Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014598

Physical Location & Seq

Genomic Coordinates Forward (+)

299940 .. 304410

Gene Structure 4471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G002400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGGTAACTGTTGGGTCAGGTGGAAGCCTTCAGTTTACAGAGTCTCTTCCAATGCAAAGTCAGAGTCCCCAAAAGACCAGAGCCCCTCAGTGAATCCTAGGGAAGATGATAGTAAGTTACCATCGAATCCTGAAGAGGTTGAGATCCTACGCCGTGATTCAGCTGCAAATCCTTTGATTGCATTCACATTCAGTGAGCTAAAGATAATCACTGGAAATTTTAGGCAAGATCGCATGTTGGGTGGTGGAGGATTTGGAAGTGTGTATAAAGGGTTCATCACTGAGGATTTAAGAGAGGGGATTTCCCCCCTTGCTGTAGCTGTTAAAGTTCATGACGGTGATAACAGTTATCAAGGACACAGAGAATGGCTGGCAGAAGTCATATTTTTGGGGCAGCTTTCTCATCCAAATTTGGTAAAGCTCATTGGATATTGCTGCGAGGATGAACAGCGGGTGCTGATATATGAGTATATGGCTCGGGGAAGTGTGGAAAACAATTTATTTTCAAGAGTGCTGCTTCCTATGCCTTGGTCCATACGGATGAAGATTGCATTTGGTGCAGCTAAAGGACTTGCCTTTCTCCATGAAGCTGAGAAACCTGTCATCTATCGTGATTTTAAGACATCTAATATTCTGTTGGATCTGGACTACAATGCAAAGCTCTCTGACTTTGGCCTTGCGAAAGATGGACCAGTGGGAGACAAATCTCATGTTTCTACACGCATAATGGGGACATATGGATATGCCGCACCTGAGTATATCTTGACAGGCCATCTAACTCCCAGAAGTGATGTTTATAGCTTTGGTGTTGTTCTTCTCGAACTGCTGACGGGAAGAAAATCTTTAGACAAGTCACGGCCAGCCCGGGAACAAAACCTTACTGATTGGGCTCTCCCCATGCTCAAAGAGAAGAAGAAATTGCTCAACATCGTTGATCCGAGACTAGAAGGAGATTATCCTATTAAAGGAGTTCATAAGGCAGCCATGCTAGTTTATCATTGCTTGAACCGAAACCCAAAAGCAAGGCCTCTAATGCGAGACATTGTAGACTCTTTGGAACCTCTGCAGGTCCCTGAGGAAGTTTCTGCCGAAAAAACTATAATAGAGGTTAGCCAGTTTCCGAATGCTGAAACTAAAACGAAAGAAGATTCACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

386

Amino Acids

43.26

Weight (kDa)

6.73

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56460
fragaria_vesca	FvH4_3g45820
malus_domestica	MD03G1002700.v1.1 MD11G1002600.v1.1
prunus_persica	Prupe.6G002400_v2.0.a1
pyrus_communis	pycom03g00260 pycom11g00240
rosa_chinensis	RchiOBHm_Chr5g0083901
rosa_laevigata	RLG00000037063
rosa_multiflora	Rmu_sc0001137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00000700
rosa_rugosa	Rorug05G0487400.1 Rorug05G0487500.1
rosa_samantha	Rh5AG540300 Rh5CG587200 Rh5DG573800
rosa_wichuraiana	Rw5G050230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1057
AccI	GTMKAC	1 cut(s)	1047
AciI	CCGC	2 cut(s)	451, 747
AclWI	GGATC	3 cut(s)	139, 648, 929
AcoI	YGGCCR	1 cut(s)	857
AcsI	RAATTY	2 cut(s)	217, 409
AcuI	CTGAAG	2 cut(s)	15, 153
AfiI	CCNNNNNNNGG	1 cut(s)	965
AgsI	TTSAA	2 cut(s)	507, 1006
AluBI	AGCT	9 cut(s)	164, 199, 320, 397, 421, 563, 590, 661, 801
AluI	AGCT	9 cut(s)	164, 199, 320, 397, 421, 563, 590, 661, 801
Alw26I	GTCTC	4 cut(s)	49, 693, 934, 1032
AlwI	GGATC	3 cut(s)	139, 648, 929
Ama87I	CYCGRG	2 cut(s)	477, 864
AoxI	GGCC	4 cut(s)	673, 769, 857, 1025
ApeKI	GCWGC	6 cut(s)	164, 394, 435, 514, 560, 980
ApoI	RAATTY	2 cut(s)	217, 409
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspA2I	CCTAGG	1 cut(s)	98
AspS9I	GGNCC	3 cut(s)	531, 689, 1069
AsuC2I	CCSGG	2 cut(s)	865, 866
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	2 cut(s)	477, 864
AvaII	GGWCC	3 cut(s)	531, 689, 1069
AvrII	CCTAGG	1 cut(s)	98
AxyI	CCTNAGG	1 cut(s)	1074
BanII	GRGCYC	2 cut(s)	86, 892
BbvI	GCAGC	6 cut(s)	151, 406, 422, 501, 572, 992
BccI	CCATC	3 cut(s)	130, 680, 780
BceAI	ACGGC	2 cut(s)	138, 872
BcnI	CCSGG	2 cut(s)	865, 866
BcoDI	GTCTC	4 cut(s)	49, 693, 934, 1032
BfaI	CTAG	3 cut(s)	99, 944, 989
BfmI	CTRYAG	2 cut(s)	315, 1064
BfuAI	ACCTGC	1 cut(s)	1057
BisI	GCNGC	7 cut(s)	165, 395, 436, 515, 561, 747, 981
BlnI	CCTAGG	1 cut(s)	98
BlsI	GCNGC	7 cut(s)	166, 396, 437, 516, 562, 748, 982
Bme1390I	CCNGG	2 cut(s)	865, 866
Bme18I	GGWCC	3 cut(s)	531, 689, 1069
BmeT110I	CYCGRG	2 cut(s)	477, 864
BmgT120I	GGNCC	3 cut(s)	531, 689, 1069
BmiI	GGNNCC	2 cut(s)	1059, 1071
BmrFI	CCNGG	2 cut(s)	865, 866
BpuMI	CCSGG	2 cut(s)	865, 866
BsaJI	CCNNGG	3 cut(s)	98, 527, 864
Bsc4I	CCNNNNNNNGG	1 cut(s)	965
Bse1I	ACTGG	3 cut(s)	217, 692, 1114
Bse21I	CCTNAGG	1 cut(s)	1074
Bse3DI	GCAATG	1 cut(s)	997
BseDI	CCNNGG	3 cut(s)	98, 527, 864
BseGI	GGATG	3 cut(s)	403, 448, 546
BseLI	CCNNNNNNNGG	1 cut(s)	965
BseMI	GCAATG	1 cut(s)	997
BseMII	CTCAG	5 cut(s)	102, 273, 582, 744, 1065
BseNI	ACTGG	3 cut(s)	217, 692, 1114
BseXI	GCAGC	6 cut(s)	151, 406, 422, 501, 572, 992
BsgI	GTGCAG	1 cut(s)	579
BshFI	GGCC	4 cut(s)	675, 771, 859, 1027
BsiHKCI	CYCGRG	2 cut(s)	477, 864
BsiSI	CCGG	1 cut(s)	865
BslFI	GGGAC	3 cut(s)	52, 745, 1055
BslI	CCNNNNNNNGG	1 cut(s)	965
BsmAI	GTCTC	4 cut(s)	49, 693, 934, 1032
BsmFI	GGGAC	3 cut(s)	52, 745, 1055
BsmI	GAATGC	2 cut(s)	182, 1129
BsnI	GGCC	4 cut(s)	675, 771, 859, 1027
BsoBI	CYCGRG	2 cut(s)	477, 864
Bsp1286I	GDGCHC	2 cut(s)	86, 892
Bsp143I	GATC	4 cut(s)	144, 229, 640, 934
BspACI	CCGC	2 cut(s)	451, 747
BspANI	GGCC	4 cut(s)	675, 771, 859, 1027
BspCNI	CTCAG	5 cut(s)	101, 274, 583, 745, 1066
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	1059, 1071
BspMAI	CTGCAG	1 cut(s)	1068
BspMI	ACCTGC	1 cut(s)	1057
BspPI	GGATC	3 cut(s)	139, 648, 929
BsrDI	GCAATG	1 cut(s)	997
BsrI	ACTGG	3 cut(s)	217, 692, 1114
BssECI	CCNNGG	3 cut(s)	98, 527, 864
BssMI	GATC	4 cut(s)	144, 229, 640, 934
BssT1I	CCWWGG	2 cut(s)	98, 527
Bst4CI	ACNGT	4 cut(s)	11, 338, 347, 1155
Bst6I	CTCTTC	2 cut(s)	52, 129
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	372, 861
BstDEI	CTNAG	5 cut(s)	88, 282, 591, 753, 1074
BstENI	CCTNNNNNAGG	1 cut(s)	963
BstF5I	GGATG	3 cut(s)	403, 448, 546
BstKTI	GATC	4 cut(s)	147, 232, 643, 937
BstMAI	GTCTC	4 cut(s)	49, 693, 934, 1032
BstMBI	GATC	4 cut(s)	144, 229, 640, 934
BstMWI	GCNNNNNNNGC	3 cut(s)	523, 557, 1033
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	863, 864
BstSFI	CTRYAG	2 cut(s)	315, 1064
BstV1I	GCAGC	6 cut(s)	151, 406, 422, 501, 572, 992
BstX2I	RGATCY	2 cut(s)	144, 640
BstYI	RGATCY	2 cut(s)	144, 640
Bsu36I	CCTNAGG	1 cut(s)	1074
BsuRI	GGCC	4 cut(s)	675, 771, 859, 1027
BtsCI	GGATG	3 cut(s)	403, 448, 546
BtsIMutI	CAGTG	6 cut(s)	96, 199, 210, 279, 699, 1151
BveI	ACCTGC	1 cut(s)	1057
Cac8I	GCNNGC	2 cut(s)	372, 861
CciI	TCATGA	1 cut(s)	331
Cfr13I	GGNCC	3 cut(s)	531, 689, 1069
Cfr9I	CCCGGG	1 cut(s)	864
CviAII	CATG	6 cut(s)	235, 332, 584, 710, 898, 985
DdeI	CTNAG	5 cut(s)	88, 282, 591, 753, 1074
DpnI	GATC	4 cut(s)	146, 231, 642, 936
DpnII	GATC	4 cut(s)	144, 229, 640, 934
EaeI	YGGCCR	1 cut(s)	857
Eam1104I	CTCTTC	2 cut(s)	52, 129
EarI	CTCTTC	2 cut(s)	52, 129
Eco130I	CCWWGG	2 cut(s)	98, 527
Eco147I	AGGCCT	1 cut(s)	1027
Eco24I	GRGCYC	2 cut(s)	86, 892
Eco47I	GGWCC	3 cut(s)	531, 689, 1069
Eco57I	CTGAAG	2 cut(s)	15, 153
Eco81I	CCTNAGG	1 cut(s)	1074
Eco88I	CYCGRG	2 cut(s)	477, 864
EcoNI	CCTNNNNNAGG	1 cut(s)	963
EcoO109I	RGGNCCY	1 cut(s)	1069
EcoT14I	CCWWGG	2 cut(s)	98, 527
EcoT38I	GRGCYC	2 cut(s)	86, 892
ErhI	CCWWGG	2 cut(s)	98, 527
FaeI	CATG	6 cut(s)	238, 335, 587, 713, 901, 988
FalI	AAGNNNNNCTT	2 cut(s)	826, 858
FaqI	GGGAC	3 cut(s)	52, 745, 1055
FatI	CATG	6 cut(s)	234, 331, 583, 709, 897, 984
FauI	CCCGC	1 cut(s)	444
FauNDI	CATATG	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	1047
Fnu4HI	GCNGC	7 cut(s)	165, 395, 436, 515, 561, 747, 981
FokI	GGATG	3 cut(s)	390, 455, 553
FriOI	GRGCYC	2 cut(s)	86, 892
Fsp4HI	GCNGC	7 cut(s)	165, 395, 436, 515, 561, 747, 981
FspBI	CTAG	3 cut(s)	99, 944, 989
GluI	GCNGC	7 cut(s)	165, 395, 436, 515, 561, 747, 981
HaeIII	GGCC	4 cut(s)	675, 771, 859, 1027
HapII	CCGG	1 cut(s)	865
Hin1II	CATG	6 cut(s)	238, 335, 587, 713, 901, 988
HinfI	GANTC	7 cut(s)	42, 65, 94, 127, 158, 1049, 1148
HpaII	CCGG	1 cut(s)	865
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	37, 1048
Hpy188I	TCNGA	4 cut(s)	64, 667, 939, 1122
Hpy188III	TCNNGA	7 cut(s)	131, 332, 507, 611, 644, 763, 818
Hpy8I	GTNNAC	2 cut(s)	37, 1048
HpyAV	CCTTC	2 cut(s)	39, 941
HpyCH4III	ACNGT	4 cut(s)	11, 338, 347, 1155
HpyCH4V	TGCA	7 cut(s)	56, 167, 182, 551, 560, 656, 1066
HpyF10VI	GCNNNNNNNGC	3 cut(s)	523, 557, 1033
HpyF3I	CTNAG	5 cut(s)	88, 282, 591, 753, 1074
Hsp92II	CATG	6 cut(s)	238, 335, 587, 713, 901, 988
Kzo9I	GATC	4 cut(s)	144, 229, 640, 934
Lsp1109I	GCAGC	6 cut(s)	151, 406, 422, 501, 572, 992
MaeI	CTAG	3 cut(s)	99, 944, 989
MaeIII	GTNAC	3 cut(s)	5, 117, 852
MalI	GATC	4 cut(s)	146, 231, 642, 936
MboI	GATC	4 cut(s)	144, 229, 640, 934
MboII	GAAGA	9 cut(s)	39, 116, 146, 556, 806, 846, 922, 925, 1157
MflI	RGATCY	2 cut(s)	144, 640
MhlI	GDGCHC	2 cut(s)	86, 892
MluCI	AATT	4 cut(s)	217, 409, 496, 917
MlyI	GAGTC	3 cut(s)	51, 74, 1043
MmeI	TCCRAC	1 cut(s)	618
MseI	TTAA	4 cut(s)	290, 324, 618, 963
MslI	CAYNNNNRTG	2 cut(s)	336, 539
MspA1I	CMGCKG	2 cut(s)	164, 451
MspI	CCGG	1 cut(s)	865
MspR9I	CCNGG	2 cut(s)	865, 866
Mva1269I	GAATGC	2 cut(s)	182, 1129
MwoI	GCNNNNNNNGC	3 cut(s)	523, 557, 1033
NciI	CCSGG	2 cut(s)	865, 866
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	4 cut(s)	144, 229, 640, 934
NlaIII	CATG	6 cut(s)	238, 335, 587, 713, 901, 988
NlaIV	GGNNCC	2 cut(s)	1059, 1071
NmuCI	GTSAC	1 cut(s)	852
NspI	RCATGY	1 cut(s)	238
PagI	TCATGA	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	1027
PctI	GAATGC	2 cut(s)	182, 1129
PfeI	GAWTC	4 cut(s)	94, 127, 158, 1148
PkrI	GCNGC	7 cut(s)	166, 396, 437, 516, 562, 748, 982
PleI	GAGTC	3 cut(s)	50, 73, 1043
PpsI	GAGTC	3 cut(s)	50, 73, 1043
PpuMI	RGGWCCY	1 cut(s)	1069
Psp5II	RGGWCCY	1 cut(s)	1069
PspN4I	GGNNCC	2 cut(s)	1059, 1071
PspPI	GGNCC	3 cut(s)	531, 689, 1069
PspPPI	RGGWCCY	1 cut(s)	1069
PsrI	GAACNNNNNNTAC	2 cut(s)	257, 289
PstI	CTGCAG	1 cut(s)	1068
PsuI	RGATCY	2 cut(s)	144, 640
PvuII	CAGCTG	1 cut(s)	164
RseI	CAYNNNNRTG	2 cut(s)	336, 539
SaqAI	TTAA	4 cut(s)	290, 324, 618, 963
SatI	GCNGC	7 cut(s)	165, 395, 436, 515, 561, 747, 981
Sau3AI	GATC	4 cut(s)	144, 229, 640, 934
Sau96I	GGNCC	3 cut(s)	531, 689, 1069
SchI	GAGTC	3 cut(s)	51, 74, 1043
ScrFI	CCNGG	2 cut(s)	865, 866
SduI	GDGCHC	2 cut(s)	86, 892
SfcI	CTRYAG	2 cut(s)	315, 1064
SinI	GGWCC	3 cut(s)	531, 689, 1069
SmaI	CCCGGG	1 cut(s)	866
SmiMI	CAYNNNNRTG	2 cut(s)	336, 539
Sse9I	AATT	4 cut(s)	217, 409, 496, 917
SseBI	AGGCCT	1 cut(s)	1027
SsiI	CCGC	2 cut(s)	451, 747
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	3 cut(s)	99, 944, 989
StuI	AGGCCT	1 cut(s)	1027
StyD4I	CCNGG	2 cut(s)	863, 864
StyI	CCWWGG	2 cut(s)	98, 527
TaaI	ACNGT	4 cut(s)	11, 338, 347, 1155
TaqI	TCGA	2 cut(s)	125, 819
TasI	AATT	4 cut(s)	217, 409, 496, 917
TauI	GCSGC	1 cut(s)	749
TfiI	GAWTC	4 cut(s)	94, 127, 158, 1148
Tru1I	TTAA	4 cut(s)	290, 324, 618, 963
Tru9I	TTAA	4 cut(s)	290, 324, 618, 963
TscAI	CASTG	6 cut(s)	96, 199, 217, 286, 699, 1158
TseFI	GTSAC	1 cut(s)	852
TseI	GCWGC	6 cut(s)	164, 394, 435, 514, 560, 980
Tsp45I	GTSAC	1 cut(s)	852
TspDTI	ATGAA	6 cut(s)	265, 320, 459, 557, 600, 962
TspGWI	ACGGA	1 cut(s)	553
TspMI	CCCGGG	1 cut(s)	864
TspRI	CASTG	6 cut(s)	96, 199, 217, 286, 699, 1158
VpaK11BI	GGWCC	3 cut(s)	531, 689, 1069
XagI	CCTNNNNNAGG	1 cut(s)	963
XapI	RAATTY	2 cut(s)	217, 409
XceI	RCATGY	1 cut(s)	238
XmaI	CCCGGG	1 cut(s)	864
XmaJI	CCTAGG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	1047
XspI	CTAG	3 cut(s)	99, 944, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.