Prupe.6G026800_v2.0.a1

membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010952
Physical Location & Seq
Reverse (-)
2106907 .. 2110035
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G026800.1

Sequence Viewer

Length: 1164 bp
ATGGGGCTGTTGGATTCATTGGTGGGAAACGAAGTTAAGAAGTTTGTGAAACGAAAAGACAGTGATGCAGGAGAAGCAGGTCGAGCACTGGAAGAACTCAGAGGTTCTATCTACAATGAAATTCGAACGTCAGAAGGCGCCAAGCGCCAACAGCAACGGATTTGTGGGCCAGTGGTGGCTATGACCTTCAATTTCATTGTCTCTGTGGGGATTATCCTGGCAAACAAACTAGTAATGGGGAGAGTTGGATTTAAGTTCCCAATCTTTCTCACATTGATCCATTATGTGACATCATGGTTGCTTCTTGCCATTTTCAAGACACTTTCAATTCTTCCAGTTGCTCCTCCGTCTAGAACTACTCCTTTCTCTTCTATCTTCTCCTTAGGTGCTGTCATGGCTTTTGCCTCGGGTCTTGCCAATACAAGCCTAAAGCATAACAGTGTTGGCTTCTACCAGATGGCTAAAATTGCTGTCACTCCTACCATTGTTTCTGCTGAGTTCATTCTCTTCAGGAAAACCATTTCTTTTAACAAGGTTTTGGCTTTAGCTGTTGTCTCAGCAGGTGTGGCAATAGCAACCGTAACAGACGTAGAGTTCAATGTGTTTGGTGCTTTAATTGCAATTGCATGGATAGTCCCAAGTGCCATAAACAAAATCTTATGGTCTAATCTGCAACAGCAAGCCAATTGGACGGCGCTCGCGCTGATGTGGAAGACAACCCCGGTCACAATATTCTTCCTACTAGCTCTGATGCCATGGTTGGATCCACCAGGAGTTCTACTTTTCCAATGGGATTTCAACAACACAACAGCCATTCTTATATCAGCACTCCTTGGTTTTCTCCTCCAGTGGTCTGGAGCTCTGGCACTTGGGGCAACCTCAGCGACTTCACACGTTGTTCTTGGACAGTTCAAGACTTGTGTGATACTACTAGGGGGCTATCTTATATTTAATTCGGATCCGGGGTTTGTGAGCATTTGCGGGGCTCTTGCAGCCCTCTGTGGAATGTCTGTTTACACATCACTAAACCTGCAAAAGTCGCAAGACAATGTCAGCATGCAGCTCCCAAAGCAAAGCTTACCGACGTTAAAACCAAAAGCCACCAACGAAGAAAGTGTAGAGTCAGATGTAGAGGATACCACCAACCCCACAACTGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

388

Amino Acids

41.79

Weight (kDa)

9.11

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55950 AT5G55950 AT5G55950 AT5G55950
fragaria_vesca FvH4_3g42500 FvH4_3g42500
malus_domestica MD11G1035900.v1.1
prunus_persica Prupe.6G026800_v2.0.a1 Prupe.6G026800_v2.0.a1
pyrus_communis pycom11g02970
rosa_chinensis RchiOBHm_Chr5g0076161
rosa_laevigata RLG00000036606
rosa_multiflora Rmu_ssc0000123.1_g000002
rosa_roxburghii Rroxscaffold_1G00005650
rosa_rugosa Rorug05G0445200
rosa_samantha Rh5AG501300 Rh5BG522800 Rh5CG546600 Rh5DG535200
rosa_wichuraiana Rw5G046530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 551
Acc36I ACCTGC 3 cut(s) 68, 551, 1038
AccB1I GGYRCC 1 cut(s) 137
AccII CGCG 1 cut(s) 701
AciI CCGC 1 cut(s) 981
AclWI GGATC 5 cut(s) 271, 758, 771, 953, 966
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 493
AcyI GRCGYC 1 cut(s) 138
AflIII ACRYGT 1 cut(s) 892
AgsI TTSAA 6 cut(s) 190, 316, 327, 598, 799, 913
AhlI ACTAGT 1 cut(s) 229
AjnI CCWGG 2 cut(s) 216, 769
AluBI AGCT 5 cut(s) 548, 746, 860, 1063, 1077
AluI AGCT 5 cut(s) 548, 746, 860, 1063, 1077
Alw21I GWGCWC 2 cut(s) 88, 862
Alw26I GTCTC 2 cut(s) 205, 559
AlwI GGATC 5 cut(s) 271, 758, 771, 953, 966
Ama87I CYCGRG 1 cut(s) 406
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 2 cut(s) 992, 1060
ApoI RAATTY 1 cut(s) 120
AspLEI GCGC 4 cut(s) 140, 147, 697, 703
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 2 cut(s) 722, 963
AsuII TTCGAA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 406
AxyI CCTNAGG 1 cut(s) 382
BamHI GGATCC 2 cut(s) 763, 958
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 2 cut(s) 862, 988
BbsI GAAGAC 1 cut(s) 719
Bbv12I GWGCWC 2 cut(s) 88, 862
BbvCI CCTCAGC 1 cut(s) 880
BbvI GCAGC 2 cut(s) 1004, 1072
BccI CCATC 1 cut(s) 451
BceAI ACGGC 1 cut(s) 708
BciT130I CCWGG 2 cut(s) 218, 771
BciVI GTATCC 1 cut(s) 1129
BcnI CCSGG 2 cut(s) 722, 963
BcoDI GTCTC 2 cut(s) 205, 559
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 4 cut(s) 230, 351, 743, 932
BfoI RGCGCY 3 cut(s) 141, 148, 698
BfuAI ACCTGC 3 cut(s) 68, 551, 1038
BfuI GTATCC 1 cut(s) 1129
BisI GCNGC 2 cut(s) 993, 1061
BlsI GCNGC 2 cut(s) 994, 1062
Bme1390I CCNGG 4 cut(s) 218, 722, 771, 963
BmeT110I CYCGRG 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 3 cut(s) 139, 765, 960
BmrFI CCNGG 4 cut(s) 218, 722, 771, 963
BmsI GCATC 2 cut(s) 55, 741
BpiI GAAGAC 1 cut(s) 719
BpmI CTGGAG 2 cut(s) 830, 876
Bpu10I CCTNAGC 1 cut(s) 880
Bpu14I TTCGAA 1 cut(s) 124
BpuMI CCSGG 2 cut(s) 722, 963
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 5 cut(s) 405, 720, 755, 832, 962
Bse1I ACTGG 4 cut(s) 93, 170, 335, 847
Bse21I CCTNAGG 1 cut(s) 382
BseBI CCWGG 2 cut(s) 218, 771
BseDI CCNNGG 5 cut(s) 405, 720, 755, 832, 962
BseMII CTCAG 4 cut(s) 112, 486, 570, 894
BseNI ACTGG 4 cut(s) 93, 170, 335, 847
BseRI GAGGAG 2 cut(s) 333, 833
BseXI GCAGC 2 cut(s) 1004, 1072
Bsh1236I CGCG 1 cut(s) 701
BshFI GGCC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 137
BsiHKAI GWGCWC 2 cut(s) 88, 862
BsiHKCI CYCGRG 1 cut(s) 406
BsiSI CCGG 2 cut(s) 722, 962
BslFI GGGAC 1 cut(s) 620
BsmAI GTCTC 2 cut(s) 205, 559
BsmFI GGGAC 1 cut(s) 620
BsnI GGCC 1 cut(s) 169
BsoBI CYCGRG 1 cut(s) 406
Bsp119I TTCGAA 1 cut(s) 124
Bsp1286I GDGCHC 3 cut(s) 88, 862, 988
Bsp143I GATC 3 cut(s) 276, 763, 958
Bsp19I CCATGG 1 cut(s) 755
BspACI CCGC 1 cut(s) 981
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 4 cut(s) 111, 487, 569, 893
BspFNI CGCG 1 cut(s) 701
BspLI GGNNCC 3 cut(s) 139, 765, 960
BspMI ACCTGC 3 cut(s) 68, 551, 1038
BspPI GGATC 5 cut(s) 271, 758, 771, 953, 966
BspT104I TTCGAA 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 137
BsrI ACTGG 4 cut(s) 93, 170, 335, 847
BssECI CCNNGG 5 cut(s) 405, 720, 755, 832, 962
BssMI GATC 3 cut(s) 276, 763, 958
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 2 cut(s) 755, 832
Bst2UI CCWGG 2 cut(s) 218, 771
Bst4CI ACNGT 4 cut(s) 62, 440, 580, 909
Bst6I CTCTTC 2 cut(s) 373, 512
BstACI GRCGYC 1 cut(s) 138
BstBI TTCGAA 1 cut(s) 124
BstC8I GCNNGC 3 cut(s) 681, 699, 1058
BstDEI CTNAG 5 cut(s) 98, 382, 495, 556, 880
BstDSI CCRYGG 1 cut(s) 755
BstFNI CGCG 1 cut(s) 701
BstH2I RGCGCY 3 cut(s) 141, 148, 698
BstHHI GCGC 4 cut(s) 140, 147, 697, 703
BstKTI GATC 3 cut(s) 279, 766, 961
BstMAI GTCTC 2 cut(s) 205, 559
BstMBI GATC 3 cut(s) 276, 763, 958
BstNI CCWGG 2 cut(s) 218, 771
BstNSI RCATGY 1 cut(s) 1060
BstSCI CCNGG 4 cut(s) 216, 720, 769, 961
BstUI CGCG 1 cut(s) 701
BstV1I GCAGC 2 cut(s) 1004, 1072
BstV2I GAAGAC 1 cut(s) 719
BstX2I RGATCY 2 cut(s) 763, 958
BstXI CCANNNNNNTGG 1 cut(s) 854
BstYI RGATCY 2 cut(s) 763, 958
Bsu36I CCTNAGG 1 cut(s) 382
BsuI GTATCC 1 cut(s) 1129
BsuRI GGCC 1 cut(s) 169
BtgI CCRYGG 1 cut(s) 755
BtsIMutI CAGTG 5 cut(s) 67, 86, 177, 445, 854
BveI ACCTGC 3 cut(s) 68, 551, 1038
Cac8I GCNNGC 3 cut(s) 681, 699, 1058
CfoI GCGC 4 cut(s) 140, 147, 697, 703
Cfr13I GGNCC 1 cut(s) 167
CviAII CATG 5 cut(s) 294, 394, 627, 756, 1057
DdeI CTNAG 5 cut(s) 98, 382, 495, 556, 880
DinI GGCGCC 1 cut(s) 139
DpnI GATC 3 cut(s) 278, 765, 960
DpnII GATC 3 cut(s) 276, 763, 958
Eam1104I CTCTTC 2 cut(s) 373, 512
EarI CTCTTC 2 cut(s) 373, 512
Ecl136II GAGCTC 1 cut(s) 860
Eco130I CCWWGG 2 cut(s) 755, 832
Eco24I GRGCYC 2 cut(s) 862, 988
Eco53kI GAGCTC 1 cut(s) 860
Eco57I CTGAAG 1 cut(s) 493
Eco81I CCTNAGG 1 cut(s) 382
Eco88I CYCGRG 1 cut(s) 406
EcoICRI GAGCTC 1 cut(s) 860
EcoRII CCWGG 2 cut(s) 216, 769
EcoT14I CCWWGG 2 cut(s) 755, 832
EcoT38I GRGCYC 2 cut(s) 862, 988
EgeI GGCGCC 1 cut(s) 139
EheI GGCGCC 1 cut(s) 139
ErhI CCWWGG 2 cut(s) 755, 832
FaeI CATG 5 cut(s) 297, 397, 630, 759, 1060
FalI AAGNNNNNCTT 2 cut(s) 1061, 1093
FaqI GGGAC 1 cut(s) 620
FatI CATG 5 cut(s) 293, 393, 626, 755, 1056
FauI CCCGC 1 cut(s) 974
Fnu4HI GCNGC 2 cut(s) 993, 1061
FriOI GRGCYC 2 cut(s) 862, 988
Fsp4HI GCNGC 2 cut(s) 993, 1061
FspBI CTAG 4 cut(s) 230, 351, 743, 932
GlaI GCGC 4 cut(s) 139, 146, 696, 702
GluI GCNGC 2 cut(s) 993, 1061
GsuI CTGGAG 2 cut(s) 830, 876
HaeII RGCGCY 3 cut(s) 141, 148, 698
HaeIII GGCC 1 cut(s) 169
HapII CCGG 2 cut(s) 722, 962
HhaI GCGC 4 cut(s) 140, 147, 697, 703
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 5 cut(s) 297, 397, 630, 759, 1060
Hin6I GCGC 4 cut(s) 138, 145, 695, 701
HinP1I GCGC 4 cut(s) 138, 145, 695, 701
HindIII AAGCTT 1 cut(s) 1075
HinfI GANTC 2 cut(s) 14, 1121
HpaII CCGG 2 cut(s) 722, 962
Hpy166II GTNNAC 1 cut(s) 1015
Hpy188I TCNGA 5 cut(s) 101, 133, 750, 958, 1126
Hpy188III TCNNGA 5 cut(s) 316, 351, 511, 855, 913
Hpy8I GTNNAC 1 cut(s) 1015
Hpy99I CGWCG 1 cut(s) 1087
HpyAV CCTTC 2 cut(s) 128, 196
HpyCH4III ACNGT 4 cut(s) 62, 440, 580, 909
HpyCH4IV ACGT 4 cut(s) 128, 588, 894, 1085
HpyCH4V TGCA 7 cut(s) 68, 620, 626, 673, 992, 1033, 1060
HpyF3I CTNAG 5 cut(s) 98, 382, 495, 556, 880
HpySE526I ACGT 4 cut(s) 128, 588, 894, 1085
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 5 cut(s) 297, 397, 630, 759, 1060
HspAI GCGC 4 cut(s) 138, 145, 695, 701
KasI GGCGCC 1 cut(s) 137
Kzo9I GATC 3 cut(s) 276, 763, 958
LmnI GCTCC 3 cut(s) 346, 857, 1068
Lsp1109I GCAGC 2 cut(s) 1004, 1072
LweI GCATC 2 cut(s) 55, 741
MaeI CTAG 4 cut(s) 230, 351, 743, 932
MaeII ACGT 4 cut(s) 128, 588, 894, 1085
MaeIII GTNAC 4 cut(s) 286, 472, 580, 724
MalI GATC 3 cut(s) 278, 765, 960
MboI GATC 3 cut(s) 276, 763, 958
MboII GAAGA 8 cut(s) 104, 323, 360, 367, 499, 724, 727, 1121
MfeI CAATTG 2 cut(s) 621, 685
MflI RGATCY 2 cut(s) 763, 958
MhlI GDGCHC 3 cut(s) 88, 862, 988
MluCI AATT 8 cut(s) 120, 190, 327, 465, 615, 621, 685, 952
Mly113I GGCGCC 1 cut(s) 138
MlyI GAGTC 1 cut(s) 1130
MmeI TCCRAC 2 cut(s) 226, 741
MnlI CCTC 7 cut(s) 95, 354, 415, 854, 889, 1007, 1126
MseI TTAA 6 cut(s) 36, 252, 528, 614, 951, 1088
MslI CAYNNNNRTG 1 cut(s) 438
MspI CCGG 2 cut(s) 722, 962
MspR9I CCNGG 4 cut(s) 218, 722, 771, 963
MunI CAATTG 2 cut(s) 621, 685
MvaI CCWGG 2 cut(s) 218, 771
MvnI CGCG 1 cut(s) 701
NarI GGCGCC 1 cut(s) 138
NciI CCSGG 2 cut(s) 722, 963
NcoI CCATGG 1 cut(s) 755
NdeII GATC 3 cut(s) 276, 763, 958
NlaIII CATG 5 cut(s) 297, 397, 630, 759, 1060
NlaIV GGNNCC 3 cut(s) 139, 765, 960
NmuCI GTSAC 3 cut(s) 286, 472, 724
NspI RCATGY 1 cut(s) 1060
NspV TTCGAA 1 cut(s) 124
PaeI GCATGC 1 cut(s) 1060
PaqCI CACCTGC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 1049
PkrI GCNGC 2 cut(s) 994, 1062
PleI GAGTC 1 cut(s) 1129
PluTI GGCGCC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 1129
Psp124BI GAGCTC 1 cut(s) 862
Psp6I CCWGG 2 cut(s) 216, 769
PspGI CCWGG 2 cut(s) 216, 769
PspN4I GGNNCC 3 cut(s) 139, 765, 960
PspPI GGNCC 1 cut(s) 167
PsuI RGATCY 2 cut(s) 763, 958
PsyI GACNNNGTC 1 cut(s) 1049
RseI CAYNNNNRTG 1 cut(s) 438
SacI GAGCTC 1 cut(s) 862
SaqAI TTAA 6 cut(s) 36, 252, 528, 614, 951, 1088
SatI GCNGC 2 cut(s) 993, 1061
Sau3AI GATC 3 cut(s) 276, 763, 958
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 1 cut(s) 1130
ScrFI CCNGG 4 cut(s) 218, 722, 771, 963
SduI GDGCHC 3 cut(s) 88, 862, 988
SfaNI GCATC 2 cut(s) 55, 741
SfoI GGCGCC 1 cut(s) 139
SfuI TTCGAA 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 438
SpeI ACTAGT 1 cut(s) 229
SphI GCATGC 1 cut(s) 1060
Sse9I AATT 8 cut(s) 120, 190, 327, 465, 615, 621, 685, 952
SsiI CCGC 1 cut(s) 981
SspDI GGCGCC 1 cut(s) 137
SspI AATATT 1 cut(s) 732
SspMI CTAG 4 cut(s) 230, 351, 743, 932
SstI GAGCTC 1 cut(s) 862
StyD4I CCNGG 4 cut(s) 216, 720, 769, 961
StyI CCWWGG 2 cut(s) 755, 832
TaaI ACNGT 4 cut(s) 62, 440, 580, 909
TaiI ACGT 4 cut(s) 131, 591, 897, 1088
TaqI TCGA 2 cut(s) 82, 124
TasI AATT 8 cut(s) 120, 190, 327, 465, 615, 621, 685, 952
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 6 cut(s) 36, 252, 528, 614, 951, 1088
Tru9I TTAA 6 cut(s) 36, 252, 528, 614, 951, 1088
TscAI CASTG 5 cut(s) 67, 93, 177, 445, 854
TseFI GTSAC 3 cut(s) 286, 472, 724
TseI GCWGC 2 cut(s) 992, 1060
Tsp45I GTSAC 3 cut(s) 286, 472, 724
TspDTI ATGAA 4 cut(s) 6, 132, 184, 490
TspGWI ACGGA 2 cut(s) 172, 336
TspRI CASTG 5 cut(s) 67, 93, 177, 445, 854
Tth111I GACNNNGTC 1 cut(s) 1049
XapI RAATTY 1 cut(s) 120
XbaI TCTAGA 1 cut(s) 350
XceI RCATGY 1 cut(s) 1060
XspI CTAG 4 cut(s) 230, 351, 743, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.