Rorug05G0445200

membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010952
Physical Location & Seq
Forward (+)
61658435 .. 61663403
4969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0445200.1

Sequence Viewer

Length: 951 bp
ATGTCCACCATGGATGCCATAAACACTTGTCACATTTGTTTCAAGAGGTACGACCTGAATGTGGACCTTTTGGATATTCATGCAGACAAAAGCACATTTCATCATTTTGATAAGTTCAATCTGAAGTACAACCACTGTGGTCAAAGTAGGCTCAGGGAGATTTTCCTTAAGCAGGATAATCTTATCCAAGGCTGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTTTCTGATCTTTCTGCCAGTAAATATCAGATGGCTGAGCACAGAATATCAAAATATGGCAGGAAGCAAAGTGAGTGGGACCAAATGGCTAGTTGGATAGTGAACAATGAATTGTACAGTGAGAATGTTCTGCCACGGCTGTACAATATATACCAGGAAATGGGGATAGTCACATCATTTCAGAACATTCTTGACAAAATCTTTAAACCGCTGTTTGAGGTTACCATAAATCCAGATTCCCACCTGCAGTTGCAGGTTTTTCTGAAACAGGTGATGAAGATGGAGGTTGACTACAAAGTCTGTCGAACAAGGAAATGCAGAACCTTCAAAGGTAGCCGAACACGGGCAGCTTTTGTCTTTATTATTGGATTTTGCTTGCTGGATCTTGCCAAGTTAGAAGGAAGGGCTGAAATTCAAGAAATTCACTTGCTTCTTCGATTCCTGCTGAAGGAAGGACTGCACCTACATATATATGTTAATTATGCTGAGATAACCCAATTCCTCCCAGAGGTCAGCCAGATAGTATTGTGCAGGACATTTAAAATATGGTTCGCTCCTACATTGAGAAGTTGTAAAAGAAACACTAGCTTTGATGACACTTGGTTTGAAATTTCCTCTCATACTGCCATTCTCTTTGTTCCAGATGCAACTAGTAATCATGAAATTCGGAGGGAATCTGTAGGAGAAGAAGGGAATCCAGATTCAAGCTGTGATAGAGCAATGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

316

Amino Acids

37.07

Weight (kDa)

7.17

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP_deaminase PF19326 14 - 169 5.8e-73 AMP deaminase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55950 AT5G55950 AT5G55950 AT5G55950
fragaria_vesca FvH4_3g42500 FvH4_3g42500
malus_domestica MD11G1035900.v1.1
prunus_persica Prupe.6G026800_v2.0.a1 Prupe.6G026800_v2.0.a1
pyrus_communis pycom11g02970
rosa_chinensis RchiOBHm_Chr5g0076161
rosa_laevigata RLG00000036606
rosa_multiflora Rmu_ssc0000123.1_g000002
rosa_roxburghii Rroxscaffold_1G00005650
rosa_rugosa Rorug05G0445200
rosa_samantha Rh5AG501300 Rh5BG522800 Rh5CG546600 Rh5DG535200
rosa_wichuraiana Rw5G046530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 474
AasI GACNNNNNNGTC 1 cut(s) 518
Acc36I ACCTGC 2 cut(s) 466, 474
AccB7I CCANNNNNTGG 1 cut(s) 382
AciI CCGC 1 cut(s) 431
AclWI GGATC 1 cut(s) 612
AcsI RAATTY 4 cut(s) 633, 642, 831, 885
AcuI CTGAAG 2 cut(s) 143, 689
AfaI GTAC 4 cut(s) 50, 128, 338, 365
AfiI CCNNNNNNNGG 6 cut(s) 61, 172, 382, 565, 670, 730
AflII CTTAAG 1 cut(s) 167
AgsI TTSAA 6 cut(s) 43, 118, 550, 638, 830, 927
AhlI ACTAGT 1 cut(s) 872
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 4 cut(s) 208, 572, 810, 930
AluI AGCT 4 cut(s) 208, 572, 810, 930
Alw21I GWGCWC 1 cut(s) 264
AlwI GGATC 1 cut(s) 612
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 4 cut(s) 633, 642, 831, 885
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
AspS9I GGNCC 2 cut(s) 64, 301
AsuHPI GGTGA 1 cut(s) 505
AvaII GGWCC 2 cut(s) 64, 301
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 581
BccI CCATC 2 cut(s) 247, 496
BceAI ACGGC 1 cut(s) 374
BciT130I CCWGG 1 cut(s) 377
BcuI ACTAGT 1 cut(s) 872
BfaI CTAG 3 cut(s) 312, 807, 873
BfmI CTRYAG 2 cut(s) 467, 900
BfrI CTTAAG 1 cut(s) 167
BfuAI ACCTGC 2 cut(s) 466, 474
BisI GCNGC 1 cut(s) 570
BlpI GCTNAGC 2 cut(s) 204, 258
BlsI GCNGC 1 cut(s) 571
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 2 cut(s) 64, 301
BmgT120I GGNCC 2 cut(s) 64, 301
BmiI GGNNCC 1 cut(s) 302
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 2 cut(s) 4, 856
Bpu10I CCTNAGC 1 cut(s) 152
Bpu1102I GCTNAGC 2 cut(s) 204, 258
BsaJI CCNNGG 3 cut(s) 9, 187, 356
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 172, 382, 565, 670, 730
Bse1I ACTGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 948
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 3 cut(s) 9, 187, 356
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 6 cut(s) 61, 172, 382, 565, 670, 730
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 4 cut(s) 166, 195, 249, 699
BseNI ACTGG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 581
BsgI GTGCAG 2 cut(s) 665, 772
BsiHKAI GWGCWC 1 cut(s) 264
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 6 cut(s) 61, 172, 382, 565, 670, 730
BsmFI GGGAC 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 264
Bsp1407I TGTACA 2 cut(s) 336, 363
Bsp143I GATC 2 cut(s) 229, 604
Bsp1720I GCTNAGC 2 cut(s) 204, 258
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 1 cut(s) 431
BspCNI CTCAG 4 cut(s) 165, 196, 250, 700
BspHI TCATGA 1 cut(s) 880
BspLI GGNNCC 1 cut(s) 302
BspMAI CTGCAG 1 cut(s) 471
BspMI ACCTGC 2 cut(s) 466, 474
BspPI GGATC 1 cut(s) 612
BspTI CTTAAG 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 948
BsrGI TGTACA 2 cut(s) 336, 363
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 3 cut(s) 9, 187, 356
BssMI GATC 2 cut(s) 229, 604
BssT1I CCWWGG 2 cut(s) 9, 187
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 137, 341
BstAFI CTTAAG 1 cut(s) 167
BstAUI TGTACA 2 cut(s) 336, 363
BstC8I GCNNGC 1 cut(s) 599
BstDEI CTNAG 4 cut(s) 152, 204, 258, 708
BstDSI CCRYGG 2 cut(s) 9, 356
BstEII GGTNACC 1 cut(s) 442
BstENI CCTNNNNNAGG 3 cut(s) 170, 668, 728
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 2 cut(s) 232, 607
BstMBI GATC 2 cut(s) 229, 604
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 377
BstPI GGTNACC 1 cut(s) 442
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 2 cut(s) 467, 900
BstV1I GCAGC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BtgI CCRYGG 2 cut(s) 9, 356
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 2 cut(s) 133, 346
BveI ACCTGC 2 cut(s) 466, 474
Cac8I GCNNGC 1 cut(s) 599
CciI TCATGA 1 cut(s) 880
Cfr13I GGNCC 2 cut(s) 64, 301
Csp6I GTAC 4 cut(s) 49, 127, 337, 364
CspCI CAANNNNNGTGG 4 cut(s) 118, 153, 278, 313
CviAII CATG 3 cut(s) 10, 80, 881
CviQI GTAC 4 cut(s) 49, 127, 337, 364
DdeI CTNAG 4 cut(s) 152, 204, 258, 708
DpnI GATC 2 cut(s) 231, 606
DpnII GATC 2 cut(s) 229, 604
DraI TTTAAA 2 cut(s) 427, 763
DrdI GACNNNNNNGTC 1 cut(s) 518
DseDI GACNNNNNNGTC 1 cut(s) 518
Eco130I CCWWGG 2 cut(s) 9, 187
Eco47I GGWCC 2 cut(s) 64, 301
Eco57I CTGAAG 2 cut(s) 143, 689
Eco91I GGTNACC 1 cut(s) 442
EcoNI CCTNNNNNAGG 3 cut(s) 170, 668, 728
EcoO65I GGTNACC 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 2 cut(s) 9, 187
ErhI CCWWGG 2 cut(s) 9, 187
FaeI CATG 3 cut(s) 13, 83, 884
FaqI GGGAC 1 cut(s) 314
FatI CATG 3 cut(s) 9, 79, 880
Fnu4HI GCNGC 1 cut(s) 570
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 570
FspBI CTAG 3 cut(s) 312, 807, 873
GluI GCNGC 1 cut(s) 570
Hin1II CATG 3 cut(s) 13, 83, 884
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 5 cut(s) 458, 660, 896, 916, 923
HphI GGTGA 1 cut(s) 505
Hpy166II GTNNAC 4 cut(s) 6, 64, 325, 511
Hpy188I TCNGA 6 cut(s) 123, 229, 252, 405, 486, 891
Hpy188III TCNNGA 7 cut(s) 43, 413, 455, 638, 863, 881, 920
Hpy8I GTNNAC 4 cut(s) 6, 64, 325, 511
HpyAV CCTTC 6 cut(s) 556, 614, 618, 664, 668, 905
HpyCH4III ACNGT 2 cut(s) 137, 341
HpyCH4V TGCA 7 cut(s) 83, 469, 475, 540, 682, 753, 869
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 4 cut(s) 152, 204, 258, 708
Hsp92II CATG 3 cut(s) 13, 83, 884
Kzo9I GATC 2 cut(s) 229, 604
LmnI GCTCC 1 cut(s) 781
Lsp1109I GCAGC 1 cut(s) 581
LweI GCATC 2 cut(s) 4, 856
MaeI CTAG 3 cut(s) 312, 807, 873
MaeIII GTNAC 3 cut(s) 29, 391, 442
MalI GATC 2 cut(s) 231, 606
MboI GATC 2 cut(s) 229, 604
MboII GAAGA 3 cut(s) 511, 647, 920
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 7 cut(s) 332, 633, 642, 700, 719, 831, 885
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 7 cut(s) 39, 433, 499, 724, 734, 847, 885
MseI TTAA 4 cut(s) 168, 426, 699, 762
MslI CAYNNNNRTG 1 cut(s) 693
MspA1I CMGCKG 1 cut(s) 433
MspCI CTTAAG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 214
NcoI CCATGG 1 cut(s) 9
NdeII GATC 2 cut(s) 229, 604
NlaIII CATG 3 cut(s) 13, 83, 884
NlaIV GGNNCC 1 cut(s) 302
NmuCI GTSAC 2 cut(s) 29, 391
PagI TCATGA 1 cut(s) 880
PaqCI CACCTGC 1 cut(s) 474
PfeI GAWTC 5 cut(s) 458, 660, 896, 916, 923
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 1 cut(s) 571
Psp6I CCWGG 1 cut(s) 375
PspEI GGTNACC 1 cut(s) 442
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 302
PspPI GGNCC 2 cut(s) 64, 301
PstI CTGCAG 1 cut(s) 471
PsuI RGATCY 1 cut(s) 604
RsaI GTAC 4 cut(s) 50, 128, 338, 365
RsaNI GTAC 4 cut(s) 49, 127, 337, 364
RseI CAYNNNNRTG 1 cut(s) 693
SaqAI TTAA 4 cut(s) 168, 426, 699, 762
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 2 cut(s) 229, 604
Sau96I GGNCC 2 cut(s) 64, 301
ScrFI CCNGG 1 cut(s) 377
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 2 cut(s) 4, 856
SfcI CTRYAG 2 cut(s) 467, 900
SinI GGWCC 2 cut(s) 64, 301
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SpeI ACTAGT 1 cut(s) 872
Sse9I AATT 7 cut(s) 332, 633, 642, 700, 719, 831, 885
SsiI CCGC 1 cut(s) 431
SspMI CTAG 3 cut(s) 312, 807, 873
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 2 cut(s) 9, 187
TaaI ACNGT 2 cut(s) 137, 341
TaqI TCGA 2 cut(s) 526, 658
TasI AATT 7 cut(s) 332, 633, 642, 700, 719, 831, 885
TatI WGTACW 3 cut(s) 126, 336, 363
TfiI GAWTC 5 cut(s) 458, 660, 896, 916, 923
Tru1I TTAA 4 cut(s) 168, 426, 699, 762
Tru9I TTAA 4 cut(s) 168, 426, 699, 762
TscAI CASTG 2 cut(s) 140, 346
TseFI GTSAC 2 cut(s) 29, 391
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 2 cut(s) 29, 391
TspDTI ATGAA 5 cut(s) 68, 89, 345, 512, 897
TspRI CASTG 2 cut(s) 140, 346
Van91I CCANNNNNTGG 1 cut(s) 382
Vha464I CTTAAG 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 64, 301
XagI CCTNNNNNAGG 3 cut(s) 170, 668, 728
XapI RAATTY 4 cut(s) 633, 642, 831, 885
XspI CTAG 3 cut(s) 312, 807, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.