Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014598

Physical Location & Seq

Genomic Coordinates Forward (+)

22865074 .. 22868036

Gene Structure 2963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGGTAACTGTTGGTGTAGATTTGAGCCCTTAAACCACAGAGTTTCTGCAAACGCTAAATCAGAGTCACCAAAAGAACAGAGTCCAACAGTAGAAGATAAACATATTAAGGAAGTTCAAAAGCTGCCATCAAATCCAAAAGAAGTAGAAGATCTAAGACGTGACTCAGCAGCGAATCCTCTTATAGCTTTCACATACGAAGAGCTTAAGAACATTACAAGTAATTTTAGACAAGACAGAGTTCTTGGTGGTGGTGGATTTGGAAGTGTCTACAAAGGGTTTATAAAAGAGGATTTGGGTGATCAAGAAGTTCCTGAACCACTTCCTGTTGCCGTTAAAGTTCATGATGGTGATAATAGCTTTCAGGGTCACAGAGAATGGCTGGCAGAGGTGATATTCTTGGGGCAGCTTTCACATCCAAACTTAGTGAAATTGATCGGTTATTGCTGTGAGGATAATCACCGAGTGCTAATCTATGAGTACATGGCTCGTGGTAGCGTGGAGAACAATCTTTTCTCAAGAGTGTTGCTTCCTCTTTCATGGGCAATAAGAATGAAGATTGCTTTCGGAGCTGCGAAAGGACTTGCCTTTCTTCATGAAGCAAAGAAACCCGTCATTTATCGCGATTTCAAAACTTCGAACATTCTTCTAGATATGGATTACAACGCCAAATTATCTGATTTTGGACTTGCTAAAGACGGTCCTGTAGGAGATAAATCCCATGTTTCCACTCGTATAATGGGAACTTATGGCTATGCAGCTCCTGAATACATCATGACAGGGCATTTGACACCGGGGAGTGATGTGTATAGTTTCGGTGTAGTTCTGTTAGAGCTTCTTACGGGAAGAAAATCATTAGACAAATCACGGCCAACACGTGAGCAAAACCTCATAGATTGGGCTCTTCCATTGTTGAAGGAGAAGAAGAAAGTCTTGAACATTGTAGACCCAAAAATGAACTGTGAGTATCCGGTTAAAGCGGTTCAAAAGGCTGCAATGTTAGCTTACCATTGCCTGAACCGTAACCCGAAGGCTCGGCCTTTAATGCGTGACATTGTTGATTCTTTGGAGCCTCTTCAGGCCACAGAAGAGGAGGCTTTACTAGTCCCTCCTGTTCAGAAAGCAGTAATTACTATTATCGACGAAATGCCTAAGAATGGATTGAAGAAAGTTGAAGAATTGAAGAAGGTTGAAGAAGTGAAGAAGGTTATTGAAGATGCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

408

Amino Acids

45.87

Weight (kDa)

7.14

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	77 - 354	5.7e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	78 - 356	1.4e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56460
fragaria_vesca	FvH4_3g45820
malus_domestica	MD03G1002700.v1.1 MD11G1002600.v1.1
prunus_persica	Prupe.6G002400_v2.0.a1
pyrus_communis	pycom03g00260 pycom11g00240
rosa_chinensis	RchiOBHm_Chr5g0083901
rosa_laevigata	RLG00000037063
rosa_multiflora	Rmu_sc0001137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00000700
rosa_rugosa	Rorug05G0487400.1 Rorug05G0487500.1
rosa_samantha	Rh5AG540300 Rh5CG587200 Rh5DG573800
rosa_wichuraiana	Rw5G050230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AccI	GTMKAC	2 cut(s)	270, 945
AccII	CGCG	1 cut(s)	624
AciI	CCGC	1 cut(s)	980
AcoI	YGGCCR	1 cut(s)	869
AcuI	CTGAAG	1 cut(s)	1061
AcvI	CACGTG	1 cut(s)	878
AdeI	CACNNNGTG	1 cut(s)	466
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	1157
AflII	CTTAAG	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	875
AhlI	ACTAGT	1 cut(s)	1102
AjiI	CACGTC	1 cut(s)	161
AluBI	AGCT	9 cut(s)	124, 188, 205, 360, 409, 572, 761, 835, 1004
AluI	AGCT	9 cut(s)	124, 188, 205, 360, 409, 572, 761, 835, 1004
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	3 cut(s)	869, 1037, 1080
ApeKI	GCWGC	6 cut(s)	124, 170, 406, 572, 758, 992
ArsI	GACNNNNNNTTYG	2 cut(s)	769, 801
Asp700I	GAANNNNTTC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	701
AsuC2I	CCSGG	1 cut(s)	795
AsuHPI	GGTGA	5 cut(s)	60, 311, 362, 403, 452
AsuII	TTCGAA	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	701
BanII	GRGCYC	2 cut(s)	30, 904
BauI	CACGAG	1 cut(s)	489
BbrPI	CACGTG	1 cut(s)	878
BbvI	GCAGC	6 cut(s)	111, 182, 418, 559, 770, 979
BccI	CCATC	2 cut(s)	136, 341
BceAI	ACGGC	2 cut(s)	317, 884
BciVI	GTATCC	1 cut(s)	978
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	795
BcuI	ACTAGT	1 cut(s)	1102
BfaI	CTAG	2 cut(s)	650, 1103
BfmI	CTRYAG	1 cut(s)	705
BfrI	CTTAAG	1 cut(s)	206
BfuI	GTATCC	1 cut(s)	978
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	6 cut(s)	125, 171, 407, 573, 759, 993
BlsI	GCNGC	6 cut(s)	126, 172, 408, 574, 760, 994
Bme1390I	CCNGG	1 cut(s)	795
Bme18I	GGWCC	1 cut(s)	701
BmgBI	CACGTC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	701
BmiI	GGNNCC	1 cut(s)	1071
BmrFI	CCNGG	1 cut(s)	795
BmsI	GCATC	1 cut(s)	1207
Bpu14I	TTCGAA	1 cut(s)	638
BpuEI	CTTGAG	1 cut(s)	502
BpuMI	CCSGG	1 cut(s)	795
BsaAI	YACGTR	1 cut(s)	878
BsaJI	CCNNGG	1 cut(s)	794
BsaWI	WCCGGW	1 cut(s)	970
Bsc4I	CCNNNNNNNGG	1 cut(s)	1157
Bse3DI	GCAATG	2 cut(s)	1002, 1009
BseDI	CCNNGG	1 cut(s)	794
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	1157
BseMI	GCAATG	2 cut(s)	1002, 1009
BseMII	CTCAG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	1106
BseXI	GCAGC	6 cut(s)	111, 182, 418, 559, 770, 979
Bsh1236I	CGCG	1 cut(s)	624
BshFI	GGCC	3 cut(s)	871, 1039, 1082
BsiSI	CCGG	2 cut(s)	794, 971
BslFI	GGGAC	1 cut(s)	1091
BslI	CCNNNNNNNGG	1 cut(s)	1157
BsmFI	GGGAC	1 cut(s)	1091
BsnI	GGCC	3 cut(s)	871, 1039, 1082
Bsp119I	TTCGAA	1 cut(s)	638
Bsp1286I	GDGCHC	2 cut(s)	30, 904
Bsp143I	GATC	3 cut(s)	151, 301, 435
Bsp68I	TCGCGA	1 cut(s)	624
BspACI	CCGC	1 cut(s)	980
BspANI	GGCC	3 cut(s)	871, 1039, 1082
BspCNI	CTCAG	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	624
BspHI	TCATGA	3 cut(s)	343, 595, 774
BspLI	GGNNCC	1 cut(s)	1071
BspQI	GCTCTTC	2 cut(s)	195, 909
BspT104I	TTCGAA	1 cut(s)	638
BspTI	CTTAAG	1 cut(s)	206
BsrDI	GCAATG	2 cut(s)	1002, 1009
BssECI	CCNNGG	1 cut(s)	794
BssMI	GATC	3 cut(s)	151, 301, 435
BssSI	CACGAG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	489
Bst4CI	ACNGT	5 cut(s)	11, 91, 701, 962, 1022
Bst6I	CTCTTC	4 cut(s)	195, 909, 1080, 1083
BstAFI	CTTAAG	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	878
BstBI	TTCGAA	1 cut(s)	638
BstC8I	GCNNGC	2 cut(s)	384, 1222
BstDEI	CTNAG	4 cut(s)	155, 166, 424, 1152
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	1 cut(s)	624
BstKTI	GATC	3 cut(s)	154, 304, 438
BstMBI	GATC	3 cut(s)	151, 301, 435
BstMWI	GCNNNNNNNGC	3 cut(s)	569, 1001, 1045
BstNSI	RCATGY	1 cut(s)	1224
BstSCI	CCNGG	1 cut(s)	793
BstSFI	CTRYAG	1 cut(s)	705
BstUI	CGCG	1 cut(s)	624
BstV1I	GCAGC	6 cut(s)	111, 182, 418, 559, 770, 979
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	978
BsuRI	GGCC	3 cut(s)	871, 1039, 1082
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	415
BtuMI	TCGCGA	1 cut(s)	624
Cac8I	GCNNGC	2 cut(s)	384, 1222
CaiI	CAGNNNCTG	1 cut(s)	764
CciI	TCATGA	3 cut(s)	343, 595, 774
Cfr13I	GGNCC	1 cut(s)	701
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	7 cut(s)	344, 484, 540, 596, 722, 775, 1221
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	4 cut(s)	155, 166, 424, 1152
DpnI	GATC	3 cut(s)	153, 303, 437
DpnII	GATC	3 cut(s)	151, 301, 435
DraIII	CACNNNGTG	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	869
Eam1104I	CTCTTC	4 cut(s)	195, 909, 1080, 1083
EarI	CTCTTC	4 cut(s)	195, 909, 1080, 1083
Eco24I	GRGCYC	2 cut(s)	30, 904
Eco47I	GGWCC	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	1061
Eco72I	CACGTG	1 cut(s)	878
EcoT22I	ATGCAT	1 cut(s)	1222
EcoT38I	GRGCYC	2 cut(s)	30, 904
FaeI	CATG	7 cut(s)	347, 487, 543, 599, 725, 778, 1224
FalI	AAGNNNNNCTT	2 cut(s)	917, 949
FaqI	GGGAC	1 cut(s)	1091
FatI	CATG	7 cut(s)	343, 483, 539, 595, 721, 774, 1220
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	2 cut(s)	270, 945
Fnu4HI	GCNGC	6 cut(s)	125, 171, 407, 573, 759, 993
FokI	GGATG	1 cut(s)	402
FriOI	GRGCYC	2 cut(s)	30, 904
Fsp4HI	GCNGC	6 cut(s)	125, 171, 407, 573, 759, 993
FspBI	CTAG	2 cut(s)	650, 1103
GluI	GCNGC	6 cut(s)	125, 171, 407, 573, 759, 993
HaeIII	GGCC	3 cut(s)	871, 1039, 1082
HapII	CCGG	2 cut(s)	794, 971
Hin1II	CATG	7 cut(s)	347, 487, 543, 599, 725, 778, 1224
HinfI	GANTC	5 cut(s)	65, 82, 164, 175, 1061
HpaII	CCGG	2 cut(s)	794, 971
HphI	GGTGA	5 cut(s)	60, 311, 362, 403, 452
Hpy166II	GTNNAC	2 cut(s)	271, 946
Hpy188I	TCNGA	4 cut(s)	64, 569, 679, 1119
Hpy8I	GTNNAC	2 cut(s)	271, 946
Hpy99I	CGWCG	1 cut(s)	1145
HpyAV	CCTTC	4 cut(s)	910, 1024, 1180, 1198
HpyCH4III	ACNGT	5 cut(s)	11, 91, 701, 962, 1022
HpyCH4IV	ACGT	2 cut(s)	160, 877
HpyCH4V	TGCA	4 cut(s)	50, 758, 995, 1220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	569, 1001, 1045
HpyF3I	CTNAG	4 cut(s)	155, 166, 424, 1152
HpySE526I	ACGT	2 cut(s)	160, 877
Hsp92II	CATG	7 cut(s)	347, 487, 543, 599, 725, 778, 1224
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	151, 301, 435
LguI	GCTCTTC	2 cut(s)	195, 909
LmnI	GCTCC	3 cut(s)	569, 766, 1069
Lsp1109I	GCAGC	6 cut(s)	111, 182, 418, 559, 770, 979
LweI	GCATC	1 cut(s)	1207
MaeI	CTAG	2 cut(s)	650, 1103
MaeII	ACGT	2 cut(s)	160, 877
MaeIII	GTNAC	6 cut(s)	5, 66, 161, 368, 1022, 1049
MalI	GATC	3 cut(s)	153, 303, 437
MboI	GATC	3 cut(s)	151, 301, 435
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	30, 904
MluCI	AATT	5 cut(s)	223, 431, 671, 1128, 1178
MlyI	GAGTC	3 cut(s)	74, 91, 158
MmeI	TCCRAC	1 cut(s)	110
Mph1103I	ATGCAT	1 cut(s)	1222
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	6 cut(s)	32, 108, 207, 336, 975, 1043
MslI	CAYNNNNRTG	1 cut(s)	348
MspCI	CTTAAG	1 cut(s)	206
MspI	CCGG	2 cut(s)	794, 971
MspR9I	CCNGG	1 cut(s)	795
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	3 cut(s)	569, 1001, 1045
NciI	CCSGG	1 cut(s)	795
NdeII	GATC	3 cut(s)	151, 301, 435
NlaIII	CATG	7 cut(s)	347, 487, 543, 599, 725, 778, 1224
NlaIV	GGNNCC	1 cut(s)	1071
NmeAIII	GCCGAG	1 cut(s)	1015
NmuCI	GTSAC	4 cut(s)	66, 161, 368, 1049
NruI	TCGCGA	1 cut(s)	624
NsiI	ATGCAT	1 cut(s)	1222
NspI	RCATGY	1 cut(s)	1224
NspV	TTCGAA	1 cut(s)	638
PaeI	GCATGC	1 cut(s)	1224
PagI	TCATGA	3 cut(s)	343, 595, 774
PciSI	GCTCTTC	2 cut(s)	195, 909
PcsI	WCGNNNNNNNCGW	1 cut(s)	874
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	175, 1061
PkrI	GCNGC	6 cut(s)	126, 172, 408, 574, 760, 994
PleI	GAGTC	3 cut(s)	73, 90, 158
PmaCI	CACGTG	1 cut(s)	878
PmlI	CACGTG	1 cut(s)	878
PpsI	GAGTC	3 cut(s)	73, 90, 158
Ppu21I	YACGTR	1 cut(s)	878
PsiI	TTATAA	1 cut(s)	284
PspCI	CACGTG	1 cut(s)	878
PspN4I	GGNNCC	1 cut(s)	1071
PspPI	GGNCC	1 cut(s)	701
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	151
RruI	TCGCGA	1 cut(s)	624
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
RseI	CAYNNNNRTG	1 cut(s)	348
SapI	GCTCTTC	2 cut(s)	195, 909
SaqAI	TTAA	6 cut(s)	32, 108, 207, 336, 975, 1043
SatI	GCNGC	6 cut(s)	125, 171, 407, 573, 759, 993
Sau3AI	GATC	3 cut(s)	151, 301, 435
Sau96I	GGNCC	1 cut(s)	701
SchI	GAGTC	3 cut(s)	74, 91, 158
ScrFI	CCNGG	1 cut(s)	795
SduI	GDGCHC	2 cut(s)	30, 904
SfaNI	GCATC	1 cut(s)	1207
SfcI	CTRYAG	1 cut(s)	705
SfuI	TTCGAA	1 cut(s)	638
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	2 cut(s)	206, 517
SmoI	CTYRAG	2 cut(s)	206, 517
SpeI	ACTAGT	1 cut(s)	1102
SphI	GCATGC	1 cut(s)	1224
Sse9I	AATT	5 cut(s)	223, 431, 671, 1128, 1178
SsiI	CCGC	1 cut(s)	980
SspMI	CTAG	2 cut(s)	650, 1103
StyD4I	CCNGG	1 cut(s)	793
TaaI	ACNGT	5 cut(s)	11, 91, 701, 962, 1022
TaiI	ACGT	2 cut(s)	163, 880
TaqI	TCGA	2 cut(s)	638, 1140
TasI	AATT	5 cut(s)	223, 431, 671, 1128, 1178
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	2 cut(s)	175, 1061
Tru1I	TTAA	6 cut(s)	32, 108, 207, 336, 975, 1043
Tru9I	TTAA	6 cut(s)	32, 108, 207, 336, 975, 1043
TseFI	GTSAC	4 cut(s)	66, 161, 368, 1049
TseI	GCWGC	6 cut(s)	124, 170, 406, 572, 758, 992
Tsp45I	GTSAC	4 cut(s)	66, 161, 368, 1049
TspDTI	ATGAA	6 cut(s)	332, 528, 569, 584, 612, 971
Vha464I	CTTAAG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	701
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	1 cut(s)	1224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	736
XmiI	GTMKAC	2 cut(s)	270, 945
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	2 cut(s)	650, 1103
Zsp2I	ATGCAT	1 cut(s)	1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.