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 1020
BstDEI CTNAG 2 cut(s) 98, 462
BstDSI CCRYGG 2 cut(s) 288, 755
BstF5I GGATG 1 cut(s) 213
BstFNI CGCG 1 cut(s) 575
BstH2I RGCGCY 1 cut(s) 987
BstHHI GCGC 1 cut(s) 986
BstKTI GATC 4 cut(s) 468, 589, 927, 1051
BstMAI GTCTC 4 cut(s) 324, 345, 431, 1124
BstMBI GATC 4 cut(s) 465, 586, 924, 1048
BstNI CCWGG 2 cut(s) 771, 963
BstNSI RCATGY 3 cut(s) 921, 1009, 1057
BstSCI CCNGG 3 cut(s) 769, 961, 1033
BstSFI CTRYAG 2 cut(s) 69, 549
BstSLI GKGCMC 1 cut(s) 862
BstUI CGCG 1 cut(s) 575
BstV1I GCAGC 4 cut(s) 55, 1004, 1056, 1078
BstV2I GAAGAC 2 cut(s) 719, 724
BstX2I RGATCY 1 cut(s) 586
BstXI CCANNNNNNTGG 1 cut(s) 854
BstYI RGATCY 1 cut(s) 586
Bsu15I ATCGAT 1 cut(s) 1047
BsuRI GGCC 2 cut(s) 168, 398
BsuTUI ATCGAT 1 cut(s) 1047
BtgI CCRYGG 2 cut(s) 288, 755
BtsCI GGATG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 585
BtuMI TCGCGA 1 cut(s) 575
CaiI CAGNNNCTG 1 cut(s) 978
CfoI GCGC 1 cut(s) 986
Cfr13I GGNCC 1 cut(s) 167
ClaI ATCGAT 1 cut(s) 1047
Csp6I GTAC 1 cut(s) 112
CviAII CATG 8 cut(s) 394, 538, 751, 756, 893, 918, 1006, 1054
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 98, 462
DpnI GATC 4 cut(s) 467, 588, 926, 1050
DpnII GATC 4 cut(s) 465, 586, 924, 1048
Eam1104I CTCTTC 4 cut(s) 235, 512, 811, 834
EarI CTCTTC 4 cut(s) 235, 512, 811, 834
Eco130I CCWWGG 1 cut(s) 755
Eco31I GGTCTC 1 cut(s) 1124
Eco57I CTGAAG 1 cut(s) 656
Eco72I CACGTG 1 cut(s) 1020
Eco88I CYCGRG 1 cut(s) 869
EcoRII CCWGG 2 cut(s) 769, 961
EcoT14I CCWWGG 1 cut(s) 755
ErhI CCWWGG 1 cut(s) 755
FaeI CATG 8 cut(s) 397, 541, 754, 759, 896, 921, 1009, 1057
FatI CATG 8 cut(s) 393, 537, 750, 755, 892, 917, 1005, 1053
FblI GTMKAC 1 cut(s) 1014
Fnu4HI GCNGC 5 cut(s) 69, 982, 993, 1067, 1070
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 5 cut(s) 69, 982, 993, 1067, 1070
FspBI CTAG 3 cut(s) 560, 590, 698
GlaI GCGC 1 cut(s) 985
GluI GCNGC 5 cut(s) 69, 982, 993, 1067, 1070
GsuI CTGGAG 1 cut(s) 792
HaeII RGCGCY 1 cut(s) 987
HaeIII GGCC 2 cut(s) 168, 398
HapII CCGG 2 cut(s) 1034, 1134
HhaI GCGC 1 cut(s) 986
Hin1II CATG 8 cut(s) 397, 541, 754, 759, 896, 921, 1009, 1057
Hin6I GCGC 1 cut(s) 984
HinP1I GCGC 1 cut(s) 984
HincII GTYRAC 1 cut(s) 1156
HindII GTYRAC 1 cut(s) 1156
HinfI GANTC 7 cut(s) 14, 210, 249, 277, 298, 411, 447
HpaII CCGG 2 cut(s) 1034, 1134
HphI GGTGA 1 cut(s) 1078
Hpy166II GTNNAC 4 cut(s) 726, 860, 1015, 1156
Hpy188I TCNGA 3 cut(s) 101, 133, 958
Hpy188III TCNNGA 5 cut(s) 408, 511, 574, 590, 913
Hpy8I GTNNAC 4 cut(s) 726, 860, 1015, 1156
Hpy99I CGWCG 1 cut(s) 1121
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 6 cut(s) 289, 580, 723, 730, 1090, 1144
HpyCH4IV ACGT 3 cut(s) 942, 1019, 1083
HpyCH4V TGCA 6 cut(s) 35, 71, 179, 611, 860, 1184
HpyF3I CTNAG 2 cut(s) 98, 462
HpySE526I ACGT 3 cut(s) 942, 1019, 1083
Hsp92II CATG 8 cut(s) 397, 541, 754, 759, 896, 921, 1009, 1057
HspAI GCGC 1 cut(s) 984
Kzo9I GATC 4 cut(s) 465, 586, 924, 1048
LguI GCTCTTC 1 cut(s) 834
LmnI GCTCC 2 cut(s) 137, 386
Lsp1109I GCAGC 4 cut(s) 55, 1004, 1056, 1078
LweI GCATC 3 cut(s) 22, 55, 984
MaeI CTAG 3 cut(s) 560, 590, 698
MaeII ACGT 3 cut(s) 942, 1019, 1083
MaeIII GTNAC 5 cut(s) 472, 580, 938, 1084, 1138
MalI GATC 4 cut(s) 467, 588, 926, 1050
MboI GATC 4 cut(s) 465, 586, 924, 1048
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 1 cut(s) 862
MluCI AATT 8 cut(s) 41, 190, 227, 253, 593, 598, 685, 908
MlyI GAGTC 1 cut(s) 405
MmeI TCCRAC 3 cut(s) 187, 226, 424
MnlI CCTC 7 cut(s) 354, 827, 929, 995, 1102, 1115, 1118
MseI TTAA 5 cut(s) 123, 189, 597, 648, 797
MslI CAYNNNNRTG 1 cut(s) 706
MspA1I CMGCKG 1 cut(s) 1069
MspI CCGG 2 cut(s) 1034, 1134
MspR9I CCNGG 3 cut(s) 771, 963, 1035
MvaI CCWGG 2 cut(s) 771, 963
MvnI CGCG 1 cut(s) 575
NciI CCSGG 1 cut(s) 1035
NcoI CCATGG 1 cut(s) 755
NdeII GATC 4 cut(s) 465, 586, 924, 1048
NlaIII CATG 8 cut(s) 397, 541, 754, 759, 896, 921, 1009, 1057
NmeAIII GCCGAG 4 cut(s) 520, 803, 813, 1132
NmuCI GTSAC 2 cut(s) 580, 1084
NruI TCGCGA 1 cut(s) 575
NspI RCATGY 3 cut(s) 921, 1009, 1057
PciI ACATGT 2 cut(s) 917, 1053
PciSI GCTCTTC 1 cut(s) 834
PfeI GAWTC 6 cut(s) 14, 210, 249, 277, 298, 447
PkrI GCNGC 5 cut(s) 70, 983, 994, 1068, 1071
PleI GAGTC 1 cut(s) 405
PmaCI CACGTG 1 cut(s) 1020
PmlI CACGTG 1 cut(s) 1020
PpsI GAGTC 1 cut(s) 405
Ppu21I YACGTR 1 cut(s) 1020
PscI ACATGT 2 cut(s) 917, 1053
Psp6I CCWGG 2 cut(s) 769, 961
PspCI CACGTG 1 cut(s) 1020
PspGI CCWGG 2 cut(s) 769, 961
PspPI GGNCC 1 cut(s) 167
PstI CTGCAG 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 978
PsuI RGATCY 1 cut(s) 586
PvuII CAGCTG 1 cut(s) 1069
RruI TCGCGA 1 cut(s) 575
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 706
SapI GCTCTTC 1 cut(s) 834
SaqAI TTAA 5 cut(s) 123, 189, 597, 648, 797
SatI GCNGC 5 cut(s) 69, 982, 993, 1067, 1070
Sau3AI GATC 4 cut(s) 465, 586, 924, 1048
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 3 cut(s) 771, 963, 1035
SduI GDGCHC 1 cut(s) 862
SfaNI GCATC 3 cut(s) 22, 55, 984
SfcI CTRYAG 2 cut(s) 69, 549
SmiMI CAYNNNNRTG 1 cut(s) 706
Sse9I AATT 8 cut(s) 41, 190, 227, 253, 593, 598, 685, 908
SsiI CCGC 2 cut(s) 810, 981
SspMI CTAG 3 cut(s) 560, 590, 698
StyD4I CCNGG 3 cut(s) 769, 961, 1033
StyI CCWWGG 1 cut(s) 755
TaaI ACNGT 6 cut(s) 289, 580, 723, 730, 1090, 1144
TaiI ACGT 3 cut(s) 945, 1022, 1086
TaqI TCGA 1 cut(s) 1047
TasI AATT 8 cut(s) 41, 190, 227, 253, 593, 598, 685, 908
TatI WGTACW 1 cut(s) 111
TauI GCSGC 1 cut(s) 984
TfiI GAWTC 6 cut(s) 14, 210, 249, 277, 298, 447
Tru1I TTAA 5 cut(s) 123, 189, 597, 648, 797
Tru9I TTAA 5 cut(s) 123, 189, 597, 648, 797
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 2 cut(s) 580, 1084
TseI GCWGC 4 cut(s) 68, 992, 1066, 1069
Tsp45I GTSAC 2 cut(s) 580, 1084
TspDTI ATGAA 2 cut(s) 269, 958
TspGWI ACGGA 2 cut(s) 599, 1134
TspRI CASTG 1 cut(s) 585
VneI GTGCAC 1 cut(s) 858
XapI RAATTY 2 cut(s) 41, 593
XbaI TCTAGA 1 cut(s) 589
XceI RCATGY 3 cut(s) 921, 1009, 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 1014
XspI CTAG 3 cut(s) 560, 590, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.