Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0014598

Physical Location & Seq

Genomic Coordinates Forward (+)

203558 .. 206724

Gene Structure 3167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00240.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGGGAATTGCTGGTACAGGTGGGAACCTTCTGTATACAGAGTCTCTTCCAATGCCAAGTCAGAGTCCCCAAAAGAGCAGAGCCCCTCAGTGAAACATAGGGAAGATGATAGTAAGTTACCATCAAATCCTGAAGAAGTTGAGATCCTACGTCGTGATTCAGCTGCAAATCCTTTGATTGCATTCACATTCAGTGAACTAAAGATAATCACTGCAAACTTCAGGCAAGATCGCATGTTGGGTGGGGGAGGATTTGGAAGTGTGTATAAAGGGTTCATTACTGAGGATTTAAGAGAGGGGATTGACCCCCTTCCGGTAGCTGTTAAAGTTCATGACGGTGATAACAGTTATCAAGGACACAGAGAATGGCTGGCCGAAGTCATATTTTTGGGGCAGCTTTCTCATCCAAATTTGGTAAAGCTCATCGGATATTGTTGTGAGGATGAACAACGGGTGCTGATATATGAGTATATGGCTCGGGGTAGTGTGGAAAACAATTTATTTTCCAGAGTGCTGCTTCCTCTGCCTTGGTCCATAAGGATGAAGATTGCATTTGGTGCTGCTAAAGGACTTGCCTTTCTCCATGAGGCCGAGAAACCTGTCATCTATCGTGATTTTAAGACATCTAATATTCTGTTGGATCTGGACTACAATGCAAAGCTCTCTGACTTTGGCCTTGCAAAAGATGGACCGGTGGGGGACAAATCTCATGTTTCTACACGCATAATGGGGACATATGGATATGCCGCACCTGAGTACATCTTGACAGGCCATCTAACTCCTAGAAGTGATGTTTATAGCTTTGGTGTTGTTCTTCTCGAACTTCTGACCGGTAGGAAATCTTTAGACAAGTCACGGCCAGCCCGAGAGCAAAACCTTACTGACTGGGCTCTCCCAATGCTGAAAGAGAAGAAGAAGGTGCTGAACATCGTTGATCCAAGACTAGAAGGAGATTATCCTGTTAAAGGAGTTCAAAAGGCAGCCATGCTAGTGTATCATTGCTTGAACCGAAACCCAAAAGCAAGGCCTCTAATGCGAGATATTGTTGACTCTTTGGAGCCTCTGCAGGTTCCGGAGGAAGTTTCTGACAAAAAAACTGTAACCGAGATCATCCAGTTTCCGGAAGCTGAAACTAAAAGAAAAGAAGACCCAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

386

Amino Acids

43.53

Weight (kDa)

6.49

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56460
fragaria_vesca	FvH4_3g45820
malus_domestica	MD03G1002700.v1.1 MD11G1002600.v1.1
prunus_persica	Prupe.6G002400_v2.0.a1
pyrus_communis	pycom03g00260 pycom11g00240
rosa_chinensis	RchiOBHm_Chr5g0083901
rosa_laevigata	RLG00000037063
rosa_multiflora	Rmu_sc0001137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00000700
rosa_rugosa	Rorug05G0487400.1 Rorug05G0487500.1
rosa_samantha	Rh5AG540300 Rh5CG587200 Rh5DG573800
rosa_wichuraiana	Rw5G050230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1057
AccI	GTMKAC	1 cut(s)	36
AccIII	TCCGGA	2 cut(s)	1072, 1120
AciI	CCGC	1 cut(s)	747
AclWI	GGATC	3 cut(s)	139, 648, 929
AcoI	YGGCCR	2 cut(s)	372, 857
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	2 cut(s)	153, 205
AfaI	GTAC	2 cut(s)	17, 758
AfiI	CCNNNNNNNGG	3 cut(s)	313, 965, 1120
AgeI	ACCGGT	2 cut(s)	691, 830
AgsI	TTSAA	2 cut(s)	974, 1006
AluBI	AGCT	7 cut(s)	164, 320, 397, 421, 661, 801, 1127
AluI	AGCT	7 cut(s)	164, 320, 397, 421, 661, 801, 1127
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	3 cut(s)	139, 648, 929
Ama87I	CYCGRG	2 cut(s)	477, 864
Aor13HI	TCCGGA	2 cut(s)	1072, 1120
AoxI	GGCC	6 cut(s)	372, 588, 673, 769, 857, 1025
ApeKI	GCWGC	5 cut(s)	164, 394, 514, 560, 980
ApoI	RAATTY	1 cut(s)	409
AsiGI	ACCGGT	2 cut(s)	691, 830
AspS9I	GGNCC	2 cut(s)	531, 689
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	2 cut(s)	477, 864
AvaII	GGWCC	2 cut(s)	531, 689
BanII	GRGCYC	2 cut(s)	86, 892
BbsI	GAAGAC	1 cut(s)	1152
BbvI	GCAGC	5 cut(s)	151, 406, 501, 547, 992
BccI	CCATC	3 cut(s)	130, 680, 780
BceAI	ACGGC	1 cut(s)	872
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	3 cut(s)	783, 944, 989
BfmI	CTRYAG	1 cut(s)	1064
BfuAI	ACCTGC	1 cut(s)	1057
BisI	GCNGC	6 cut(s)	165, 395, 515, 561, 747, 981
BlsI	GCNGC	6 cut(s)	166, 396, 516, 562, 748, 982
Bme18I	GGWCC	2 cut(s)	531, 689
BmeT110I	CYCGRG	2 cut(s)	477, 864
BmgT120I	GGNCC	2 cut(s)	531, 689
BmiI	GGNNCC	3 cut(s)	27, 1059, 1071
BmrI	ACTGGG	2 cut(s)	895, 1145
BmuI	ACTGGG	2 cut(s)	895, 1145
BpiI	GAAGAC	1 cut(s)	1152
BsaJI	CCNNGG	1 cut(s)	527
BsaWI	WCCGGW	5 cut(s)	313, 691, 830, 1072, 1120
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 965, 1120
Bse118I	RCCGGY	2 cut(s)	691, 830
Bse1I	ACTGG	3 cut(s)	890, 1114, 1151
Bse3DI	GCAATG	1 cut(s)	997
BseAI	TCCGGA	2 cut(s)	1072, 1120
BseDI	CCNNGG	1 cut(s)	527
BseGI	GGATG	4 cut(s)	403, 448, 546, 1110
BseLI	CCNNNNNNNGG	3 cut(s)	313, 965, 1120
BseMI	GCAATG	1 cut(s)	997
BseMII	CTCAG	3 cut(s)	102, 273, 744
BseNI	ACTGG	3 cut(s)	890, 1114, 1151
BseXI	GCAGC	5 cut(s)	151, 406, 501, 547, 992
BshFI	GGCC	6 cut(s)	374, 590, 675, 771, 859, 1027
BshTI	ACCGGT	2 cut(s)	691, 830
BsiHKCI	CYCGRG	2 cut(s)	477, 864
BsiSI	CCGG	5 cut(s)	314, 692, 831, 1073, 1121
BslFI	GGGAC	3 cut(s)	52, 713, 745
BslI	CCNNNNNNNGG	3 cut(s)	313, 965, 1120
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	3 cut(s)	52, 713, 745
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	6 cut(s)	374, 590, 675, 771, 859, 1027
BsoBI	CYCGRG	2 cut(s)	477, 864
Bsp1286I	GDGCHC	2 cut(s)	86, 892
Bsp13I	TCCGGA	2 cut(s)	1072, 1120
Bsp143I	GATC	5 cut(s)	144, 229, 640, 934, 1107
BspACI	CCGC	1 cut(s)	747
BspANI	GGCC	6 cut(s)	374, 590, 675, 771, 859, 1027
BspCNI	CTCAG	3 cut(s)	101, 274, 745
BspEI	TCCGGA	2 cut(s)	1072, 1120
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	3 cut(s)	27, 1059, 1071
BspMAI	CTGCAG	1 cut(s)	1068
BspMI	ACCTGC	1 cut(s)	1057
BspPI	GGATC	3 cut(s)	139, 648, 929
BsrDI	GCAATG	1 cut(s)	997
BsrFI	RCCGGY	2 cut(s)	691, 830
BsrI	ACTGG	3 cut(s)	890, 1114, 1151
BssAI	RCCGGY	2 cut(s)	691, 830
BssECI	CCNNGG	1 cut(s)	527
BssMI	GATC	5 cut(s)	144, 229, 640, 934, 1107
BssNAI	GTATAC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	527
Bst1107I	GTATAC	1 cut(s)	37
Bst4CI	ACNGT	3 cut(s)	338, 347, 1099
Bst6I	CTCTTC	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	372, 861
BstDEI	CTNAG	3 cut(s)	88, 282, 753
BstENI	CCTNNNNNAGG	1 cut(s)	963
BstF5I	GGATG	4 cut(s)	403, 448, 546, 1110
BstKTI	GATC	5 cut(s)	147, 232, 643, 937, 1110
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	5 cut(s)	144, 229, 640, 934, 1107
BstMWI	GCNNNNNNNGC	3 cut(s)	523, 557, 1033
BstNSI	RCATGY	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	1064
BstV1I	GCAGC	5 cut(s)	151, 406, 501, 547, 992
BstV2I	GAAGAC	1 cut(s)	1152
BstX2I	RGATCY	2 cut(s)	144, 640
BstYI	RGATCY	2 cut(s)	144, 640
BstZ17I	GTATAC	1 cut(s)	37
BsuRI	GGCC	6 cut(s)	374, 590, 675, 771, 859, 1027
BtsCI	GGATG	4 cut(s)	403, 448, 546, 1110
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	4 cut(s)	96, 199, 210, 1158
BveI	ACCTGC	1 cut(s)	1057
Cac8I	GCNNGC	2 cut(s)	372, 861
CciI	TCATGA	1 cut(s)	331
Cfr10I	RCCGGY	2 cut(s)	691, 830
Cfr13I	GGNCC	2 cut(s)	531, 689
Csp6I	GTAC	2 cut(s)	16, 757
CspAI	ACCGGT	2 cut(s)	691, 830
CviAII	CATG	5 cut(s)	235, 332, 584, 710, 985
CviQI	GTAC	2 cut(s)	16, 757
DdeI	CTNAG	3 cut(s)	88, 282, 753
DpnI	GATC	5 cut(s)	146, 231, 642, 936, 1109
DpnII	GATC	5 cut(s)	144, 229, 640, 934, 1107
EaeI	YGGCCR	2 cut(s)	372, 857
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	527
Eco147I	AGGCCT	1 cut(s)	1027
Eco24I	GRGCYC	2 cut(s)	86, 892
Eco47I	GGWCC	2 cut(s)	531, 689
Eco57I	CTGAAG	2 cut(s)	153, 205
Eco88I	CYCGRG	2 cut(s)	477, 864
EcoNI	CCTNNNNNAGG	1 cut(s)	963
EcoT14I	CCWWGG	1 cut(s)	527
EcoT38I	GRGCYC	2 cut(s)	86, 892
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	5 cut(s)	238, 335, 587, 713, 988
FaqI	GGGAC	3 cut(s)	52, 713, 745
FatI	CATG	5 cut(s)	234, 331, 583, 709, 984
FauNDI	CATATG	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	6 cut(s)	165, 395, 515, 561, 747, 981
FokI	GGATG	4 cut(s)	390, 455, 553, 1097
FriOI	GRGCYC	2 cut(s)	86, 892
Fsp4HI	GCNGC	6 cut(s)	165, 395, 515, 561, 747, 981
FspBI	CTAG	3 cut(s)	783, 944, 989
GluI	GCNGC	6 cut(s)	165, 395, 515, 561, 747, 981
HaeIII	GGCC	6 cut(s)	374, 590, 675, 771, 859, 1027
HapII	CCGG	5 cut(s)	314, 692, 831, 1073, 1121
Hin1II	CATG	5 cut(s)	238, 335, 587, 713, 988
HincII	GTYRAC	1 cut(s)	1048
HindII	GTYRAC	1 cut(s)	1048
HinfI	GANTC	4 cut(s)	42, 65, 158, 1049
HpaII	CCGG	5 cut(s)	314, 692, 831, 1073, 1121
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	3 cut(s)	37, 197, 1048
Hpy188I	TCNGA	5 cut(s)	64, 428, 667, 828, 1087
Hpy8I	GTNNAC	3 cut(s)	37, 197, 1048
Hpy99I	CGWCG	1 cut(s)	156
HpyAV	CCTTC	4 cut(s)	39, 320, 910, 941
HpyCH4III	ACNGT	3 cut(s)	338, 347, 1099
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	7 cut(s)	167, 182, 215, 551, 656, 680, 1066
HpyF10VI	GCNNNNNNNGC	3 cut(s)	523, 557, 1033
HpyF3I	CTNAG	3 cut(s)	88, 282, 753
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	5 cut(s)	238, 335, 587, 713, 988
Kpn2I	TCCGGA	2 cut(s)	1072, 1120
Kzo9I	GATC	5 cut(s)	144, 229, 640, 934, 1107
LmnI	GCTCC	1 cut(s)	1057
Lsp1109I	GCAGC	5 cut(s)	151, 406, 501, 547, 992
MaeI	CTAG	3 cut(s)	783, 944, 989
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	3 cut(s)	117, 852, 1099
MalI	GATC	5 cut(s)	146, 231, 642, 936, 1109
MboI	GATC	5 cut(s)	144, 229, 640, 934, 1107
MboII	GAAGA	8 cut(s)	39, 116, 146, 556, 806, 922, 925, 1157
MflI	RGATCY	2 cut(s)	144, 640
MhlI	GDGCHC	2 cut(s)	86, 892
MluCI	AATT	3 cut(s)	7, 409, 496
MlyI	GAGTC	3 cut(s)	51, 74, 1043
MmeI	TCCRAC	1 cut(s)	618
MroI	TCCGGA	2 cut(s)	1072, 1120
MseI	TTAA	4 cut(s)	290, 324, 618, 963
MslI	CAYNNNNRTG	3 cut(s)	336, 539, 989
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	5 cut(s)	314, 692, 831, 1073, 1121
Mva1269I	GAATGC	1 cut(s)	182
MwoI	GCNNNNNNNGC	3 cut(s)	523, 557, 1033
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	5 cut(s)	144, 229, 640, 934, 1107
NlaIII	CATG	5 cut(s)	238, 335, 587, 713, 988
NlaIV	GGNNCC	3 cut(s)	27, 1059, 1071
NmeAIII	GCCGAG	1 cut(s)	616
NmuCI	GTSAC	1 cut(s)	852
NspI	RCATGY	1 cut(s)	238
PagI	TCATGA	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	1027
PcsI	WCGNNNNNNNCGW	1 cut(s)	862
PctI	GAATGC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	158
PinAI	ACCGGT	2 cut(s)	691, 830
PkrI	GCNGC	6 cut(s)	166, 396, 516, 562, 748, 982
PleI	GAGTC	3 cut(s)	50, 73, 1043
PpsI	GAGTC	3 cut(s)	50, 73, 1043
PspN4I	GGNNCC	3 cut(s)	27, 1059, 1071
PspPI	GGNCC	2 cut(s)	531, 689
PsrI	GAACNNNNNNTAC	2 cut(s)	257, 289
PstI	CTGCAG	1 cut(s)	1068
PsuI	RGATCY	2 cut(s)	144, 640
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	2 cut(s)	17, 758
RsaNI	GTAC	2 cut(s)	16, 757
RseI	CAYNNNNRTG	3 cut(s)	336, 539, 989
SaqAI	TTAA	4 cut(s)	290, 324, 618, 963
SatI	GCNGC	6 cut(s)	165, 395, 515, 561, 747, 981
Sau3AI	GATC	5 cut(s)	144, 229, 640, 934, 1107
Sau96I	GGNCC	2 cut(s)	531, 689
SchI	GAGTC	3 cut(s)	51, 74, 1043
SduI	GDGCHC	2 cut(s)	86, 892
SfcI	CTRYAG	1 cut(s)	1064
SinI	GGWCC	2 cut(s)	531, 689
SmiMI	CAYNNNNRTG	3 cut(s)	336, 539, 989
Sse9I	AATT	3 cut(s)	7, 409, 496
SseBI	AGGCCT	1 cut(s)	1027
SsiI	CCGC	1 cut(s)	747
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	3 cut(s)	783, 944, 989
StuI	AGGCCT	1 cut(s)	1027
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	3 cut(s)	338, 347, 1099
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	819
TasI	AATT	3 cut(s)	7, 409, 496
TatI	WGTACW	1 cut(s)	756
TauI	GCSGC	1 cut(s)	749
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	4 cut(s)	290, 324, 618, 963
Tru9I	TTAA	4 cut(s)	290, 324, 618, 963
TscAI	CASTG	4 cut(s)	96, 199, 217, 1158
TseFI	GTSAC	1 cut(s)	852
TseI	GCWGC	5 cut(s)	164, 394, 514, 560, 980
Tsp45I	GTSAC	1 cut(s)	852
TspDTI	ATGAA	4 cut(s)	265, 320, 459, 557
TspRI	CASTG	4 cut(s)	96, 199, 217, 1158
VpaK11BI	GGWCC	2 cut(s)	531, 689
XagI	CCTNNNNNAGG	1 cut(s)	963
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	3 cut(s)	783, 944, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.