Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014598

Physical Location & Seq

Genomic Coordinates Reverse (-)

88088032 .. 88092085

Gene Structure 4054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG573800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGGAATTGTTGGTGCAGCAGGTGGGGGGAGCCTTCAGTTCACAGAGTCTCATCCAATGCAAAGTCAGAATCCCCAAAAGACCAGAGCCCCTCAGTGAACCCTAGGGAGGATGATAGTAAGTTACCATCCAATCCTGAAGAAGTTGAGATCCTACGTCGTGATTCAGCTGCAAATCCATTGATCGCATTCACATTCAATGAACTAAAGATAATCACTGCAAATTTTAGGCAAGATCGTTTGTTGGGTGGTGGAGGATTTGGAAGTGTTTATAAAGGTTTCATTACGGAGGATTTAAGAGAGGGGCTCTCTTCCCTTCCAGTAGCCGTCAAGGTTCATGACGGCGATAACAGTTATCAAGGTCACAGAGAATGGCTGGACTTTCATGGGCCGATTCTTAAGACTGTATCTCACATGCGTATTCCCTCCGTTTTCCCAGAAGTGCTGCTTCCTTTGCCTTGGTCCGTAAGGATGAAGATTGCGTTTGGTGCAGCTAAAGGACTTGCTTTTCTCCATGATGCAGAGAAACCTGTTATCTATCGTGATTTCAAAACATCTAATATTCTGTTGGATCTGGACTACAATGCAAAGCTTTCTGACTTTGGCCTTGCGAAAGATGGACCAGTTGGGGACAAATCTCATGTTTCTACACGCATAATGGGGACGAACCCAAAGGCAAGGCCTCTGATGCGCGATATTGTAGATACTTTGGAGCCTCTGCAGGGACAAGAAATGTGGTATAAAATAGATTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

251

Amino Acids

28.03

Weight (kDa)

6.39

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	156 - 209	1e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	160 - 211	2.6e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56460
fragaria_vesca	FvH4_3g45820
malus_domestica	MD03G1002700.v1.1 MD11G1002600.v1.1
prunus_persica	Prupe.6G002400_v2.0.a1
pyrus_communis	pycom03g00260 pycom11g00240
rosa_chinensis	RchiOBHm_Chr5g0083901
rosa_laevigata	RLG00000037063
rosa_multiflora	Rmu_sc0001137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00000700
rosa_rugosa	Rorug05G0487400.1 Rorug05G0487500.1
rosa_samantha	Rh5AG540300 Rh5CG587200 Rh5DG573800
rosa_wichuraiana	Rw5G050230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AarI	CACCTGC	1 cut(s)	12
Acc36I	ACCTGC	1 cut(s)	12
AccII	CGCG	1 cut(s)	693
AclWI	GGATC	2 cut(s)	145, 579
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	2 cut(s)	21, 159
AfiI	CCNNNNNNNGG	2 cut(s)	109, 722
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	2 cut(s)	199, 550
AluBI	AGCT	3 cut(s)	170, 494, 592
AluI	AGCT	3 cut(s)	170, 494, 592
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	2 cut(s)	145, 579
AoxI	GGCC	3 cut(s)	389, 604, 680
ApeKI	GCWGC	4 cut(s)	18, 170, 445, 491
ApoI	RAATTY	1 cut(s)	223
AspA2I	CCTAGG	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	693
AspS9I	GGNCC	3 cut(s)	389, 462, 620
AvaII	GGWCC	2 cut(s)	462, 620
AvrII	CCTAGG	1 cut(s)	104
BanII	GRGCYC	2 cut(s)	92, 309
BbvI	GCAGC	4 cut(s)	30, 157, 432, 503
BccI	CCATC	2 cut(s)	136, 611
BceAI	ACGGC	2 cut(s)	311, 358
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	719
BfrI	CTTAAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	12
BisI	GCNGC	4 cut(s)	19, 171, 446, 492
BlnI	CCTAGG	1 cut(s)	104
BlsI	GCNGC	4 cut(s)	20, 172, 447, 493
Bme18I	GGWCC	2 cut(s)	462, 620
BmgT120I	GGNCC	3 cut(s)	389, 462, 620
BmiI	GGNNCC	2 cut(s)	33, 714
BmsI	GCATC	2 cut(s)	508, 678
BplI	GAGNNNNNCTC	4 cut(s)	291, 323, 293, 325
BsaJI	CCNNGG	2 cut(s)	104, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 722
Bse1I	ACTGG	2 cut(s)	320, 623
BseDI	CCNNGG	2 cut(s)	104, 458
BseGI	GGATG	4 cut(s)	53, 118, 128, 477
BseLI	CCNNNNNNNGG	2 cut(s)	109, 722
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	320, 623
BseXI	GCAGC	4 cut(s)	30, 157, 432, 503
BsgI	GTGCAG	2 cut(s)	37, 510
Bsh1236I	CGCG	1 cut(s)	693
BshFI	GGCC	3 cut(s)	391, 606, 682
BslFI	GGGAC	3 cut(s)	644, 676, 738
BslI	CCNNNNNNNGG	2 cut(s)	109, 722
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	3 cut(s)	644, 676, 738
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	391, 606, 682
Bsp1286I	GDGCHC	2 cut(s)	92, 309
Bsp143I	GATC	4 cut(s)	150, 183, 235, 571
BspANI	GGCC	3 cut(s)	391, 606, 682
BspCNI	CTCAG	1 cut(s)	107
BspFNI	CGCG	1 cut(s)	693
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	33, 714
BspMAI	CTGCAG	1 cut(s)	723
BspMI	ACCTGC	1 cut(s)	12
BspPI	GGATC	2 cut(s)	145, 579
BspTI	CTTAAG	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	320, 623
BssECI	CCNNGG	2 cut(s)	104, 458
BssMI	GATC	4 cut(s)	150, 183, 235, 571
BssT1I	CCWWGG	2 cut(s)	104, 458
Bst4CI	ACNGT	2 cut(s)	353, 406
Bst6I	CTCTTC	1 cut(s)	316
BstAFI	CTTAAG	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	94
BstF5I	GGATG	4 cut(s)	53, 118, 128, 477
BstFNI	CGCG	1 cut(s)	693
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	4 cut(s)	153, 186, 238, 574
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	4 cut(s)	150, 183, 235, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	454, 488, 688
BstNSI	RCATGY	1 cut(s)	418
BstSFI	CTRYAG	1 cut(s)	719
BstUI	CGCG	1 cut(s)	693
BstV1I	GCAGC	4 cut(s)	30, 157, 432, 503
BstX2I	RGATCY	2 cut(s)	150, 571
BstYI	RGATCY	2 cut(s)	150, 571
BsuRI	GGCC	3 cut(s)	391, 606, 682
BtsCI	GGATG	4 cut(s)	53, 118, 128, 477
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	102, 216
BveI	ACCTGC	1 cut(s)	12
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	1 cut(s)	693
Cfr13I	GGNCC	3 cut(s)	389, 462, 620
CspCI	CAANNNNNGTGG	2 cut(s)	716, 751
CviAII	CATG	5 cut(s)	338, 386, 415, 515, 641
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	4 cut(s)	152, 185, 237, 573
DpnII	GATC	4 cut(s)	150, 183, 235, 571
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	104, 458
Eco147I	AGGCCT	1 cut(s)	682
Eco24I	GRGCYC	2 cut(s)	92, 309
Eco47I	GGWCC	2 cut(s)	462, 620
Eco57I	CTGAAG	2 cut(s)	21, 159
EcoT14I	CCWWGG	2 cut(s)	104, 458
EcoT38I	GRGCYC	2 cut(s)	92, 309
ErhI	CCWWGG	2 cut(s)	104, 458
FaeI	CATG	5 cut(s)	341, 389, 418, 518, 644
FaiI	YATR	8 cut(s)	273, 339, 387, 416, 516, 642, 656, 741
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	3 cut(s)	644, 676, 738
FatI	CATG	5 cut(s)	337, 385, 414, 514, 640
Fnu4HI	GCNGC	4 cut(s)	19, 171, 446, 492
FokI	GGATG	4 cut(s)	40, 115, 125, 484
FriOI	GRGCYC	2 cut(s)	92, 309
Fsp4HI	GCNGC	4 cut(s)	19, 171, 446, 492
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	4 cut(s)	19, 171, 446, 492
HaeIII	GGCC	3 cut(s)	391, 606, 682
HhaI	GCGC	1 cut(s)	693
Hin1II	CATG	5 cut(s)	341, 389, 418, 518, 644
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	5 cut(s)	48, 71, 164, 394, 749
Hpy166II	GTNNAC	2 cut(s)	43, 100
Hpy188I	TCNGA	3 cut(s)	70, 598, 687
Hpy188III	TCNNGA	5 cut(s)	137, 161, 338, 542, 575
Hpy8I	GTNNAC	2 cut(s)	43, 100
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	45, 326
HpyCH4III	ACNGT	2 cut(s)	353, 406
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	8 cut(s)	18, 62, 173, 221, 491, 521, 587, 721
HpyF10VI	GCNNNNNNNGC	3 cut(s)	454, 488, 688
HpyF3I	CTNAG	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	5 cut(s)	341, 389, 418, 518, 644
HspAI	GCGC	1 cut(s)	691
Kzo9I	GATC	4 cut(s)	150, 183, 235, 571
LmnI	GCTCC	2 cut(s)	31, 712
Lsp1109I	GCAGC	4 cut(s)	30, 157, 432, 503
LweI	GCATC	2 cut(s)	508, 678
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	123, 362
MalI	GATC	4 cut(s)	152, 185, 237, 573
MboI	GATC	4 cut(s)	150, 183, 235, 571
MboII	GAAGA	3 cut(s)	152, 303, 487
MflI	RGATCY	2 cut(s)	150, 571
MhlI	GDGCHC	2 cut(s)	92, 309
MluCI	AATT	2 cut(s)	7, 223
MlyI	GAGTC	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	549
MnlI	CCTC	8 cut(s)	103, 103, 248, 283, 295, 436, 693, 726
MseI	TTAA	2 cut(s)	296, 399
MspA1I	CMGCKG	1 cut(s)	170
MspCI	CTTAAG	1 cut(s)	398
Mva1269I	GAATGC	1 cut(s)	188
MvnI	CGCG	1 cut(s)	693
MwoI	GCNNNNNNNGC	3 cut(s)	454, 488, 688
NdeII	GATC	4 cut(s)	150, 183, 235, 571
NlaIII	CATG	5 cut(s)	341, 389, 418, 518, 644
NlaIV	GGNNCC	2 cut(s)	33, 714
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	1 cut(s)	418
PagI	TCATGA	1 cut(s)	337
PaqCI	CACCTGC	1 cut(s)	12
PceI	AGGCCT	1 cut(s)	682
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	4 cut(s)	71, 164, 394, 749
PkrI	GCNGC	4 cut(s)	20, 172, 447, 493
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PsiI	TTATAA	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	33, 714
PspPI	GGNCC	3 cut(s)	389, 462, 620
PstI	CTGCAG	1 cut(s)	723
PsuI	RGATCY	2 cut(s)	150, 571
PvuII	CAGCTG	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	296, 399
SatI	GCNGC	4 cut(s)	19, 171, 446, 492
Sau3AI	GATC	4 cut(s)	150, 183, 235, 571
Sau96I	GGNCC	3 cut(s)	389, 462, 620
SchI	GAGTC	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	92, 309
SetI	ASST	9 cut(s)	26, 160, 172, 280, 336, 364, 496, 532, 594
SfaNI	GCATC	2 cut(s)	508, 678
SfcI	CTRYAG	1 cut(s)	719
SinI	GGWCC	2 cut(s)	462, 620
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	2 cut(s)	7, 223
SseBI	AGGCCT	1 cut(s)	682
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	682
StyI	CCWWGG	2 cut(s)	104, 458
TaaI	ACNGT	2 cut(s)	353, 406
TaiI	ACGT	1 cut(s)	160
TasI	AATT	2 cut(s)	7, 223
TfiI	GAWTC	4 cut(s)	71, 164, 394, 749
Tru1I	TTAA	2 cut(s)	296, 399
Tru9I	TTAA	2 cut(s)	296, 399
TscAI	CASTG	2 cut(s)	102, 223
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	4 cut(s)	18, 170, 445, 491
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	5 cut(s)	216, 271, 326, 374, 488
TspGWI	ACGGA	3 cut(s)	302, 418, 454
TspRI	CASTG	2 cut(s)	102, 223
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	462, 620
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	418
XmaJI	CCTAGG	1 cut(s)	104
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.