Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014598

Physical Location & Seq

Genomic Coordinates Reverse (-)

92810659 .. 92813521

Gene Structure 2863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG540300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGGAATTGTTGGTGCAGCAGGTGGGGGGAGCCTTCAGTTCACAGAGTCTCATCCAATGCAAAGTCAGAATCCCCAAAAGACCAGAGCCCCTCAGTGAACCCTAGGGAGGATGATAGTAAGCTACCATCCAATCCTGAAGAAGTTGAGATCCTACGTTGTGATTCAGCTGCAAATCCATTGATCGCATTCACATTCAATGAACTAAAGATAATCACTGCAAATTTTAGGCAAGATCGTTTGTTGGGTGGTGGAGGATTTGGAAGTGTTTATAAAGGTTTCATTACAGAGGATTTAAGAGAGGGGCTCTCTTCCCTTCCAGTAGCCGTCAAGGTTCATGACGGCGATAACAGTTATCAAGGTCACAGAGAATGGCTGGCTCGGGCTTTCATAATAAATCCTAGCACGTACTATTGTTCCTATGTGGTCATGAAAAAATCTAGGATTGGTGGAACAATCTTTATCCTTCTGAGTAATTCCAATTCATTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

164

Amino Acids

18.17

Weight (kDa)

6.82

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56460
fragaria_vesca	FvH4_3g45820
malus_domestica	MD03G1002700.v1.1 MD11G1002600.v1.1
prunus_persica	Prupe.6G002400_v2.0.a1
pyrus_communis	pycom03g00260 pycom11g00240
rosa_chinensis	RchiOBHm_Chr5g0083901
rosa_laevigata	RLG00000037063
rosa_multiflora	Rmu_sc0001137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00000700
rosa_rugosa	Rorug05G0487400.1 Rorug05G0487500.1
rosa_samantha	Rh5AG540300 Rh5CG587200 Rh5DG573800
rosa_wichuraiana	Rw5G050230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AarI	CACCTGC	1 cut(s)	12
Acc36I	ACCTGC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	2 cut(s)	21, 159
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	199
AluBI	AGCT	2 cut(s)	124, 170
AluI	AGCT	2 cut(s)	124, 170
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	145
Ama87I	CYCGRG	1 cut(s)	381
ApeKI	GCWGC	2 cut(s)	18, 170
ApoI	RAATTY	1 cut(s)	223
AspA2I	CCTAGG	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	381
AvrII	CCTAGG	1 cut(s)	104
BanII	GRGCYC	2 cut(s)	92, 309
BbvI	GCAGC	2 cut(s)	30, 157
BccI	CCATC	1 cut(s)	136
BceAI	ACGGC	2 cut(s)	311, 358
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	3 cut(s)	105, 402, 441
BfuAI	ACCTGC	1 cut(s)	12
BisI	GCNGC	2 cut(s)	19, 171
BlnI	CCTAGG	1 cut(s)	104
BlsI	GCNGC	2 cut(s)	20, 172
BmeT110I	CYCGRG	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	33
BplI	GAGNNNNNCTC	4 cut(s)	291, 323, 293, 325
BsaAI	YACGTR	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	3 cut(s)	53, 118, 128
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	108, 461
BseNI	ACTGG	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	30, 157
BsgI	GTGCAG	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	92, 309
Bsp143I	GATC	3 cut(s)	150, 183, 235
BspCNI	CTCAG	2 cut(s)	107, 462
BspHI	TCATGA	2 cut(s)	337, 429
BspLI	GGNNCC	1 cut(s)	33
BspMI	ACCTGC	1 cut(s)	12
BspPI	GGATC	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	3 cut(s)	150, 183, 235
BssT1I	CCWWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	316
BstBAI	YACGTR	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	94, 470
BstF5I	GGATG	3 cut(s)	53, 118, 128
BstKTI	GATC	3 cut(s)	153, 186, 238
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	3 cut(s)	150, 183, 235
BstV1I	GCAGC	2 cut(s)	30, 157
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BtsCI	GGATG	3 cut(s)	53, 118, 128
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	102, 216
BveI	ACCTGC	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	378
CciI	TCATGA	2 cut(s)	337, 429
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	2 cut(s)	338, 430
CviJI	RGCY	9 cut(s)	34, 90, 124, 170, 307, 326, 376, 380, 386
CviKI_1	RGCY	9 cut(s)	34, 90, 124, 170, 307, 326, 376, 380, 386
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	94, 470
DpnI	GATC	3 cut(s)	152, 185, 237
DpnII	GATC	3 cut(s)	150, 183, 235
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	2 cut(s)	92, 309
Eco57I	CTGAAG	2 cut(s)	21, 159
Eco88I	CYCGRG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	104
EcoT38I	GRGCYC	2 cut(s)	92, 309
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	2 cut(s)	341, 433
FaiI	YATR	5 cut(s)	273, 339, 392, 423, 431
FatI	CATG	2 cut(s)	337, 429
Fnu4HI	GCNGC	2 cut(s)	19, 171
FokI	GGATG	3 cut(s)	40, 115, 125
FriOI	GRGCYC	2 cut(s)	92, 309
Fsp4HI	GCNGC	2 cut(s)	19, 171
FspBI	CTAG	3 cut(s)	105, 402, 441
GluI	GCNGC	2 cut(s)	19, 171
Hin1II	CATG	2 cut(s)	341, 433
HinfI	GANTC	3 cut(s)	48, 71, 164
Hpy166II	GTNNAC	2 cut(s)	43, 100
Hpy188I	TCNGA	2 cut(s)	70, 471
Hpy188III	TCNNGA	3 cut(s)	137, 338, 430
Hpy8I	GTNNAC	2 cut(s)	43, 100
HpyAV	CCTTC	3 cut(s)	45, 326, 476
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	2 cut(s)	157, 407
HpyCH4V	TGCA	4 cut(s)	18, 62, 173, 221
HpyF3I	CTNAG	2 cut(s)	94, 470
HpySE526I	ACGT	2 cut(s)	157, 407
Hsp92II	CATG	2 cut(s)	341, 433
Kzo9I	GATC	3 cut(s)	150, 183, 235
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	5 cut(s)	7, 98, 150, 333, 362
Lsp1109I	GCAGC	2 cut(s)	30, 157
MaeI	CTAG	3 cut(s)	105, 402, 441
MaeII	ACGT	2 cut(s)	157, 407
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	3 cut(s)	152, 185, 237
MboI	GATC	3 cut(s)	150, 183, 235
MboII	GAAGA	2 cut(s)	152, 303
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	92, 309
MluCI	AATT	4 cut(s)	7, 223, 475, 481
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	103, 103, 248, 283, 295
MseI	TTAA	2 cut(s)	296, 493
MspA1I	CMGCKG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	188
NdeII	GATC	3 cut(s)	150, 183, 235
NlaIII	CATG	2 cut(s)	341, 433
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	362
PagI	TCATGA	2 cut(s)	337, 429
PaqCI	CACCTGC	1 cut(s)	12
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	71, 164
PkrI	GCNGC	2 cut(s)	20, 172
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Ppu21I	YACGTR	1 cut(s)	408
PsiI	TTATAA	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	296, 493
SatI	GCNGC	2 cut(s)	19, 171
Sau3AI	GATC	3 cut(s)	150, 183, 235
SchI	GAGTC	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	92, 309
SetI	ASST	8 cut(s)	26, 126, 160, 172, 280, 336, 364, 410
Sse9I	AATT	4 cut(s)	7, 223, 475, 481
SspMI	CTAG	3 cut(s)	105, 402, 441
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	2 cut(s)	160, 410
TasI	AATT	4 cut(s)	7, 223, 475, 481
TfiI	GAWTC	2 cut(s)	71, 164
Tru1I	TTAA	2 cut(s)	296, 493
Tru9I	TTAA	2 cut(s)	296, 493
TscAI	CASTG	2 cut(s)	102, 223
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	2 cut(s)	18, 170
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	6 cut(s)	216, 271, 326, 379, 446, 474
TspRI	CASTG	2 cut(s)	102, 223
XapI	RAATTY	1 cut(s)	223
XmaJI	CCTAGG	1 cut(s)	104
XspI	CTAG	3 cut(s)	105, 402, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.